Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d017170_T004
CDS Infomation	cds chromosome:B73_RefGen_v4:5:187815456:187820838:-1 gene:Zm00001d017170 gene_biotype:protein_coding transcript_biotype:protein_coding description:Retrovirus-related Pol polyprotein from transposon TNT 1-94
Sequence	ATGTCAAGAATACCAAAACAATTACGACCTTCTCTTCCTAAGGTCCCAAGAAGTACTTCA TCTGTGACAAACAATTTGGAATCACACAAAAAAATAGCTCCAGTTAAAGCTGAACTAGTT CACAGAGTAACTGGATTCCCTGCTAGATTGAAGATCAATCCTGTATCTTCTGGACCTAGC ATAGAGAAGGCTGTGGTGCCTGCTGTTACTGCCATACATGAAGAAGCCACTGTGAAATGC AAAAAAAACCCAGCACACCCACAAATTAGCCCATCCACCCCCTTTGATAGCACTGTGTCA AAACTTGCTAAGCCATCAGCACTTCGATTGCCTTCACCTTCACTTGGTTTTTTCACTCAG GAAAAAGCGCATGTGCCACATGGTGATGCTGCTAAAAGAAACGTGGGGAGGTGTTTCTCT TCAAATACTTCAGCGCTTGATAGACCTCCCAGATACAGGCAGTCTGAGGAAAGCAGACTC CACCTAGCAAAGCAGCTGTCAACCAATGGCACTGTTGCTTCCAATCTTGTGCTACCTGTG ACTAGAGAGGGCCATCTCAAATCTTTGGTGGTTCCAGAAAATGAATCATCGTCAAAAGTT ATCATTACATACTTAGAAAAATCTGGAAATGTAAATAATCAAGCAATGCCAAAGGCTGAT TTCTTATTGGCAGGAACTGGAGCTACTGATACTACACAACCAATGAATTTAGAAAAGAAA GATGACGCTGGAAATAGTGAGACATTGCTTGTAGAAGGAATGGATGATATCAAAGAGATT GAACCTCTTGATAATTTCTACGCTCCTGAAGCTATTTGTTCCTCAACCATTCGACCTGTT GAGGATTCTTTCTCGCTTGAAGCCAGTTATTCCTCAACTAAACCTATTGTAGAGAGTAAA TTGTCACTCTCTTGCATTTCTTCTAAAGTACACTCCTCTAGTGAGCTTAGTTGTCAAGGC AAGTCAGTCAGTGATCCCAGTGCAGCGATGGACATGGAAAACTCTAATGTTGGAGATACT GCACTTAGCGCTTCTTTGTCGAAAGGCAGGAGTTGCACTCCAGCTCTTGATTTGTTGCAA GGATTTTATTCATTTGATCGCCAGAATATTGAATGTCCTATGCTGATGGAATCAGTATCT ACAATATGTGCAGACCAGCTGCCACATTGTGACAGTTTAAGCGATGAAACGCCAGCCCTA GCTGGCAGTCATTCAGATTTGAATGATTCTTTGTGTGATGAAGCTAAACCTGCTTTGTCA AAAGAACCAAATACTGAAGGTGAAATGGAGCTTCAAACAAACAGTACCATAGCTGTAAAG GAAACTCCGTTGTTAGATGTGGGGTGTGGGCATATTCACAATTATAGGACCACAGATTGT TCTACGAGATTGGAAGCACCTACACCTTGTGTGGAAAGACGTCATGCTTTATTAGTAGAA CCAAATATGGAAGAAAAAATGGTGCTTGACACAAACAGATTGTCAGCTATACAGTACACA CCACATATAGAAAAGAACAAGGCACTGGAAAGATCACCGGCAAATACAATCCGTAAAGAT CATCTGAAGAACTTGATACCATTTACAGAAGAATGGCTTGCTGTCATGGAGTCTTGTGGG CAGGAAGTTTTGGAACAAAAGACCGGTGCTGTGCAAAATTCTCCTCCTGACAAAACACCT CCAGAACCGAGTCCTTGGTCACCGGTTAAACGGAAGGCGCAAGATGTTGGACCATTTGAC TGTACGAAGTACTCCAAAAGCATCCGAACCTCTGGTACCTAA

Peptide Sequence

PEP ID	Zm00001d017170_P004
PEP Infomation	pep chromosome:B73_RefGen_v4:5:187815456:187820838:-1 gene:Zm00001d017170 transcript:Zm00001d017170_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:Retrovirus-related Pol polyprotein from transposon TNT 1-94
Sequence	MSRIPKQLRPSLPKVPRSTSSVTNNLESHKKIAPVKAELVHRVTGFPARLKINPVSSGPS IEKAVVPAVTAIHEEATVKCKKNPAHPQISPSTPFDSTVSKLAKPSALRLPSPSLGFFTQ EKAHVPHGDAAKRNVGRCFSSNTSALDRPPRYRQSEESRLHLAKQLSTNGTVASNLVLPV TREGHLKSLVVPENESSSKVIITYLEKSGNVNNQAMPKADFLLAGTGATDTTQPMNLEKK DDAGNSETLLVEGMDDIKEIEPLDNFYAPEAICSSTIRPVEDSFSLEASYSSTKPIVESK LSLSCISSKVHSSSELSCQGKSVSDPSAAMDMENSNVGDTALSASLSKGRSCTPALDLLQ GFYSFDRQNIECPMLMESVSTICADQLPHCDSLSDETPALAGSHSDLNDSLCDEAKPALS KEPNTEGEMELQTNSTIAVKETPLLDVGCGHIHNYRTTDCSTRLEAPTPCVERRHALLVE PNMEEKMVLDTNRLSAIQYTPHIEKNKALERSPANTIRKDHLKNLIPFTEEWLAVMESCG QEVLEQKTGAVQNSPPDKTPPEPSPWSPVKRKAQDVGPFDCTKYSKSIRTSGT

Transcript Sequence

Transcript ID	Zm00001d017170_T004
Transcript Infomation	cdna chromosome:B73_RefGen_v4:5:187815456:187820838:-1 gene:Zm00001d017170 gene_biotype:protein_coding transcript_biotype:protein_coding description:Retrovirus-related Pol polyprotein from transposon TNT 1-94
Sequence	CTACCTCCTCCGTCCTCCGGATCCCAAAATCTCAAACCGTCAAACGGGACCTGATACCTG AGATACGCGCATGGCGTCGCCGCGCCGCATTCCCTCTGTGCCTGCCAGATCCGGCAACAA AGAGAATATATCTCAAGATGGAGAAGCTCCCTTGGATTTTGCAACCTTGCCTAAAGAAGG GCCTGCCACTACAAGGCGGAAGAAGAAGCTTGCAGGTTTCAACTTGAGGAAAAGCATTGC CTGGAATCCTGCTTTTTTAACTGAAGAAGGTGTTTTGGATAACTCGGAGCTTTCTGTGCT TACTGGCTCCCAACCGATGGCAAATAGGAGCCCTGGATCAGGGGTCAGTAGTATAATGTC CCCATCCTGTCAGTCAGGGAGATATGGTAACACATATGTACGGAAGGAAGCCGCAGGGAA TTCACATGGAAAATTGCCTGCAAGATATCACAGGGCAGAAAGCCAGGGAAGGAAATTGTT TTCTTCAGCAAAAACTCCTCAGGGGGACAATCAGAAAGAATCTGCTGGAACACAAAACAG AAGCTCTGCAAGAATCATCCAAATATGTACACCAAGAGTACCAGCTGGATCTATATATCC TAATGAAGTTTTAGGCAGGATTGAGCAGGCCTTAAAGTTTTTTCCCTTGATAACAGTAGG GCTGACTTTGTTGTCCATATGTTTTCACAAGTTTAAGTATTCATTCATTACTACATACGC TGTTAGCCTTGACTTAGATATACACAGAAGAAAGTACAAAACTCATCTGCTTCTACATCT CAGATGTCAAGAATACCAAAACAATTACGACCTTCTCTTCCTAAGGTCCCAAGAAGTACT TCATCTGTGACAAACAATTTGGAATCACACAAAAAAATAGCTCCAGTTAAAGCTGAACTA GTTCACAGAGTAACTGGATTCCCTGCTAGATTGAAGATCAATCCTGTATCTTCTGGACCT AGCATAGAGAAGGCTGTGGTGCCTGCTGTTACTGCCATACATGAAGAAGCCACTGTGAAA TGCAAAAAAAACCCAGCACACCCACAAATTAGCCCATCCACCCCCTTTGATAGCACTGTG TCAAAACTTGCTAAGCCATCAGCACTTCGATTGCCTTCACCTTCACTTGGTTTTTTCACT CAGGAAAAAGCGCATGTGCCACATGGTGATGCTGCTAAAAGAAACGTGGGGAGGTGTTTC TCTTCAAATACTTCAGCGCTTGATAGACCTCCCAGATACAGGCAGTCTGAGGAAAGCAGA CTCCACCTAGCAAAGCAGCTGTCAACCAATGGCACTGTTGCTTCCAATCTTGTGCTACCT GTGACTAGAGAGGGCCATCTCAAATCTTTGGTGGTTCCAGAAAATGAATCATCGTCAAAA GTTATCATTACATACTTAGAAAAATCTGGAAATGTAAATAATCAAGCAATGCCAAAGGCT GATTTCTTATTGGCAGGAACTGGAGCTACTGATACTACACAACCAATGAATTTAGAAAAG AAAGATGACGCTGGAAATAGTGAGACATTGCTTGTAGAAGGAATGGATGATATCAAAGAG ATTGAACCTCTTGATAATTTCTACGCTCCTGAAGCTATTTGTTCCTCAACCATTCGACCT GTTGAGGATTCTTTCTCGCTTGAAGCCAGTTATTCCTCAACTAAACCTATTGTAGAGAGT AAATTGTCACTCTCTTGCATTTCTTCTAAAGTACACTCCTCTAGTGAGCTTAGTTGTCAA GGCAAGTCAGTCAGTGATCCCAGTGCAGCGATGGACATGGAAAACTCTAATGTTGGAGAT ACTGCACTTAGCGCTTCTTTGTCGAAAGGCAGGAGTTGCACTCCAGCTCTTGATTTGTTG CAAGGATTTTATTCATTTGATCGCCAGAATATTGAATGTCCTATGCTGATGGAATCAGTA TCTACAATATGTGCAGACCAGCTGCCACATTGTGACAGTTTAAGCGATGAAACGCCAGCC CTAGCTGGCAGTCATTCAGATTTGAATGATTCTTTGTGTGATGAAGCTAAACCTGCTTTG TCAAAAGAACCAAATACTGAAGGTGAAATGGAGCTTCAAACAAACAGTACCATAGCTGTA AAGGAAACTCCGTTGTTAGATGTGGGGTGTGGGCATATTCACAATTATAGGACCACAGAT TGTTCTACGAGATTGGAAGCACCTACACCTTGTGTGGAAAGACGTCATGCTTTATTAGTA GAACCAAATATGGAAGAAAAAATGGTGCTTGACACAAACAGATTGTCAGCTATACAGTAC ACACCACATATAGAAAAGAACAAGGCACTGGAAAGATCACCGGCAAATACAATCCGTAAA GATCATCTGAAGAACTTGATACCATTTACAGAAGAATGGCTTGCTGTCATGGAGTCTTGT GGGCAGGAAGTTTTGGAACAAAAGACCGGTGCTGTGCAAAATTCTCCTCCTGACAAAACA CCTCCAGAACCGAGTCCTTGGTCACCGGTTAAACGGAAGGCGCAAGATGTTGGACCATTT GACTGTACGAAGTACTCCAAAAGCATCCGAACCTCTGGTACCTAACTGCAGACGTTTGAG TTCACATTCTATCACGGTATAGCCACGGTGATAAGGTCAGGGCATCCGAGCTTTTGGTAC CCTAACTGCAGACCTTGACCTTCACGCTCTGTCAACTGACATGGTACAGTCACTGTGATA AGGTCAGGGACTCCCAGCCGAACACGGCGTAAATACCTGCTACCGATTGTCATTTTTGAC CAAACTAACTGCGATGTAGTTCAGCAGCCTTGTTGACCTGCATTTTTTTGCTTCCCCCCC CCCCCCCCCCCCCCCCTTTCCCCCCTTTTTTTGTTATTGTGAAATACTGTTGAGATCACG CCCCAAGCAAACGCTTGGTAATTAAGAAGGGAAAAAAGAGAGAGAGAGAGGAGAAAGGAT CTATTATTATGTT