Plant GARDEN
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d017072_T008
CDS Infomation

cds chromosome:B73_RefGen_v4:5:184390026:184394355:-1 gene:Zm00001d017072 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:next to brca1a description:Protein NBR1 homolog
Sequence

ATGTCTGACTGGAGCTCGCCGGCTGCGCCGACGTTCTTCCCTTTTGGCCCGCAGGCCGAG
GGGTGGGACGTCACCTTCAAGGTCAAATATGGTGATACACTTAAAAGGTTTTATGGTTGT
GCCAATGGGAGTCATTTTGACATGAATTTATCTGCTCTACGGGCGAGGATTGATACTGCC
TTTAAGTTTGGTCCTGACGTTGACTTTGTTCTGACTTACACCGATGAGGATGGTGATATT
GTCATGCTAGATGATGATGATGACTTGCGTGATGCAGCTCTCCGTCAGAGATTAAACCCT
CTCAGGATTACTGTTCAACTGAAGAAAAATCAACCAACTGAAAAAAAAGATACTTCTGCA
CCAGTGAAATCCGCTGCTCAGGATCCACTATCCCAGTTAATGTCAGCTATTGAAGGTTTG
AAGCCTGTTCAGGAAGATAGTCTGGCCCATATAAAATCAGCTATTGGTGAAGCAATCAAG
TCTATCCCAGAGCCAATACCTGATGCCCTTGCAAAACTTTCTCATGAAATACTTGATGCA
GCACCACCACCATTAGCTGAGCTGATGAAACCTTTTGCACAATTGATGGCACCAAACAAT
AATGGCAATGGGCCATCTGATGTGCATGCTGAGGGGTCATCTAGCTCTTCCAGTGCACAG
GTGCCAGCTGAAGCTAAAAATGAGCCCAAAGTTAGGCCAAGTTTGGGTCTTAAGACCGTG
TTGAAAGAGGCTGCTGGACCTGTTCCTAATGCTGGAGCTTCTCAGGTTCAACAGCCATTA
ATGTATCCATCTGTTGAGGAGATGCTGTTCCCCTGTAATTCAGTCGACAAATCTGTTTGC
AAAGGGAAGATTGATGCTCAAAAATGGTCCCGAGCACAAAGAAGCCAACACCGTCAATTG
AAATTTGAAGACAATGCAAAAGCCACTAATGATTCTAGATGGCGCATTCCGATGTATAAA
ATGCCCTATGCACCACCACCTCCAGCAGTGCCACCCCCAGGCTATGTACCTTCTCCACAT
TTTCCTTATCCAGGCCGCCTCTTATCTTCTGGGCATCCATACGGAGATCTCGCTGGTAAC
ATGGAAAACTCAGCACCACATAGTCTGCATAGATGGATTCAGTGTGATGGCTGTGGAGCG
CAACCAATTGTTGGTCCACGTTATAAATCTAATGTGAAGGAAGACTATGATTTATGTGAT
TCCTGTTTCCAGCGCATGGGAAATGAAATGGAGTACACCAAAATAGACAAGCCTATTTTA
CCCCACAGGTTTCTAAGAGATCCCCATGTGTACCGGAAGGTGCACCATCCACGGGTTCTA
ATGAAGTCAAGACGGGAGAAACTTGAAAGTCGCTTCATTTTGGATGTGACTGTTCTTGAT
GGAACACTGATGACACCTTCTACCCCGTTCACTAAGATTTGGCGCATGCATAACAATGGG
TCTGTTGTGTGGCCACGGGGCACACAGCTTGTCTGGGTTGGTGGAGATCAGTTTGCATTG
CAGACATCTGTTCCATTAGAGATTCCTGTGGATGGTTTTCCTGTGGACAAAGAGATTGAT
GTTCCTGTTGATTTTGTGGCACCTACAAGGCCAGGGAGGTACATATCTTACTGGAGGTTG
GCTTCCCCTTCTGGTCAGAAATTTGGTCAGCGAGTTTGGGTTCATATCCAGGTGGAAGAC
CCTTCTTTTGTTAATGACAATAACAGGAATGCTGCTATTAACCTGAATCTGCCTCCAGAG
AGCTATAGTTCAAACACAACCAACTTAATTGATGTGAACATTGAGCCTGCTGACTCAGCC
CTTAGTGCACATGCTAAGCGCACAAAGGAGTTCCATTTCTGTTCAACTGATTTTCCTGAA
CCCAGTAAGTCTGTGCCTTTTACGTTGGCCACTACCTCTTTGTCTGCAGCAGCTCCTACA
AACCAAACTGGTGATGTTCCCATGTCCAGTACACCTGCTGCTGCTTGTTTGCCCTCTGTT
AATGTGCCTATGCATGAAGTCGTTACTACTCATACACCGTCACCTATTACGCCTGTCTTG
CCTACAACTATACACTTTTCAGCCCCAGTATCTGCTCCTGCAATTGCCCCTGAGCTTGCA
TCAGGGGCTGTTGGTGTGCCTCCACCTGTTAGTGCTGTGGTACCTGAGCTGTCAGAACTG
GATGTTCACAATGAGGAGAAGTTGCTGAGGGAGCTGGAGGAAATGGGTTTTAGGCAGGTC
GATCTCAACAAGGAAATCCTCAGGCAGAACAATTACAATCTGGAGCAGTCTGTCGATGAC
CTATGTGGCGTCAATGAATGGGATCCTCTCCTTGCAGAGCTGGAAGAGATGGGATTTGAT
GACACAGAGATGAACAAGGAGCTGCTTGCGAAGAATGAGGGAAGCATCAAGCGAGCTGTG
ATGGAGCTCATTGCCAGGGAGAAGAAGGACAAGTGA

Peptide Sequence

PEP ID

Zm00001d017072_P008
PEP Infomation

pep chromosome:B73_RefGen_v4:5:184390026:184394355:-1 gene:Zm00001d017072 transcript:Zm00001d017072_T008 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:next to brca1a description:Protein NBR1 homolog
Sequence

MSDWSSPAAPTFFPFGPQAEGWDVTFKVKYGDTLKRFYGCANGSHFDMNLSALRARIDTA
FKFGPDVDFVLTYTDEDGDIVMLDDDDDLRDAALRQRLNPLRITVQLKKNQPTEKKDTSA
PVKSAAQDPLSQLMSAIEGLKPVQEDSLAHIKSAIGEAIKSIPEPIPDALAKLSHEILDA
APPPLAELMKPFAQLMAPNNNGNGPSDVHAEGSSSSSSAQVPAEAKNEPKVRPSLGLKTV
LKEAAGPVPNAGASQVQQPLMYPSVEEMLFPCNSVDKSVCKGKIDAQKWSRAQRSQHRQL
KFEDNAKATNDSRWRIPMYKMPYAPPPPAVPPPGYVPSPHFPYPGRLLSSGHPYGDLAGN
MENSAPHSLHRWIQCDGCGAQPIVGPRYKSNVKEDYDLCDSCFQRMGNEMEYTKIDKPIL
PHRFLRDPHVYRKVHHPRVLMKSRREKLESRFILDVTVLDGTLMTPSTPFTKIWRMHNNG
SVVWPRGTQLVWVGGDQFALQTSVPLEIPVDGFPVDKEIDVPVDFVAPTRPGRYISYWRL
ASPSGQKFGQRVWVHIQVEDPSFVNDNNRNAAINLNLPPESYSSNTTNLIDVNIEPADSA
LSAHAKRTKEFHFCSTDFPEPSKSVPFTLATTSLSAAAPTNQTGDVPMSSTPAAACLPSV
NVPMHEVVTTHTPSPITPVLPTTIHFSAPVSAPAIAPELASGAVGVPPPVSAVVPELSEL
DVHNEEKLLRELEEMGFRQVDLNKEILRQNNYNLEQSVDDLCGVNEWDPLLAELEEMGFD
DTEMNKELLAKNEGSIKRAVMELIAREKKDK

Transcript Sequence

Transcript ID

Zm00001d017072_T008
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:184390026:184394355:-1 gene:Zm00001d017072 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:next to brca1a description:Protein NBR1 homolog
Sequence

ATCGACACTCGCCGCGCACCACCACCACCGCTGCGGCTCACGGCTACGCAGCCCGCTCTC
CCGACCCCCCCGTGCCCTCCTCTTTTTGCTACTAGCACATAGAGTTTCGCCCGAATCGAT
CGCCGACTGACTCCGCTAGGGTTCGGCCCGATCGCCGCTTCGTCCTCCCGGCTCCCGCGG
GGACCCCGCCGAGATGTCTGACTGGAGCTCGCCGGCTGCGCCGACGTTCTTCCCTTTTGG
CCCGCAGGCCGAGGGGTGGGACGTCACCTTCAAGGTCAAATATGGTGATACACTTAAAAG
GTTTTATGGTTGTGCCAATGGGAGTCATTTTGACATGAATTTATCTGCTCTACGGGCGAG
GATTGATACTGCCTTTAAGTTTGGTCCTGACGTTGACTTTGTTCTGACTTACACCGATGA
GGATGGTGATATTGTCATGCTAGATGATGATGATGACTTGCGTGATGCAGCTCTCCGTCA
GAGATTAAACCCTCTCAGGATTACTGTTCAACTGAAGAAAAATCAACCAACTGAAAAAAA
AGATACTTCTGCACCAGTGAAATCCGCTGCTCAGGATCCACTATCCCAGTTAATGTCAGC
TATTGAAGGTTTGAAGCCTGTTCAGGAAGATAGTCTGGCCCATATAAAATCAGCTATTGG
TGAAGCAATCAAGTCTATCCCAGAGCCAATACCTGATGCCCTTGCAAAACTTTCTCATGA
AATACTTGATGCAGCACCACCACCATTAGCTGAGCTGATGAAACCTTTTGCACAATTGAT
GGCACCAAACAATAATGGCAATGGGCCATCTGATGTGCATGCTGAGGGGTCATCTAGCTC
TTCCAGTGCACAGGTGCCAGCTGAAGCTAAAAATGAGCCCAAAGTTAGGCCAAGTTTGGG
TCTTAAGACCGTGTTGAAAGAGGCTGCTGGACCTGTTCCTAATGCTGGAGCTTCTCAGGT
TCAACAGCCATTAATGTATCCATCTGTTGAGGAGATGCTGTTCCCCTGTAATTCAGTCGA
CAAATCTGTTTGCAAAGGGAAGATTGATGCTCAAAAATGGTCCCGAGCACAAAGAAGCCA
ACACCGTCAATTGAAATTTGAAGACAATGCAAAAGCCACTAATGATTCTAGATGGCGCAT
TCCGATGTATAAAATGCCCTATGCACCACCACCTCCAGCAGTGCCACCCCCAGGCTATGT
ACCTTCTCCACATTTTCCTTATCCAGGCCGCCTCTTATCTTCTGGGCATCCATACGGAGA
TCTCGCTGGTAACATGGAAAACTCAGCACCACATAGTCTGCATAGATGGATTCAGTGTGA
TGGCTGTGGAGCGCAACCAATTGTTGGTCCACGTTATAAATCTAATGTGAAGGAAGACTA
TGATTTATGTGATTCCTGTTTCCAGCGCATGGGAAATGAAATGGAGTACACCAAAATAGA
CAAGCCTATTTTACCCCACAGGTTTCTAAGAGATCCCCATGTGTACCGGAAGGTGCACCA
TCCACGGGTTCTAATGAAGTCAAGACGGGAGAAACTTGAAAGTCGCTTCATTTTGGATGT
GACTGTTCTTGATGGAACACTGATGACACCTTCTACCCCGTTCACTAAGATTTGGCGCAT
GCATAACAATGGGTCTGTTGTGTGGCCACGGGGCACACAGCTTGTCTGGGTTGGTGGAGA
TCAGTTTGCATTGCAGACATCTGTTCCATTAGAGATTCCTGTGGATGGTTTTCCTGTGGA
CAAAGAGATTGATGTTCCTGTTGATTTTGTGGCACCTACAAGGCCAGGGAGGTACATATC
TTACTGGAGGTTGGCTTCCCCTTCTGGTCAGAAATTTGGTCAGCGAGTTTGGGTTCATAT
CCAGGTGGAAGACCCTTCTTTTGTTAATGACAATAACAGGAATGCTGCTATTAACCTGAA
TCTGCCTCCAGAGAGCTATAGTTCAAACACAACCAACTTAATTGATGTGAACATTGAGCC
TGCTGACTCAGCCCTTAGTGCACATGCTAAGCGCACAAAGGAGTTCCATTTCTGTTCAAC
TGATTTTCCTGAACCCAGTAAGTCTGTGCCTTTTACGTTGGCCACTACCTCTTTGTCTGC
AGCAGCTCCTACAAACCAAACTGGTGATGTTCCCATGTCCAGTACACCTGCTGCTGCTTG
TTTGCCCTCTGTTAATGTGCCTATGCATGAAGTCGTTACTACTCATACACCGTCACCTAT
TACGCCTGTCTTGCCTACAACTATACACTTTTCAGCCCCAGTATCTGCTCCTGCAATTGC
CCCTGAGCTTGCATCAGGGGCTGTTGGTGTGCCTCCACCTGTTAGTGCTGTGGTACCTGA
GCTGTCAGAACTGGATGTTCACAATGAGGAGAAGTTGCTGAGGGAGCTGGAGGAAATGGG
TTTTAGGCAGGTCGATCTCAACAAGGAAATCCTCAGGCAGAACAATTACAATCTGGAGCA
GTCTGTCGATGACCTATGTGGCGTCAATGAATGGGATCCTCTCCTTGCAGAGCTGGAAGA
GATGGGATTTGATGACACAGAGATGAACAAGGAGCTGCTTGCGAAGAATGAGGGAAGCAT
CAAGCGAGCTGTGATGGAGCTCATTGCCAGGGAGAAGAAGGACAAGTGAAGATCGTGTGC
TATCTAAGTATATATTCGTAAATAATGAGACGGCTGTGCCACTGCGGTGCAGCCCTGGTG
CGTCTCAGAGCTTGCTTATGGTGAACTCTTCGTGTTAGGTTTCTTCCTTATATCTGTCGT
GTCTGCGGTGTCGATGAACTATCTAGTATGTGGAGCGTGTGCGTCTCAGCAGTTACCCTG
CCATGCCACGTGGACTGGCTGTCGTGCCTACTGTCTGTTACCATGTATATATATAAAAAA
TGATGCGTGG