Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d016855_T007
CDS Infomation

cds chromosome:B73_RefGen_v4:5:178400398:178406327:1 gene:Zm00001d016855 gene_biotype:protein_coding transcript_biotype:protein_coding description:Chloride channel

Sequence

ATGGACATGGACGGCAACTCCCCGCGGCGGCCTCCCCGCCGGCCTGAGCGGGAGGGGAGC
TACGGCTACGACATCGAGAGCATGGACGGCTCCGGGGCCGGGGGCCCGCCGCCGTGGAGC
GCGCACCACAACGGCTCCTCCGAGGCCCTGCTCCGCTACGACGACGGCGGCGCCGACCGC
GGGAGCACGCAACAGCCGCTGCTGCGGAAGCGCACCGTGAACACGACCTCGCAGATCGCT
ATCGTCGGTGCCAACGTCTGCCCCATCGAGAGCTTGGACTACGAAGTCGTGGAGAATGAC
CTTTTCAAGCAGGACTGGCGATCAAGAAAGAAGAAGCAGATATTTCAGTACATCGTACTC
AAGTGGAGCTTGGTGCTCCTTATTGGCCTATTAACTGGATTTGTCGGCTTCTTCAACAAT
CTTGCAGTTGAGAACATTGCTGGATTCAAATTGCTGCTCACGAGCGATCTTATGCTCAAG
GGGAGGTATATTAGAGCATTTTTTGTGTATGGAGGTTGCAATTTAGTTTTGGCAGCAGCT
GCAGCAGCAATCTGTGCTTATATTGCACCTGCTGCTGCTGGGTCTGGTATTCCTGAAGTC
AAAGCTTATCTTAATGGGGTTGATGCCTATTCTATATTAGCTCCTAGCACACTCTTTGTT
AAGATTTTTGGTTCAATACTTGGAGTTTCAGCTGGATTCGTGCTAGGAAAGGAAGGGCCC
ATGGTACATACAGGGGCATGCATTGCCAACTTGCTTGGTCAGGGTGGATCACGCAAGTAT
CATCTTACTTGTAACTGGCTACGCTACTTTAAGAATGACAGAGACAGGAGAGATTTGATC
ACATGTGGATCTGCAGCTGGTGTGGCGGCTGCCTTCCGTGCACCTGTTGGCGGTGTTCTG
TTTGCTCTTGAAGAAGCAGCATCATGGTGGCGAAGTGCTCTTTTGTGGAGAACATTCTTT
ACAACTGCTGTTGTTGCGGTGGTATTGAGGGGGCTGATTGAGTTCTGTCGTAGTGGAAAA
TGTGGTCTCTTTGGGCAAGGTGGATTGATCATGTTTGATCTCAGTTCAACTGTTGCAGTC
TACAGTACTCCAGATCTAATTGCAATTATAGTCCTTGGGATAATTGGTGGAATCTTTGGA
GGCCTCTTCAACTATCTGTTGGACAAGATCCTCCGAGTTTATAGTATTATCAACGAGAGA
GGTGCTCCATTCAAGATCCTTCTCACTATAACAATATCAATAATCACATCAATGTGTTCC
TATGGTCTTCCTTGGCTTGCTGCATGCACTCCATGCCCTGTTGATGCTGTGGAGCAGTGT
CCCACTGTTGGCCGCTCCGGAAATTATAAGAACTTCCAATGCCCACCAGGACATTACAAT
GGTCTTGCATCACTCTTCTTCAACACAAATGATGATGCCATCCGCAATCTCTTCAGCAAC
GGCACATCGACTGAGTTCCAAATGTCATCTCTTTTCATCTTCTTCACTGCTATTTACTGC
CTTGGACTAGTGACTTACGGTATTGCTGTCCCATCTGGTCTCTTTATCCCTGTTATTCTT
GCTGGAGCCACGTATGGGCGCATAGTGGGAACTCTTCTTGGATCCATATCTGATCTTGAT
CCTGGCCTTTTTGCCCTACTTGGCGCAGCATCTTTTCTTGGTGGGACAATGAGAATGACT
GTGTCAGTCTGTGTGATCCTTCTAGAGCTCACCAACGATCTCCCCATGCTCCCTTTAGTC
ATGCTTGTTCTTCTCATATCCAAGACCATAGCAGATAGCTTTAACAAGGGAGTTTATGAT
CAGATAGTGGTGATGAAAGGCTTGCCGTACATGGAGGCTCATGCTGAACCATACATGAGG
CACTTGGTTGCTGGTGATGTGGTGTCTGGCCCACTAATCACCTTTTCTGGGGTTGAGAAG
GTGGGGAACATTGTTCATGCATTAAGGTTAACGGGCCACAATGGTTTCCCTGTGCTTGAT
GAGCCACCCATAACGGAAACCCCGGAACTGGTTGGGCTTGTGACTAGGTCTCATTTATTA
GTTTTGCTGAACAGCAAGAATTTCATGAAGGGACGGGTTAAAACTAGTGGTAGCTTCGTT
CTGCGAAGATTTGGTGCATTTGACTTTGCGAAACCAGGTTCAGGTAAAGGTTTGAAAATT
GAGGACCTGGATTTCACTGATGAGGAGATGGACATGTATGTGGATCTCCACCCGATCACA
AATACATCACCTTACACAGTGGTTGAGACGATGTCACTGGCAAAAGCAGCAATCCTTTTC
CGGGAACTTGGTTTGAGGCACCTTTTGGTTGTGCCAAAGACACCAGACAGGCCTCCCATA
GTCGGGATTCTCACAAGGCATGACTTCATGCCTGAGCACATTCACAGTCTGTTCCCAAAC
CTCAATCCTCACAAGTACCATTCAGCATCAATGGCAGGTTGA

Peptide Sequence

PEP ID

Zm00001d016855_P007
PEP Infomation

pep chromosome:B73_RefGen_v4:5:178400398:178406327:1 gene:Zm00001d016855 transcript:Zm00001d016855_T007 gene_biotype:protein_coding transcript_biotype:protein_coding description:Chloride channel

Sequence

MDMDGNSPRRPPRRPEREGSYGYDIESMDGSGAGGPPPWSAHHNGSSEALLRYDDGGADR
GSTQQPLLRKRTVNTTSQIAIVGANVCPIESLDYEVVENDLFKQDWRSRKKKQIFQYIVL
KWSLVLLIGLLTGFVGFFNNLAVENIAGFKLLLTSDLMLKGRYIRAFFVYGGCNLVLAAA
AAAICAYIAPAAAGSGIPEVKAYLNGVDAYSILAPSTLFVKIFGSILGVSAGFVLGKEGP
MVHTGACIANLLGQGGSRKYHLTCNWLRYFKNDRDRRDLITCGSAAGVAAAFRAPVGGVL
FALEEAASWWRSALLWRTFFTTAVVAVVLRGLIEFCRSGKCGLFGQGGLIMFDLSSTVAV
YSTPDLIAIIVLGIIGGIFGGLFNYLLDKILRVYSIINERGAPFKILLTITISIITSMCS
YGLPWLAACTPCPVDAVEQCPTVGRSGNYKNFQCPPGHYNGLASLFFNTNDDAIRNLFSN
GTSTEFQMSSLFIFFTAIYCLGLVTYGIAVPSGLFIPVILAGATYGRIVGTLLGSISDLD
PGLFALLGAASFLGGTMRMTVSVCVILLELTNDLPMLPLVMLVLLISKTIADSFNKGVYD
QIVVMKGLPYMEAHAEPYMRHLVAGDVVSGPLITFSGVEKVGNIVHALRLTGHNGFPVLD
EPPITETPELVGLVTRSHLLVLLNSKNFMKGRVKTSGSFVLRRFGAFDFAKPGSGKGLKI
EDLDFTDEEMDMYVDLHPITNTSPYTVVETMSLAKAAILFRELGLRHLLVVPKTPDRPPI
VGILTRHDFMPEHIHSLFPNLNPHKYHSASMAG

Transcript Sequence

Transcript ID

Zm00001d016855_T007
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:178400398:178406327:1 gene:Zm00001d016855 gene_biotype:protein_coding transcript_biotype:protein_coding description:Chloride channel

Sequence

ATAATAGCAATGAGCCATTATTTGTACAACACGCACGGAATAGTAACGTGTTGACCCCAC
AATCTTTTCCCCCCCTCTGCATAGCCACATAGGAGTAATTAACGCGATCCTAATCGTTTC
AACTCTACCATCCCAATTTATTTCTCGCAGGCTCTGCTCGGACATTGCGTAATCCAAGAG
ACCGTCAAGGCAAGGCAAAGCCAACACCAGACGAGTCGAGAACACCGCAGCAGAGCGCGG
CGTCCAATGGACATGGACGGCAACTCCCCGCGGCGGCCTCCCCGCCGGCCTGAGCGGGAG
GGGAGCTACGGCTACGACATCGAGAGCATGGACGGCTCCGGGGCCGGGGGCCCGCCGCCG
TGGAGCGCGCACCACAACGGCTCCTCCGAGGCCCTGCTCCGCTACGACGACGGCGGCGCC
GACCGCGGGAGCACGCAACAGCCGCTGCTGCGGAAGCGCACCGTGAACACGACCTCGCAG
ATCGCTATCGTCGGTGCCAACGTCTGCCCCATCGAGAGCTTGGACTACGAAGTCGTGGAG
AATGACCTTTTCAAGCAGGACTGGCGATCAAGAAAGAAGAAGCAGATATTTCAGTACATC
GTACTCAAGTGGAGCTTGGTGCTCCTTATTGGCCTATTAACTGGATTTGTCGGCTTCTTC
AACAATCTTGCAGTTGAGAACATTGCTGGATTCAAATTGCTGCTCACGAGCGATCTTATG
CTCAAGGGGAGGTATATTAGAGCATTTTTTGTGTATGGAGGTTGCAATTTAGTTTTGGCA
GCAGCTGCAGCAGCAATCTGTGCTTATATTGCACCTGCTGCTGCTGGGTCTGGTATTCCT
GAAGTCAAAGCTTATCTTAATGGGGTTGATGCCTATTCTATATTAGCTCCTAGCACACTC
TTTGTTAAGATTTTTGGTTCAATACTTGGAGTTTCAGCTGGATTCGTGCTAGGAAAGGAA
GGGCCCATGGTACATACAGGGGCATGCATTGCCAACTTGCTTGGTCAGGGTGGATCACGC
AAGTATCATCTTACTTGTAACTGGCTACGCTACTTTAAGAATGACAGAGACAGGAGAGAT
TTGATCACATGTGGATCTGCAGCTGGTGTGGCGGCTGCCTTCCGTGCACCTGTTGGCGGT
GTTCTGTTTGCTCTTGAAGAAGCAGCATCATGGTGGCGAAGTGCTCTTTTGTGGAGAACA
TTCTTTACAACTGCTGTTGTTGCGGTGGTATTGAGGGGGCTGATTGAGTTCTGTCGTAGT
GGAAAATGTGGTCTCTTTGGGCAAGGTGGATTGATCATGTTTGATCTCAGTTCAACTGTT
GCAGTCTACAGTACTCCAGATCTAATTGCAATTATAGTCCTTGGGATAATTGGTGGAATC
TTTGGAGGCCTCTTCAACTATCTGTTGGACAAGATCCTCCGAGTTTATAGTATTATCAAC
GAGAGAGGTGCTCCATTCAAGATCCTTCTCACTATAACAATATCAATAATCACATCAATG
TGTTCCTATGGTCTTCCTTGGCTTGCTGCATGCACTCCATGCCCTGTTGATGCTGTGGAG
CAGTGTCCCACTGTTGGCCGCTCCGGAAATTATAAGAACTTCCAATGCCCACCAGGACAT
TACAATGGTCTTGCATCACTCTTCTTCAACACAAATGATGATGCCATCCGCAATCTCTTC
AGCAACGGCACATCGACTGAGTTCCAAATGTCATCTCTTTTCATCTTCTTCACTGCTATT
TACTGCCTTGGACTAGTGACTTACGGTATTGCTGTCCCATCTGGTCTCTTTATCCCTGTT
ATTCTTGCTGGAGCCACGTATGGGCGCATAGTGGGAACTCTTCTTGGATCCATATCTGAT
CTTGATCCTGGCCTTTTTGCCCTACTTGGCGCAGCATCTTTTCTTGGTGGGACAATGAGA
ATGACTGTGTCAGTCTGTGTGATCCTTCTAGAGCTCACCAACGATCTCCCCATGCTCCCT
TTAGTCATGCTTGTTCTTCTCATATCCAAGACCATAGCAGATAGCTTTAACAAGGGAGTT
TATGATCAGATAGTGGTGATGAAAGGCTTGCCGTACATGGAGGCTCATGCTGAACCATAC
ATGAGGCACTTGGTTGCTGGTGATGTGGTGTCTGGCCCACTAATCACCTTTTCTGGGGTT
GAGAAGGTGGGGAACATTGTTCATGCATTAAGGTTAACGGGCCACAATGGTTTCCCTGTG
CTTGATGAGCCACCCATAACGGAAACCCCGGAACTGGTTGGGCTTGTGACTAGGTCTCAT
TTATTAGTTTTGCTGAACAGCAAGAATTTCATGAAGGGACGGGTTAAAACTAGTGGTAGC
TTCGTTCTGCGAAGATTTGGTGCATTTGACTTTGCGAAACCAGGTTCAGGTAAAGGTTTG
AAAATTGAGGACCTGGATTTCACTGATGAGGAGATGGACATGTATGTGGATCTCCACCCG
ATCACAAATACATCACCTTACACAGTGGTTGAGACGATGTCACTGGCAAAAGCAGCAATC
CTTTTCCGGGAACTTGGTTTGAGGCACCTTTTGGTTGTGCCAAAGACACCAGACAGGCCT
CCCATAGTCGGGATTCTCACAAGGCATGACTTCATGCCTGAGCACATTCACAGTCTGTTC
CCAAACCTCAATCCTCACAAGTACCATTCAGCATCAATGGCAGGTTGACAAGGAGACTCT
TTCTGCTTCTCATCTATTTGGCATTATTCGGGTGCTGGCTGTATGTAAATTGCAAAGGTG
TATGCGTATCTGGTTTTCAATTGGATCCATCTCATCTTCTCTACATAGTTTTGTTTGTGT
GGATTTTGTAGCATATGCTCTTTTTGCAATAAAAAAAATGTGGCAGTTGTTTGGCTGGTG
ACTGCCTATTATGAGCCTGCGGCAATAAATGTTCAGCAAATTGCGGAGTAAACATTGAGA
GCTCCAGAACATGGAGAGAAAGTGTGTATTGTATATTTGCGTTGTTCCTGTAAAGCATGT
TTAGTCAAACTCGAATATTGTCTATAACACCGAGTAAATCTCAGGCGGAAACATGGGCGA
GCTTTCTAAGTACAGATTTCTTGCTATTGTAAGTACTTGAATTGAGATTCGT