Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d016972_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:5:181704737:181709829:-1 gene:Zm00001d016972 gene_biotype:protein_coding transcript_biotype:protein_coding description:Plasma-membrane choline transporter family protein
Sequence

ATGTCCTCTTCCTCCACCTCCTCCTGCCACGGCAGCGGGAACCCTAGCCCCCCCGCAGCG
GCGGGGGCCGTGTCGGTGGCGGCGGCGGCGGCGGGCCCCGCGGCGTGGCCCAGGCGGCAG
TGCCGGGACGTGTTCTGGCTGGTGGTCTTCCTCCTCCACCTGCTCGTCTTCGGCGCCGCG
CTCGCGCTCTTCGGCCTCAACCGCTTCCACCAGGCCGACCGCTTCAACATCGGCCGCTAC
GCCAACCTCACCGCGGAGCCCTGGGGCACCCCCGCAGGCCCGCCGGACCCCGCGCCCGCG
CCGCCGCCGCCCTCCGTCTACCGCTCCGAGGACCCCTCCGTGCCGCCGTCCGAGCTCACC
GAGACGTACTGGAAGTACTACGGCGCCGCGGGGGCTGTCGGGGCCGCGCTCGCGTGCGCG
TGGCTGGCGGCGGCGGCCTGGAGGAAGGATGGCGGCAAGGTGGTCATGCGGACCGCCGTG
CACTGCCTCACGGCGTACCTCGCGGTCGTCAGCGTCCTGTGCTTCTGGGGGAAGCACTTC
TTCTGGGGCGTCGCTCTGGCCGTCGGCGCCGGCCTGCACTTCCTCTACGTCATGTCTGTG
CTCGATAGGTTTCCCTTCACAATGCTAGTACTGCAGAAGGCAGTAAGAATGGTACGGGAA
CTTCCTGATGTTATGAGAATTGCTTATGCATTTGTGCTAGTCATGCTTTGTTGGATGGCA
TTATGGTCCTTTGGAATTTCTGGCATTGTTGCCTTTGGCATACCAAATGGTGGGCAATGG
TGGCTTCTTTTGATTTTTTCAGTCAGTTTATTTTGGACTGGAGCTGTTCTTAGCAATACA
GTCCATGTCATTGTCTCAGGGATGGTTTTCCTCGTTCTCATTCATGGTGGTCCAGCTGCT
GCAACAATGCCCCCAAAACCTCTTCTGAAATCTCTTCAGTATGCTGTGACAACTTCATTT
GGAAGCATTTGCTATGGATCGCTTTTTACCGCTGCTATTAGGACTTTGCGATGGGAGATT
CGTGGAATTCGTTCTAAAATTGGCAGCAATGAGTGTTTGCTATGTTGTATTGATTTTTTG
TTTCATATTGTGGAGACCCTTGTTCGCTTCTTCAACAAATATGCATATGTACAGATAGCA
GTTAATGGACAGAGTTTCAATCGCTCAGCTAGGGATGCTTGGGAGCTGTTTCAATCCACA
GGCATCGAATCACTTGTTGCTTATGACTGTTCAGGTGCTATCCTTCTAATGAGCACCATT
TTAGGTGGATTGATTACTGGAACCTGCATGGGCGTTTGGACATATTTCAAACAAAGTGAT
AAAGCTGTTATGGTTGGTTCAACATCCATGCTGATGGGTATGATACTGGTTGGACTAACT
GTTGTGGTTGTGGAAAGTGCTGTTACATCAATATACATATGCTATGCCGAGGATCCCCTT
TTGATTCAGAGATGGGATCCCGAATTTTTTGAACAAATGTCAGAAGCGCTACACCAGCGG
CTGCAGTACCGAAGCGCGCGAGCTCGTCAAATATTGAATGGGCGGCTTGATCATTTGCCA
CATACGTCCAGTATTTGA

Peptide Sequence

PEP ID

Zm00001d016972_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:5:181704737:181709829:-1 gene:Zm00001d016972 transcript:Zm00001d016972_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Plasma-membrane choline transporter family protein
Sequence

MSSSSTSSCHGSGNPSPPAAAGAVSVAAAAAGPAAWPRRQCRDVFWLVVFLLHLLVFGAA
LALFGLNRFHQADRFNIGRYANLTAEPWGTPAGPPDPAPAPPPPSVYRSEDPSVPPSELT
ETYWKYYGAAGAVGAALACAWLAAAAWRKDGGKVVMRTAVHCLTAYLAVVSVLCFWGKHF
FWGVALAVGAGLHFLYVMSVLDRFPFTMLVLQKAVRMVRELPDVMRIAYAFVLVMLCWMA
LWSFGISGIVAFGIPNGGQWWLLLIFSVSLFWTGAVLSNTVHVIVSGMVFLVLIHGGPAA
ATMPPKPLLKSLQYAVTTSFGSICYGSLFTAAIRTLRWEIRGIRSKIGSNECLLCCIDFL
FHIVETLVRFFNKYAYVQIAVNGQSFNRSARDAWELFQSTGIESLVAYDCSGAILLMSTI
LGGLITGTCMGVWTYFKQSDKAVMVGSTSMLMGMILVGLTVVVVESAVTSIYICYAEDPL
LIQRWDPEFFEQMSEALHQRLQYRSARARQILNGRLDHLPHTSSI

Transcript Sequence

Transcript ID

Zm00001d016972_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:181704737:181709829:-1 gene:Zm00001d016972 gene_biotype:protein_coding transcript_biotype:protein_coding description:Plasma-membrane choline transporter family protein
Sequence

AGTTAGCCAGTTGCCACTACTCCCCGCATCGCTAATTGCTCTAGGACGTGTCTCGTTAAT
CCTCCCCATTCCTCATACCGCCCGATCCTACCTCCCCAACCGCCAATCGCAGCCATGTCC
TCTTCCTCCACCTCCTCCTGCCACGGCAGCGGGAACCCTAGCCCCCCCGCAGCGGCGGGG
GCCGTGTCGGTGGCGGCGGCGGCGGCGGGCCCCGCGGCGTGGCCCAGGCGGCAGTGCCGG
GACGTGTTCTGGCTGGTGGTCTTCCTCCTCCACCTGCTCGTCTTCGGCGCCGCGCTCGCG
CTCTTCGGCCTCAACCGCTTCCACCAGGCCGACCGCTTCAACATCGGCCGCTACGCCAAC
CTCACCGCGGAGCCCTGGGGCACCCCCGCAGGCCCGCCGGACCCCGCGCCCGCGCCGCCG
CCGCCCTCCGTCTACCGCTCCGAGGACCCCTCCGTGCCGCCGTCCGAGCTCACCGAGACG
TACTGGAAGTACTACGGCGCCGCGGGGGCTGTCGGGGCCGCGCTCGCGTGCGCGTGGCTG
GCGGCGGCGGCCTGGAGGAAGGATGGCGGCAAGGTGGTCATGCGGACCGCCGTGCACTGC
CTCACGGCGTACCTCGCGGTCGTCAGCGTCCTGTGCTTCTGGGGGAAGCACTTCTTCTGG
GGCGTCGCTCTGGCCGTCGGCGCCGGCCTGCACTTCCTCTACGTCATGTCTGTGCTCGAT
AGGTTTCCCTTCACAATGCTAGTACTGCAGAAGGCAGTAAGAATGGTACGGGAACTTCCT
GATGTTATGAGAATTGCTTATGCATTTGTGCTAGTCATGCTTTGTTGGATGGCATTATGG
TCCTTTGGAATTTCTGGCATTGTTGCCTTTGGCATACCAAATGGTGGGCAATGGTGGCTT
CTTTTGATTTTTTCAGTCAGTTTATTTTGGACTGGAGCTGTTCTTAGCAATACAGTCCAT
GTCATTGTCTCAGGGATGGTTTTCCTCGTTCTCATTCATGGTGGTCCAGCTGCTGCAACA
ATGCCCCCAAAACCTCTTCTGAAATCTCTTCAGTATGCTGTGACAACTTCATTTGGAAGC
ATTTGCTATGGATCGCTTTTTACCGCTGCTATTAGGACTTTGCGATGGGAGATTCGTGGA
ATTCGTTCTAAAATTGGCAGCAATGAGTGTTTGCTATGTTGTATTGATTTTTTGTTTCAT
ATTGTGGAGACCCTTGTTCGCTTCTTCAACAAATATGCATATGTACAGATAGCAGTTAAT
GGACAGAGTTTCAATCGCTCAGCTAGGGATGCTTGGGAGCTGTTTCAATCCACAGGCATC
GAATCACTTGTTGCTTATGACTGTTCAGGTGCTATCCTTCTAATGAGCACCATTTTAGGT
GGATTGATTACTGGAACCTGCATGGGCGTTTGGACATATTTCAAACAAAGTGATAAAGCT
GTTATGGTTGGTTCAACATCCATGCTGATGGGTATGATACTGGTTGGACTAACTGTTGTG
GTTGTGGAAAGTGCTGTTACATCAATATACATATGCTATGCCGAGGATCCCCTTTTGATT
CAGAGATGGGATCCCGAATTTTTTGAACAAATGTCAGAAGCGCTACACCAGCGGCTGCAG
TACCGAAGCGCGCGAGCTCGTCAAATATTGAATGGGCGGCTTGATCATTTGCCACATACG
TCCAGTATTTGAATGAATTGCGTGCCAGATATTGATTATCTCTGTGAATCCATTGATACG
TGGGCAGACATTTACAGAAGATTTGGATCTCCCTGCCATTGAAATATATAGACCAAGGAA
GATATTCGAAGCCATTGACGTTCCGAGAACTGGAGTGCCCCAGCAATCTTGTACGCCTTC
AAGAACAAAATGTTTTCAAATCCAAATGAAGCCGTAATGTGGATGCTCATGCTTCTTTGG
TACTGCACCATCGTTTTTTTTATTTGTGTAAGGCTTTTCTGGTAAGGTAGATACTATTAA
ATCCATTTCGAGATTTGTGATGCAGAATGTGTCCGGTTTCAAC