Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Zea mays ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d017139_T004
CDS Infomation	cds chromosome:B73_RefGen_v4:5:186707427:186712642:-1 gene:Zm00001d017139 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:hydroxymethylbutenyl diphosphate synthase1 description: hydroxymethylbutenyl diphosphate synthase1
Sequence	ATGGCCACCGGCGTGGCTCCAGCTCCTCTCCCACATGTCAGAGTGCATCATGGGGGCGTC GGGTTCACCAGGAGCGTCGATTTTGCGAAGGTCTTGTCTGCTCCCGGTGCCGGCACGATG AGGGCAAGCTCCTCTAGAGGCAGGGCGCTCGTGGCGAAGAGCTCTAGTACTGGCTCGGAG ACCATGGAGCTCGAGCCATCTTCAGAAGGAAGCCCACTTTTAGTACCCAGGCAGAAGTAC TGTGAATCAACACACCAGACAAGGAGGAGGAAAACTCGAACTGTGATGGTGGGGAATGTG CCACTTGGCAGTGATCATCCCATAAGGATTCAAACCATGACGACTTCAGATACCAAGGAT GTTGCAAAAACAGTAGAGGAGGTGATGAGGATAGCAGATAAAGGAGCTGATCTTGTTAGA ATAACAGTCCAGGGTAGGAAGGAAGCTGATGCCTGCTTTGAGATCAAGAACACTCTGGTT CAGAAGAATTACAACATTCCACTAGTGGCCGATATTCATTTTGCTCCTACGGTAGCCCTA AGGGTGGCAGAATGTTTTGACAAAATTCGTGTGAACCCAGGAAATTTTGCTGATCGTCGT GCTCAATTTGAAAAGCTGGAATATACTGACGACGACTACCAAAAAGAGCTAGAGCATATT GAGAAGGTGTTTTCTCCATTAGTTGAGAAATGCAAGCAGTATGGAAGAGCAATGCGAATA GGAACAAATCATGGTAGTCTTTCTGACCGCATAATGAGCTACTATGGTGATTCTCCACGG GGAATGGTTGAGTCTGCTTTGGAATTTGCTAGAATATGTCGGAAGTTGGACTTCCACAAC TTTGTATTTTCGATGAAAGCTAGTAACCCTGTTATCATGGTCCAAGCATATCGCCTGCTT GTGGCAGAAATGTATAACCTAGGATGGGATTATCCCTTGCACTTGGGTGTTACAGAAGCT GGAGAGGGTGAAGATGGAAGGATGAAATCTGCTATTGGCATTGGGACACTGCTAATGGAT GGTTTGGGTGATACAATCCGTGTCTCCCTCACAGAACCACCAGAAGAAGAGATTGATCCT TGCCAAAGGTTGGCAAATCTTGGGACGCAGGCCGCAAACCTTCAAATTGGGGTGGCCCCA TTTGAAGAAAAGCACAGGCGTTATTTTGATTTCCAGCGTAGGAGTGGTCAATTGCCTTTG CAGAAGGAGGGTGAGGAAGTTGACTACAGAAATGTCCTGCATCGTGATGGTTCTGTACTG ATGTCAGTTTCCCTGGATCAGTTGAAGGCTCCTGATCTCCTTTATAGGTCTCTTGCAGCA AAGCTTGTGGTTGGCATGCCTTTCAAGGATCTGGCTACTGTAGATTCCATTCTTTTGAGG GAGCTCCCCCCTGTAGAAGATGCTGAAGCTAGGCTTGCACTCAAAAGATTAGTTGACATC AGCATGGGCGTACTGGCCCCCTTATCGGAGCAGTTGACAAAGCCACTCCCACATGCAATT GTACTTGTCAACCTCGACGAATTGTCAAGTGGTGCACACAAACTTTTGCCAGAAGGCACT AGACTAGCTGTCACTCTTCGTGGTGATGAATCATACGAGCAGCTAGATATTCTTAAGGAT GTTGATGATATAACAATGTTGTTACATAATGTTCCATATGGTGAGGAGAAGACAGGCAGG GTGCATGCTGCTAGGAGGTTATTTGAGTACTTACAGGCCAATGGCTTGAACTTCCCTGTA ATTCATCACATAAATTTCCCTGAAACCATTGACAGAGATGGTCTTGTCATTGGTGCTGGG GCCAACGTTGGTGCTCTCTTAGTCGATGGTCTTGGTGATGGTGTATTCCTTGAAGCTGCT GACCAGGAATTTGAGTTTCTGAGGGACACATCTTTCAACTTGCTCCAAGGTTGCAGGATG CGCAACACAAAAACTGTAGGTTCATGTTTTTTGGTTTATTTAATGATATGGCTACCTCTT TCTGTATATCCAGTGGACGACATATACCACTACTTGCAGGAGTTG

Peptide Sequence

PEP ID	Zm00001d017139_P004
PEP Infomation	pep chromosome:B73_RefGen_v4:5:186707427:186712642:-1 gene:Zm00001d017139 transcript:Zm00001d017139_T004 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:hydroxymethylbutenyl diphosphate synthase1 description: hydroxymethylbutenyl diphosphate synthase1
Sequence	MATGVAPAPLPHVRVHHGGVGFTRSVDFAKVLSAPGAGTMRASSSRGRALVAKSSSTGSE TMELEPSSEGSPLLVPRQKYCESTHQTRRRKTRTVMVGNVPLGSDHPIRIQTMTTSDTKD VAKTVEEVMRIADKGADLVRITVQGRKEADACFEIKNTLVQKNYNIPLVADIHFAPTVAL RVAECFDKIRVNPGNFADRRAQFEKLEYTDDDYQKELEHIEKVFSPLVEKCKQYGRAMRI GTNHGSLSDRIMSYYGDSPRGMVESALEFARICRKLDFHNFVFSMKASNPVIMVQAYRLL VAEMYNLGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLMDGLGDTIRVSLTEPPEEEIDP CQRLANLGTQAANLQIGVAPFEEKHRRYFDFQRRSGQLPLQKEGEEVDYRNVLHRDGSVL MSVSLDQLKAPDLLYRSLAAKLVVGMPFKDLATVDSILLRELPPVEDAEARLALKRLVDI SMGVLAPLSEQLTKPLPHAIVLVNLDELSSGAHKLLPEGTRLAVTLRGDESYEQLDILKD VDDITMLLHNVPYGEEKTGRVHAARRLFEYLQANGLNFPVIHHINFPETIDRDGLVIGAG ANVGALLVDGLGDGVFLEAADQEFEFLRDTSFNLLQGCRMRNTKTVGSCFLVYLMIWLPL SVYPVDDIYHYLQEL

Transcript Sequence

Transcript ID	Zm00001d017139_T004
Transcript Infomation	cdna chromosome:B73_RefGen_v4:5:186707427:186712642:-1 gene:Zm00001d017139 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:hydroxymethylbutenyl diphosphate synthase1 description: hydroxymethylbutenyl diphosphate synthase1
Sequence	GTCACCGAAGGGAGGAGCGCGGTCGAGGTGCCGCCCACACGGAGCTGCGAGGTGTTTGTA GGATCTCCTAGGTGAGCCCCTGCTGCTTGGAGACAGCCATGGCCACCGGCGTGGCTCCAG CTCCTCTCCCACATGTCAGAGTGCATCATGGGGGCGTCGGGTTCACCAGGAGCGTCGATT TTGCGAAGGTCTTGTCTGCTCCCGGTGCCGGCACGATGAGGGCAAGCTCCTCTAGAGGCA GGGCGCTCGTGGCGAAGAGCTCTAGTACTGGCTCGGAGACCATGGAGCTCGAGCCATCTT CAGAAGGAAGCCCACTTTTAGTACCCAGGCAGAAGTACTGTGAATCAACACACCAGACAA GGAGGAGGAAAACTCGAACTGTGATGGTGGGGAATGTGCCACTTGGCAGTGATCATCCCA TAAGGATTCAAACCATGACGACTTCAGATACCAAGGATGTTGCAAAAACAGTAGAGGAGG TGATGAGGATAGCAGATAAAGGAGCTGATCTTGTTAGAATAACAGTCCAGGGTAGGAAGG AAGCTGATGCCTGCTTTGAGATCAAGAACACTCTGGTTCAGAAGAATTACAACATTCCAC TAGTGGCCGATATTCATTTTGCTCCTACGGTAGCCCTAAGGGTGGCAGAATGTTTTGACA AAATTCGTGTGAACCCAGGAAATTTTGCTGATCGTCGTGCTCAATTTGAAAAGCTGGAAT ATACTGACGACGACTACCAAAAAGAGCTAGAGCATATTGAGAAGGTGTTTTCTCCATTAG TTGAGAAATGCAAGCAGTATGGAAGAGCAATGCGAATAGGAACAAATCATGGTAGTCTTT CTGACCGCATAATGAGCTACTATGGTGATTCTCCACGGGGAATGGTTGAGTCTGCTTTGG AATTTGCTAGAATATGTCGGAAGTTGGACTTCCACAACTTTGTATTTTCGATGAAAGCTA GTAACCCTGTTATCATGGTCCAAGCATATCGCCTGCTTGTGGCAGAAATGTATAACCTAG GATGGGATTATCCCTTGCACTTGGGTGTTACAGAAGCTGGAGAGGGTGAAGATGGAAGGA TGAAATCTGCTATTGGCATTGGGACACTGCTAATGGATGGTTTGGGTGATACAATCCGTG TCTCCCTCACAGAACCACCAGAAGAAGAGATTGATCCTTGCCAAAGGTTGGCAAATCTTG GGACGCAGGCCGCAAACCTTCAAATTGGGGTGGCCCCATTTGAAGAAAAGCACAGGCGTT ATTTTGATTTCCAGCGTAGGAGTGGTCAATTGCCTTTGCAGAAGGAGGGTGAGGAAGTTG ACTACAGAAATGTCCTGCATCGTGATGGTTCTGTACTGATGTCAGTTTCCCTGGATCAGT TGAAGGCTCCTGATCTCCTTTATAGGTCTCTTGCAGCAAAGCTTGTGGTTGGCATGCCTT TCAAGGATCTGGCTACTGTAGATTCCATTCTTTTGAGGGAGCTCCCCCCTGTAGAAGATG CTGAAGCTAGGCTTGCACTCAAAAGATTAGTTGACATCAGCATGGGCGTACTGGCCCCCT TATCGGAGCAGTTGACAAAGCCACTCCCACATGCAATTGTACTTGTCAACCTCGACGAAT TGTCAAGTGGTGCACACAAACTTTTGCCAGAAGGCACTAGACTAGCTGTCACTCTTCGTG GTGATGAATCATACGAGCAGCTAGATATTCTTAAGGATGTTGATGATATAACAATGTTGT TACATAATGTTCCATATGGTGAGGAGAAGACAGGCAGGGTGCATGCTGCTAGGAGGTTAT TTGAGTACTTACAGGCCAATGGCTTGAACTTCCCTGTAATTCATCACATAAATTTCCCTG AAACCATTGACAGAGATGGTCTTGTCATTGGTGCTGGGGCCAACGTTGGTGCTCTCTTAG TCGATGGTCTTGGTGATGGTGTATTCCTTGAAGCTGCTGACCAGGAATTTGAGTTTCTGA GGGACACATCTTTCAACTTGCTCCAAGGTTGCAGGATGCGCAACACAAAAACTGTAGGTT CATGTTTTTTGGTTTATTTAATGATATGGCTACCTCTTTCTGTATATCCAGTGGACGACA TATACCACTACTTGCAGGAGTTGC