Plant GARDEN
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d016915_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:5:179756717:179759176:1 gene:Zm00001d016915 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cryptochrome-1
Sequence

ATGAACGAACGGTCTTCCGGTACTCACCAATCCCTGTCCCATTCTCGCCGTGCAGACCCG
CTGTCGCTGGTCCGGGACTACCGCGTCAAGGAGCAGCTGGCGGCCGAGGGCATCGACGTG
CAGTCCTTCAATGCCGATCTGCTGTACGAGCCGTGGGAGGTCCTCGACGAAGACCGCCGC
CCCTTCACCATGTTCGCGCCATTCTGGAACAGGTGCCTGTGCATGCCGGACCCCGCCGCA
CCGCTGCTGCCGCCCAAGAGGATCAATTCAGGTGACCTGTCCAGGTGCCCGTGGGACGAG
CTGGTCTTTGAGGACGAGTCCGAGAGGGGCAGCAACGCGCTGCTCGCGCGGGCGTGGTCA
CCAGGGTGGCAGAATGCTGACAAGGCGCTGACGGCCTTCCTCAACGGCCCGCTGATGGAC
TACTCCGTGAACCGCAAGAAGGCCGACAGCGCCAGCACGTCGCTGCTGTCCCCGTACCTG
CACTTCGGCGAGCTCAGCGTCCGGAAGGTCTTCCACCAGGTCCGGATGAAGCAGCTCATG
TGGAGCAATGACGGCAACCACGCCGGCGAGGAGAGCTGCACCCTGTTCCTCCGCTCCATC
GGCCTGCGGGAGTACTCGAGGTACCTCACCTTCAACCACCCCTGCAGCCACGAGAAGCCC
CTCCTGTCGCACCTCAGGTTCTTCCCCTGGGTCGTCAATGAGGTGTACTTCAAGGTCTGG
AGGCAAGGGAGGACCGGCTACCCTCTCGTCGACGCCGGCATGAGGGAGCTCTGGGCCACC
GGCTGGGTCCATGACCGCATACGCGTCGTTGTCTCGAGCTTCTTCGTCAAGGTGCTCCAG
CTGCCATGGCGCTGGGGGATGAAGTACTTCTGGGACACCTTGCTGGATGCTGACCTTGAG
AGCGACGCGCTAGGCTGGCAGTACATTTCTGGGTCTCTCCCTGATGGCCGTGAGCTTGAC
CGCATCGACAACCCTCAGTTTGAAGGGTACAAGTTTGATCCGCACGGGGAGTACGTCCGG
CGATGGCTACCGGAGCTGGCAAGGCTGCCAACGGAATGGATACACCATCCCTGGGATGCA
CCTGAGTCTGTGCTTCAGGCTGCAGGGGTTGAGCTAGGATCTAACTACCCACGCCCCATT
GTCGAGTTAGATGCAGCCAATTCCAGGTTGCAGGATGCCCTGTCAGAGATGTGGGAGCTT
GAGGCAGCCTCTCGTGCTGCCATGGAGAACGGAATGGAAGAAGGCCTCGGCGATTCCACG
GATGAGCCGCCGATCGACTTCCCTCAAGAACTACGGATGGAAGTGGACCGACAGCCGGTT
CAACCTGCTATCCACGCACCGGGAGTGACTGGTCGGAGACGAGAGGATCAGATGGTGCCC
AGCATGACTTCCTCGTTCATTAGAGCTGAGACCGAACTCACTGCAGATTTTGGCCACACC
AGTGAGGACAGTAGGCCAGAAGTGCCATCAAACATCCACCATTTGCAGGCTCGCCCGGAG
AGGGAAGAGACAGTTGACGGTGGCACTGGCAATGCTGTCAGGGTGCATGGCAACCATCAC
CAGCAGAACCTTCAGAACAACATGCACCGCGTGCTAGGTATCGCTCCATCGATTTCAGAG
GCATCAAGCAGTTGGACGGGCAGGGATGGTGGAGTGGTACCAGTCTGGTCGCCTCCGGCA
GCTTCGGGACACTCTGATTCTTATGCTGCCGATGAGGCTGACATTTCCAGTAGGGGTTAT
CTGGACAGGCATCCACAGTCACATACGATGATGAACTGGAGCCAGCTCTCTCAGTCATTG
ACAACAGGGTGGGAAGTGGATAATTAG

Peptide Sequence

PEP ID

Zm00001d016915_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:5:179756717:179759176:1 gene:Zm00001d016915 transcript:Zm00001d016915_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cryptochrome-1
Sequence

MNERSSGTHQSLSHSRRADPLSLVRDYRVKEQLAAEGIDVQSFNADLLYEPWEVLDEDRR
PFTMFAPFWNRCLCMPDPAAPLLPPKRINSGDLSRCPWDELVFEDESERGSNALLARAWS
PGWQNADKALTAFLNGPLMDYSVNRKKADSASTSLLSPYLHFGELSVRKVFHQVRMKQLM
WSNDGNHAGEESCTLFLRSIGLREYSRYLTFNHPCSHEKPLLSHLRFFPWVVNEVYFKVW
RQGRTGYPLVDAGMRELWATGWVHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE
SDALGWQYISGSLPDGRELDRIDNPQFEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDA
PESVLQAAGVELGSNYPRPIVELDAANSRLQDALSEMWELEAASRAAMENGMEEGLGDST
DEPPIDFPQELRMEVDRQPVQPAIHAPGVTGRRREDQMVPSMTSSFIRAETELTADFGHT
SEDSRPEVPSNIHHLQARPEREETVDGGTGNAVRVHGNHHQQNLQNNMHRVLGIAPSISE
ASSSWTGRDGGVVPVWSPPAASGHSDSYAADEADISSRGYLDRHPQSHTMMNWSQLSQSL
TTGWEVDN

Transcript Sequence

Transcript ID

Zm00001d016915_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:179756717:179759176:1 gene:Zm00001d016915 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cryptochrome-1
Sequence

ACTGGCACTCACCAAACAACCTGCATCTTTCTTCTCCGGAGTTTCCTTTTCTCCCAAGAA
CCATCATTAAAGAAAAAAAAAACTTTTAGCACCTTACCATCTGGGCCGGCTGATATGAAC
GAACGGTCTTCCGGTACTCACCAATCCCTGTCCCATTCTCGCCGTGCAGACCCGCTGTCG
CTGGTCCGGGACTACCGCGTCAAGGAGCAGCTGGCGGCCGAGGGCATCGACGTGCAGTCC
TTCAATGCCGATCTGCTGTACGAGCCGTGGGAGGTCCTCGACGAAGACCGCCGCCCCTTC
ACCATGTTCGCGCCATTCTGGAACAGGTGCCTGTGCATGCCGGACCCCGCCGCACCGCTG
CTGCCGCCCAAGAGGATCAATTCAGGTGACCTGTCCAGGTGCCCGTGGGACGAGCTGGTC
TTTGAGGACGAGTCCGAGAGGGGCAGCAACGCGCTGCTCGCGCGGGCGTGGTCACCAGGG
TGGCAGAATGCTGACAAGGCGCTGACGGCCTTCCTCAACGGCCCGCTGATGGACTACTCC
GTGAACCGCAAGAAGGCCGACAGCGCCAGCACGTCGCTGCTGTCCCCGTACCTGCACTTC
GGCGAGCTCAGCGTCCGGAAGGTCTTCCACCAGGTCCGGATGAAGCAGCTCATGTGGAGC
AATGACGGCAACCACGCCGGCGAGGAGAGCTGCACCCTGTTCCTCCGCTCCATCGGCCTG
CGGGAGTACTCGAGGTACCTCACCTTCAACCACCCCTGCAGCCACGAGAAGCCCCTCCTG
TCGCACCTCAGGTTCTTCCCCTGGGTCGTCAATGAGGTGTACTTCAAGGTCTGGAGGCAA
GGGAGGACCGGCTACCCTCTCGTCGACGCCGGCATGAGGGAGCTCTGGGCCACCGGCTGG
GTCCATGACCGCATACGCGTCGTTGTCTCGAGCTTCTTCGTCAAGGTGCTCCAGCTGCCA
TGGCGCTGGGGGATGAAGTACTTCTGGGACACCTTGCTGGATGCTGACCTTGAGAGCGAC
GCGCTAGGCTGGCAGTACATTTCTGGGTCTCTCCCTGATGGCCGTGAGCTTGACCGCATC
GACAACCCTCAGTTTGAAGGGTACAAGTTTGATCCGCACGGGGAGTACGTCCGGCGATGG
CTACCGGAGCTGGCAAGGCTGCCAACGGAATGGATACACCATCCCTGGGATGCACCTGAG
TCTGTGCTTCAGGCTGCAGGGGTTGAGCTAGGATCTAACTACCCACGCCCCATTGTCGAG
TTAGATGCAGCCAATTCCAGGTTGCAGGATGCCCTGTCAGAGATGTGGGAGCTTGAGGCA
GCCTCTCGTGCTGCCATGGAGAACGGAATGGAAGAAGGCCTCGGCGATTCCACGGATGAG
CCGCCGATCGACTTCCCTCAAGAACTACGGATGGAAGTGGACCGACAGCCGGTTCAACCT
GCTATCCACGCACCGGGAGTGACTGGTCGGAGACGAGAGGATCAGATGGTGCCCAGCATG
ACTTCCTCGTTCATTAGAGCTGAGACCGAACTCACTGCAGATTTTGGCCACACCAGTGAG
GACAGTAGGCCAGAAGTGCCATCAAACATCCACCATTTGCAGGCTCGCCCGGAGAGGGAA
GAGACAGTTGACGGTGGCACTGGCAATGCTGTCAGGGTGCATGGCAACCATCACCAGCAG
AACCTTCAGAACAACATGCACCGCGTGCTAGGTATCGCTCCATCGATTTCAGAGGCATCA
AGCAGTTGGACGGGCAGGGATGGTGGAGTGGTACCAGTCTGGTCGCCTCCGGCAGCTTCG
GGACACTCTGATTCTTATGCTGCCGATGAGGCTGACATTTCCAGTAGGGGTTATCTGGAC
AGGCATCCACAGTCACATACGATGATGAACTGGAGCCAGCTCTCTCAGTCATTGACAACA
GGGTGGGAAGTGGATAATTAGCGCTGTGTGTCCGGATTTAATTGCTTAGGATTTCGGCAG
AGAGAATTATACATATGTAAATTATCAGATTTTGTTCGTCTATATAGCCTTGGTGTGCAT
GC