Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d016849_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:5:178261464:178266129:1 gene:Zm00001d016849 gene_biotype:protein_coding transcript_biotype:protein_coding description:TPX2 (targeting protein for Xklp2) protein family
Sequence

ATGGCTGCTGATGTTGGGCTTCGGTTCAACGGCTGGTCATACTCGGATTTGCCTTACAAC
GACCACAATGCACAGGATTCATCAGTTCAGGAAATGGTGCTCAACCATGGCTCGGTGTCA
TTCGGTAGATTTGCTGCAGAATCATTGTCATGGGAAAGAAGGTCAGTGTTTGAACATAAC
AGACGCCAAGAGGAACTAAGCAAGCTCACAGCCCCTGGTTTGGTTGCACAAAAGAAGGCT
TTCTTTGAAGAATATTACAAGAGGGCAAGACATCTCAAGGCTCAGGGGGTATTGCACCAG
GCTGGAGCCGCAGTGGAGGAGAACGATAGCAGCCAGGCAGATGAATTGCCAGCAGCTATG
TCTGAAGATCCAGTAGCCACTGCTCCAAGTTCTAGTTTTGAGCCTTCCACTGATGTTGAG
AGCAAATGCCAGGATGCTCATGAGCACGGGTACTTGACATTTAATCCTTTATTTTCTCAG
ACAGCAAGCTTGCCAAACATTCAGGAGGAGAGTTCTAGCTCTGGTCAAAAGCATGGATTC
AGTTGTGAAACTATTGAGAGAAAAGTTCTTGCACCAAGACGTGTGGCATCAAATGATAAT
GATCAAAGCAATATTGCTGGATCAAGGATTGTCTTACCAATAGTCAGTCTACAATCAGAA
TACCTCAAAGCTGATCCTGAGAAGAGTGAGGCAAGCAAAAATGTACCTATTATTAATAGG
TCAAAAAAGGTATCAAAGGACCTGGCAACTTCTGTTATCAGCATCCCAAGGGTAGATTTA
AGAAGGAATTCAGAAAACGGACCCTCTCGAGACTTGGAGGATCCATTCCACAAGAGAGTT
GAGATGAAATTGCGTGCTTTATCTGATCGGATGGATGCTGACAGAACTACGGCCTCTAGT
AGATCATCCTCTTACCAACCTCCTGAGAGAGCTATGACCTCAGCTAGATCTGCATATCAA
GATAGACTAGCAATATCTTCTAGATCCAGTGTGTCTCAGAACACTAGTAAAGCCTTGGCA
CCTTCTAAATTAGCTGCTCAAGCTTCCCATAAATTTCTTAAAGGTGTGCAGCGTTTAGAT
GCCATGCCCCGTGGTATTTTCGTTAATAAAGGATCAAGTGCTTCTCTTGTTGCTTCTTGC
AACAGTAGTGCAACTGGGAAGTTGTCTGCCAAGATTTTGGTGGCACCCAGTTCGTCTCAA
GTTGGTGCAAAGACTTCCAGGACTGCTCAGGTTACACCGAAAAGAGCAGCAGGACCTACC
AGTGTAAACAATGTGTCACACAATAAAAGAAGCAGCTCCGAGAATCTCCCTCGTGCTGCA
AAGGCGCCTAAGATATCAAAAGTGATGAATGCGGTGTCCAAGGCTGAAGCTGTGCAGAAG
TCAAAATCATCAAGCAATCTTGTTGGAGGAAGAAATTTATCGACAAAGCGCTCCGCAAAC
TGCAATGAAGAAAACAGAAAGGCGATCCCGTCGCGCAAGGTAAACATGGCTGAATGCACG
AGGAGCAATCTGAAAGGTGGCCCATCACTGACTAAGAACAAGCCACGTCGCAAGAGAATA
TCTGGATGTGCAAGGCAGTATCGTGCCGCTGCTGTGCTGTCGTTACGGCCCGTGACATTT
CTGGCCGTCGCGTTTGTTGCTGCTTTGCGAAGGGGATACACCGGAACCATTTGA

Peptide Sequence

PEP ID

Zm00001d016849_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:5:178261464:178266129:1 gene:Zm00001d016849 transcript:Zm00001d016849_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:TPX2 (targeting protein for Xklp2) protein family
Sequence

MAADVGLRFNGWSYSDLPYNDHNAQDSSVQEMVLNHGSVSFGRFAAESLSWERRSVFEHN
RRQEELSKLTAPGLVAQKKAFFEEYYKRARHLKAQGVLHQAGAAVEENDSSQADELPAAM
SEDPVATAPSSSFEPSTDVESKCQDAHEHGYLTFNPLFSQTASLPNIQEESSSSGQKHGF
SCETIERKVLAPRRVASNDNDQSNIAGSRIVLPIVSLQSEYLKADPEKSEASKNVPIINR
SKKVSKDLATSVISIPRVDLRRNSENGPSRDLEDPFHKRVEMKLRALSDRMDADRTTASS
RSSSYQPPERAMTSARSAYQDRLAISSRSSVSQNTSKALAPSKLAAQASHKFLKGVQRLD
AMPRGIFVNKGSSASLVASCNSSATGKLSAKILVAPSSSQVGAKTSRTAQVTPKRAAGPT
SVNNVSHNKRSSSENLPRAAKAPKISKVMNAVSKAEAVQKSKSSSNLVGGRNLSTKRSAN
CNEENRKAIPSRKVNMAECTRSNLKGGPSLTKNKPRRKRISGCARQYRAAAVLSLRPVTF
LAVAFVAALRRGYTGTI

Transcript Sequence

Transcript ID

Zm00001d016849_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:178261464:178266129:1 gene:Zm00001d016849 gene_biotype:protein_coding transcript_biotype:protein_coding description:TPX2 (targeting protein for Xklp2) protein family
Sequence

AGTAGCAGTAGTCCACCCTGTCCATTCCCGGCACACCGCGACAGCATTTAACTAGCGTGC
GTCACCTCCCGTCCTACTGCTTCCTCTCGAGGCTCCGAGCCGCCCGTTAGTAGTGTAGAC
CTGCCTCCGCCTTCTCCTCGCCAACGCGCCACCGCAGTAAAGAGCGCGGATTAATTCCAG
GGCGAGGGGGGAGACTCACCTCCATTACGCTCCGTCCCCCTTCCCCGGCGTGCACCGTGC
AGTAGGTATCTGTGCATTCCTGCCCTGCTGTGGTTGGCTAGGTAGGGGTGGTAACTGGTA
AGAACAGCAAGAACCAACCATGGCTGCTGATGTTGGGCTTCGGTTCAACGGCTGGTCATA
CTCGGATTTGCCTTACAACGACCACAATGCACAGGATTCATCAGTTCAGGAAATGGTGCT
CAACCATGGCTCGGTGTCATTCGGTAGATTTGCTGCAGAATCATTGTCATGGGAAAGAAG
GTCAGTGTTTGAACATAACAGACGCCAAGAGGAACTAAGCAAGCTCACAGCCCCTGGTTT
GGTTGCACAAAAGAAGGCTTTCTTTGAAGAATATTACAAGAGGGCAAGACATCTCAAGGC
TCAGGGGGTATTGCACCAGGCTGGAGCCGCAGTGGAGGAGAACGATAGCAGCCAGGCAGA
TGAATTGCCAGCAGCTATGTCTGAAGATCCAGTAGCCACTGCTCCAAGTTCTAGTTTTGA
GCCTTCCACTGATGTTGAGAGCAAATGCCAGGATGCTCATGAGCACGGGTACTTGACATT
TAATCCTTTATTTTCTCAGACAGCAAGCTTGCCAAACATTCAGGAGGAGAGTTCTAGCTC
TGGTCAAAAGCATGGATTCAGTTGTGAAACTATTGAGAGAAAAGTTCTTGCACCAAGACG
TGTGGCATCAAATGATAATGATCAAAGCAATATTGCTGGATCAAGGATTGTCTTACCAAT
AGTCAGTCTACAATCAGAATACCTCAAAGCTGATCCTGAGAAGAGTGAGGCAAGCAAAAA
TGTACCTATTATTAATAGGTCAAAAAAGGTATCAAAGGACCTGGCAACTTCTGTTATCAG
CATCCCAAGGGTAGATTTAAGAAGGAATTCAGAAAACGGACCCTCTCGAGACTTGGAGGA
TCCATTCCACAAGAGAGTTGAGATGAAATTGCGTGCTTTATCTGATCGGATGGATGCTGA
CAGAACTACGGCCTCTAGTAGATCATCCTCTTACCAACCTCCTGAGAGAGCTATGACCTC
AGCTAGATCTGCATATCAAGATAGACTAGCAATATCTTCTAGATCCAGTGTGTCTCAGAA
CACTAGTAAAGCCTTGGCACCTTCTAAATTAGCTGCTCAAGCTTCCCATAAATTTCTTAA
AGGTGTGCAGCGTTTAGATGCCATGCCCCGTGGTATTTTCGTTAATAAAGGATCAAGTGC
TTCTCTTGTTGCTTCTTGCAACAGTAGTGCAACTGGGAAGTTGTCTGCCAAGATTTTGGT
GGCACCCAGTTCGTCTCAAGTTGGTGCAAAGACTTCCAGGACTGCTCAGGTTACACCGAA
AAGAGCAGCAGGACCTACCAGTGTAAACAATGTGTCACACAATAAAAGAAGCAGCTCCGA
GAATCTCCCTCGTGCTGCAAAGGCGCCTAAGATATCAAAAGTGATGAATGCGGTGTCCAA
GGCTGAAGCTGTGCAGAAGTCAAAATCATCAAGCAATCTTGTTGGAGGAAGAAATTTATC
GACAAAGCGCTCCGCAAACTGCAATGAAGAAAACAGAAAGGCGATCCCGTCGCGCAAGGT
AAACATGGCTGAATGCACGAGGAGCAATCTGAAAGGTGGCCCATCACTGACTAAGAACAA
GCCACGTCGCAAGAGAATATCTGGATGTGCAAGGCAGTATCGTGCCGCTGCTGTGCTGTC
GTTACGGCCCGTGACATTTCTGGCCGTCGCGTTTGTTGCTGCTTTGCGAAGGGGATACAC
CGGAACCATTTGA