Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d017117_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:5:185970778:185973934:1 gene:Zm00001d017117 gene_biotype:protein_coding transcript_biotype:protein_coding description:26S proteasome non-ATPase regulatory subunit 6 homolog
Sequence

ATGGACGGCGGCGCCGGCGAGGAGGGGAAGCAGGAGCGGCACCTGGTGCTGGCCCACAAG
CTCTTCCTTCTATCCCACCCCTCCGTTGATGACCTCTCCAAGGTCGCCCTCCGCGCCGAA
GTCCTCGACACCGTGAAATCCGATGATATGGCGACGCTGTTTGAGTCGCTGGTCGCCGCG
GGTGTGCTGGAGGGGGACGCCGCGCTGCTGGCCGAGATGCGTGGGAGGATTGACGAGGAG
ATCCGCAAGCTAGATGAGAAAATTGCTGATGCGGAGGAGAACTTGGGTGAGAGCGAAGTC
CGTGAAGCACATCTTGCCAAATCTTTGTACTTTATAAGGGTCGGTGAGAAGGAAAAGGCC
CTGGAACAGCTTAAAGTCACTGAAGGAAAAACTGTAGCTGTTGGCCAAAAGATGGATCTT
GTGTTCCACACTTTGCAGATTGGTTTTTTCTACATGGATTTTGATCTGATATCAAAATCC
ATCGATAAGGCAAAGAACTTGTTTGAGGAAGGAGGCGATTGGGAGAGGAAGAACAGGTTG
AAAGTATATGAAGGCTTGTACTGCATGGCAACCAGAAACTTCAAGAAAGCTGCCAGCTTA
TTTTTAGACTCGATTTCGACTTTCACAACTTATGAGATATTCCCATATGATACGTTCATC
TTCTATACAGTCCTCACAAGTGTCATCACATTGGATCGTGTATCTCTGAAACAAAAGGTG
GTAGATGCACCAGAAATCCTGGCTGTAATTGGCAAAGTACCTCACCTCTCCGAGTTTCTC
AACTCCCTGTACAACTGCCAGTATAAGTCGTTCTTCGTTGCATTTTCTGGTCTGACAGAG
CAAATCAAGTTAGACCGTTATCTTCAGCCTCATTTCCGCTACTACATGAGGGAAGTGCGC
ACCGTGGTCAGGGAACTGTCACGGTTCATTGCAGCTGGGAAGCTGCACTGCAAGATTGAT
AAGGTTGCTGGTGTTCTGGAGACTAACCGACCTGATGAGAGGAATGCTTTCTACCAGGCG
ACCATCAAGCAAGGGGACTTCTTGCTGAACCGCATCCAGAAGCTTTCACGGGTCATTGAC
CTGTAA

Peptide Sequence

PEP ID

Zm00001d017117_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:5:185970778:185973934:1 gene:Zm00001d017117 transcript:Zm00001d017117_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:26S proteasome non-ATPase regulatory subunit 6 homolog
Sequence

MDGGAGEEGKQERHLVLAHKLFLLSHPSVDDLSKVALRAEVLDTVKSDDMATLFESLVAA
GVLEGDAALLAEMRGRIDEEIRKLDEKIADAEENLGESEVREAHLAKSLYFIRVGEKEKA
LEQLKVTEGKTVAVGQKMDLVFHTLQIGFFYMDFDLISKSIDKAKNLFEEGGDWERKNRL
KVYEGLYCMATRNFKKAASLFLDSISTFTTYEIFPYDTFIFYTVLTSVITLDRVSLKQKV
VDAPEILAVIGKVPHLSEFLNSLYNCQYKSFFVAFSGLTEQIKLDRYLQPHFRYYMREVR
TVVRELSRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQATIKQGDFLLNRIQKLSRVID
L

Transcript Sequence

Transcript ID

Zm00001d017117_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:185970778:185973934:1 gene:Zm00001d017117 gene_biotype:protein_coding transcript_biotype:protein_coding description:26S proteasome non-ATPase regulatory subunit 6 homolog
Sequence

AAACAAACAGCAGCCTGAGCACCCGAGGAGACTCCGTGCGACCGAAGCCAGAGCCAGCGG
AACCGAACGGAAGCGAGACCCCCGGCGGCTAGCGAGATGGACGGCGGCGCCGGCGAGGAG
GGGAAGCAGGAGCGGCACCTGGTGCTGGCCCACAAGCTCTTCCTTCTATCCCACCCCTCC
GTTGATGACCTCTCCAAGGTCGCCCTCCGCGCCGAAGTCCTCGACACCGTGAAATCCGAT
GATATGGCGACGCTGTTTGAGTCGCTGGTCGCCGCGGGTGTGCTGGAGGGGGACGCCGCG
CTGCTGGCCGAGATGCGTGGGAGGATTGACGAGGAGATCCGCAAGCTAGATGAGAAAATT
GCTGATGCGGAGGAGAACTTGGGTGAGAGCGAAGTCCGTGAAGCACATCTTGCCAAATCT
TTGTACTTTATAAGGGTCGGTGAGAAGGAAAAGGCCCTGGAACAGCTTAAAGTCACTGAA
GGAAAAACTGTAGCTGTTGGCCAAAAGATGGATCTTGTGTTCCACACTTTGCAGATTGGT
TTTTTCTACATGGATTTTGATCTGATATCAAAATCCATCGATAAGGCAAAGAACTTGTTT
GAGGAAGGAGGCGATTGGGAGAGGAAGAACAGGTTGAAAGTATATGAAGGCTTGTACTGC
ATGGCAACCAGAAACTTCAAGAAAGCTGCCAGCTTATTTTTAGACTCGATTTCGACTTTC
ACAACTTATGAGATATTCCCATATGATACGTTCATCTTCTATACAGTCCTCACAAGTGTC
ATCACATTGGATCGTGTATCTCTGAAACAAAAGGTGGTAGATGCACCAGAAATCCTGGCT
GTAATTGGCAAAGTACCTCACCTCTCCGAGTTTCTCAACTCCCTGTACAACTGCCAGTAT
AAGTCGTTCTTCGTTGCATTTTCTGGTCTGACAGAGCAAATCAAGTTAGACCGTTATCTT
CAGCCTCATTTCCGCTACTACATGAGGGAAGTGCGCACCGTGGTCAGGGAACTGTCACGG
TTCATTGCAGCTGGGAAGCTGCACTGCAAGATTGATAAGGTTGCTGGTGTTCTGGAGACT
AACCGACCTGATGAGAGGAATGCTTTCTACCAGGCGACCATCAAGCAAGGGGACTTCTTG
CTGAACCGCATCCAGAAGCTTTCACGGGTCATTGACCTGTAAGGACTGTTTGTGTTGGAG
CTATTCCTGCAATCGGCGCCTGCAAATGTTTCCCACCCTACGTCTTCCACAAGACATCTC
TCCTTGAGTGGGGATTGGGGAACAAGCCCTAAGAACATCTGTGTTTTAAGTGCAGAATAT
TTGTGTTTTAATCAGTAAACGCTGTCCTGTCATTTCGAGTTT