Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d017046_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:5:183596128:183610956:-1 gene:Zm00001d017046 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transducin/WD40 repeat-like superfamily protein
Sequence

ATGGACAAGTTCCTCGTGCCGGCGCCGCCTCATTGTGGCGAGGAGCCCGCGCCGCCTCCT
AGGAGACACCGGTGGAGGCGCATCATCGCGGAGCTGGACGGCCGCATAGACTCCAGGTTC
CAGCACAGAGATTCGCGCCTCCTTCTTGATTCCTTCACCGAGGTTGGGGCCTTCGATCAC
AAGTATTACATTCATGGCGAGGAAAGGTGTCGGACATACGTGGATCGAATAATTAGTGCT
TCAACTATAAATTTTCATCCAGTAAGGGAGGGTGTTTCAGCAATAGAATTCGATAGAAAG
GGAATATACATTGCATCAGTGACACTCTCAGGGTGTCTGACGGTGCATGACTTTGAGACT
TTGTACTGCTCTAAATATGGCCCACCATGCAGTATGCCAGATGAATCATCAAATTATGTG
CTCCATATATCTAACCGAATTCCCCTAAATGCTGTCCGATGGAATCCAGGAAACCAAGAC
GAGATTGCTTGCACATCAAATCAAAGTGATAACGTTTTCCTCTTTGATATTGGCTATGTC
TCATCTACACCAACTGAAGTTTTGCATAAAGGAAAATCGAAATTCCCCTCGCTCTACTCT
GAATCCTGCAAGAGTTTGACTGATATAACTTTTACTTCAGATGATAAGTCACGGATATTT
GCATCTGGCCTTGATGGGGCAGTGTACATGTGGGACAGGCGATCAAGTAAGACACACTGT
CTTGAGCTTGTGGCATCTCCAGAAGCTCAGTTCAACACTGTCAAGTTAACTGTGGATAAT
CGGACTGTGTTTGGTGCAACTAAAAATGGCACAATTCATGTTTGGGATCTCCGTGGAGGG
AGGGCATCAGCTGCTTTTCAAAGCCACAACGAGGTTCAGCAATTGATGTCAGTGAAATTA
TCAACGTTATTGGGCAAAATTGCATCGCTAAAGGAACAATCAAACATTGTTTCAAGTCCG
ATTCTGTCGATAGACTTCAACCCTAGTTGTTCATATCAATTGGCCTTCCATCTTGATGAT
GGCTGGTATGTATCTCCGAATTCACCTTTAAGGATCATTGTTCATTTTAGAAATTTCCAT
CTATGGTCTGGAGTCCTGAATGTTAACAATCTCAATGTGACTCATCTTCACTGCCCTCCT
CCTGCTTGGTTGGAGGGCACAGACTTGGTGCTGCAAAAGCAATTAAGAAAGCCAACCTGG
CTGCTGACATCTTCAATCTATGCAGTTGGATCTTCCTCATATGATGGAATCTATCTACTA
GACTTTCATCCAGATACCAGCTCTGCATGCCATGTGGACTACAAAGAGGAAACAAGAGTC
TCCGGGGAAAATCAACCTGCAGGAAACAAGTTTGTTCCTTTATCCCAAAGGGTGCTTTCC
TGTGCAGCCCATCCACTCAGTCACACCATAATTGCTGGTACACAGTTCTCATCGTTGCTC
ATGTTATCACAAAAGTACAAGAGTATCAGAAATCCAGAGCCTTGA

Peptide Sequence

PEP ID

Zm00001d017046_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:5:183596128:183610956:-1 gene:Zm00001d017046 transcript:Zm00001d017046_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transducin/WD40 repeat-like superfamily protein
Sequence

MDKFLVPAPPHCGEEPAPPPRRHRWRRIIAELDGRIDSRFQHRDSRLLLDSFTEVGAFDH
KYYIHGEERCRTYVDRIISASTINFHPVREGVSAIEFDRKGIYIASVTLSGCLTVHDFET
LYCSKYGPPCSMPDESSNYVLHISNRIPLNAVRWNPGNQDEIACTSNQSDNVFLFDIGYV
SSTPTEVLHKGKSKFPSLYSESCKSLTDITFTSDDKSRIFASGLDGAVYMWDRRSSKTHC
LELVASPEAQFNTVKLTVDNRTVFGATKNGTIHVWDLRGGRASAAFQSHNEVQQLMSVKL
STLLGKIASLKEQSNIVSSPILSIDFNPSCSYQLAFHLDDGWYVSPNSPLRIIVHFRNFH
LWSGVLNVNNLNVTHLHCPPPAWLEGTDLVLQKQLRKPTWLLTSSIYAVGSSSYDGIYLL
DFHPDTSSACHVDYKEETRVSGENQPAGNKFVPLSQRVLSCAAHPLSHTIIAGTQFSSLL
MLSQKYKSIRNPEP

Transcript Sequence

Transcript ID

Zm00001d017046_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:183596128:183610956:-1 gene:Zm00001d017046 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transducin/WD40 repeat-like superfamily protein
Sequence

GCCTGTTTGGTAATTGGTACTCGGCTCCACTCGGCGAGATTCGGGAGCGCGCTTCCAAAC
GCCGCCGCGATTCGGCATCCTGCTCGCGTGAGAAGCGCTCATCCGGCATTCCGGCTCCAA
CCGTCCATTCTCCGCCCCGCTTCGCCTTTTTTCCCGTCGCTTCCTTCTCCGCTGCTCCCG
CCGCCCTTCTCCGGCAGGATTCGACGGCGGCGGCGGTCTCTGCGAGCCTCCTCTTACTTC
ACGGCTGCCTGGAGGGCTTCCCGAGCCGCGGCGATCTCTCACAGCTCGCCTTCCTCGTCA
TCCTGCACCGCTGCGGCCTCCCGCGCCGTCGAGAGTGAGCGAGTTCGGGAGCGCTACCGC
TACCAAACATGGAGCTTAGCTGGAGCGGGAGCCCGTGTGAGCTGGTTGGGAGTCCTACCA
AACAGGCATTCTAACCCTAATCGAGTGGTGCCTTCCCTAGCCGTCGGCTATGGACAAGTT
CCTCGTGCCGGCGCCGCCTCATTGTGGCGAGGAGCCCGCGCCGCCTCCTAGGAGACACCG
GTGGAGGCGCATCATCGCGGAGCTGGACGGCCGCATAGACTCCAGGTTCCAGCACAGAGA
TTCGCGCCTCCTTCTTGATTCCTTCACCGAGGTTGGGGCCTTCGATCACAAGTATTACAT
TCATGGCGAGGAAAGGTGTCGGACATACGTGGATCGAATAATTAGTGCTTCAACTATAAA
TTTTCATCCAGTAAGGGAGGGTGTTTCAGCAATAGAATTCGATAGAAAGGGAATATACAT
TGCATCAGTGACACTCTCAGGGTGTCTGACGGTGCATGACTTTGAGACTTTGTACTGCTC
TAAATATGGCCCACCATGCAGTATGCCAGATGAATCATCAAATTATGTGCTCCATATATC
TAACCGAATTCCCCTAAATGCTGTCCGATGGAATCCAGGAAACCAAGACGAGATTGCTTG
CACATCAAATCAAAGTGATAACGTTTTCCTCTTTGATATTGGCTATGTCTCATCTACACC
AACTGAAGTTTTGCATAAAGGAAAATCGAAATTCCCCTCGCTCTACTCTGAATCCTGCAA
GAGTTTGACTGATATAACTTTTACTTCAGATGATAAGTCACGGATATTTGCATCTGGCCT
TGATGGGGCAGTGTACATGTGGGACAGGCGATCAAGTAAGACACACTGTCTTGAGCTTGT
GGCATCTCCAGAAGCTCAGTTCAACACTGTCAAGTTAACTGTGGATAATCGGACTGTGTT
TGGTGCAACTAAAAATGGCACAATTCATGTTTGGGATCTCCGTGGAGGGAGGGCATCAGC
TGCTTTTCAAAGCCACAACGAGGTTCAGCAATTGATGTCAGTGAAATTATCAACGTTATT
GGGCAAAATTGCATCGCTAAAGGAACAATCAAACATTGTTTCAAGTCCGATTCTGTCGAT
AGACTTCAACCCTAGTTGTTCATATCAATTGGCCTTCCATCTTGATGATGGCTGGTATGT
ATCTCCGAATTCACCTTTAAGGATCATTGTTCATTTTAGAAATTTCCATCTATGGTCTGG
AGTCCTGAATGTTAACAATCTCAATGTGACTCATCTTCACTGCCCTCCTCCTGCTTGGTT
GGAGGGCACAGACTTGGTGCTGCAAAAGCAATTAAGAAAGCCAACCTGGCTGCTGACATC
TTCAATCTATGCAGTTGGATCTTCCTCATATGATGGAATCTATCTACTAGACTTTCATCC
AGATACCAGCTCTGCATGCCATGTGGACTACAAAGAGGAAACAAGAGTCTCCGGGGAAAA
TCAACCTGCAGGAAACAAGTTTGTTCCTTTATCCCAAAGGGTGCTTTCCTGTGCAGCCCA
TCCACTCAGTCACACCATAATTGCTGGTACACAGTTCTCATCGTTGCTCATGTTATCACA
AAAGTACAAGAGTATCAGAAATCCAGAGCCTTGATGACATGCCGTTTCCTCCACGCAGCA
TCTTCAATCGTGCATCTGCAGAATCACAATGGTGTTTGTTCATCTCCATCGTGCATTAAA
GAATTATGTGCAGCATGTAAACCTTGCTTTGCTGGTGCATTGGACACTCACTAGGTTCGA
AGTGCTGCCAGCAATAACCGTCTTTCAAGAACTGATGAATACGCAGCCATTCACAAAAAT
GCACCCATAGAGAAGAAATCTCTTGCTATATATAAAAAAGAATGGCAAGAGATTTCCTCC
CCCATAGATCTCTTATAATCCTCGTCACCAAATCAGCTCTAAAGAGTTGGATCACCACCA
CTGTACACATCGGCTCTGTTTTTCTTGGACATGATTCTTGTAATCGTCGTTTTCTTGGAC
ATGATTCTTTTTTCGATTTTGGACGATGGCGCGATTGGGAGAAGCAAGTTTATTGC