Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d016836_T007
CDS Infomation	cds chromosome:B73_RefGen_v4:5:177823409:177828504:-1 gene:Zm00001d016836 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rough endosperm3 description: rough endosperm3
Sequence	ATGAATGGACGCTATTTTGCTGGAAAACAGATAACATGTGAATTTGTTGCTGTGACAAGA TGGAAGGCGGCCATATGCGGTGAGTACATGAGGTCAAGATACAAGACATGTTCACATGGA GTTGCTTGTAATTTTATTCACTGCTTCCGCAATCCTGGAGGAGATTATGAGTGGGCTGAT TGGGACAATCATCCTCCTAGATACTGGATTAGGAAGATGGTTGCTCTTTTTGGTCCCTCA GTTGATGAGATGAATGAAAAGGCGAGTCATACCCCAGATTTTAGAAGTTCAGTGGGCTCT GATAGGAAGAAACTTAAAATTTCCAGCAACAGATATGTTTCAAGAGGATCTAGGAACGAA GATGTGCATACACGACACTCTCCTCAAGATTATTCACATTCTAAGCAAGAACGAAGTAGC CACAACATGAATTATGAGTACAGACGACATAAAAGAGATTCTTCAGCAGCAGATAAGCAC CGAAGACAAGATGTTGGAGATACAAATGACAGACAATTTTCAACAATGGGAAATGACAGC AAGTCCCATAGGCATAAGCATGAAGAACGGCATAGAAGTGATCATGGTAATGGAGAAAAA GAAGATGACAGCAAAACTAGGCCTAGGAAGCACTGTTCTGTTAGGCGTGGAAGTTTGGAG GTTGGATATTCTGACTGGTCTCCAGACTTCACTGGTACAGACAACAGCAAGGGTCCTTCA GGTGAGAAGTCCACTAGCAGGTATGATGATGCCAAAGGGAGCAGGAGGGGATCATCAGAG TATTACAATCTTGAAAGACACCACTCTACAGCTCAAAAACAATCAAGAAATGAGCACAGC ACTACAAGACGCAGGAGACATGACATTGAAGATTATCATGATGAAAAAAATGACGGAAGA GGGGAATCCCGAAAGCATAACCGCCATGAATCAAACGACCGGTGGGTAGCCACAAATAGT GATGTTGATTCGGATGTAGATAGATATCAGAGTTCAAGCTGTAAAGGCACTAGGTTGGGA AGGAAGGATGATGATCCAGGCATTGAAGTTCGGCATCAGAGGTCAGGTAGAAGTACGAAG GATGACAAGAGAAGGAAACATCACAGTGGAAACAGGTGGCACAGCGGCACTGAAGAGGGT ACCTCAGATTCAAGCGGTGGAGATTTGAGCTCTGATTCGTGGAGTGGTAGATCGAGAAAC AGTGAGAACTTTTCAGCACACAGGTCAAAGAGGAAGCGAAGTCGGAGCAAGGAGTCTGGT TATTAG

Peptide Sequence

PEP ID	Zm00001d016836_P007
PEP Infomation	pep chromosome:B73_RefGen_v4:5:177823409:177828504:-1 gene:Zm00001d016836 transcript:Zm00001d016836_T007 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rough endosperm3 description: rough endosperm3
Sequence	MNGRYFAGKQITCEFVAVTRWKAAICGEYMRSRYKTCSHGVACNFIHCFRNPGGDYEWAD WDNHPPRYWIRKMVALFGPSVDEMNEKASHTPDFRSSVGSDRKKLKISSNRYVSRGSRNE DVHTRHSPQDYSHSKQERSSHNMNYEYRRHKRDSSAADKHRRQDVGDTNDRQFSTMGNDS KSHRHKHEERHRSDHGNGEKEDDSKTRPRKHCSVRRGSLEVGYSDWSPDFTGTDNSKGPS GEKSTSRYDDAKGSRRGSSEYYNLERHHSTAQKQSRNEHSTTRRRRHDIEDYHDEKNDGR GESRKHNRHESNDRWVATNSDVDSDVDRYQSSSCKGTRLGRKDDDPGIEVRHQRSGRSTK DDKRRKHHSGNRWHSGTEEGTSDSSGGDLSSDSWSGRSRNSENFSAHRSKRKRSRSKESG Y

Transcript Sequence

Transcript ID	Zm00001d016836_T007
Transcript Infomation	cdna chromosome:B73_RefGen_v4:5:177823409:177828504:-1 gene:Zm00001d016836 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rough endosperm3 description: rough endosperm3
Sequence	GGTCCAGCAGAAATTATATGGAAAGGAAATGAGATCATTGTGAAGAAGAAAAAGGTTAAA GTACCAAAGGGGTCCAAGGAAAAGCTGCAAATTCAGGAGGAAGATAGACCTACATCAAAT CCGCTCCCACCACAGTCTGTTGCTTTGGCTGCTCATAGGAGAGAACCTTCTTTGTCTGCT CAAGAAGTACTTGACAAAGTTGCTCAAGAGACTCCGAATTTTGGAACAGAACAGGATAAG GCCCATTGTCCATTTCATCTCAAGACAGGGGCTTGTCGCTTTGGATTGCGCTGCAGCAGA GTTCACTTTTACCCTGATAAATCAATCACATTGCTAATGAAAAACATGTATAACGGTCCA GGCCTTGCTTTGGAGCAAGATGAAGGGCTTGAGGTTTGTTAGAGGAAATTCTCTAATGCA TAACTTTGTATCCTTAAACTACTGTTTATTTACGTTTAAGGATGCTCAATTTTGGTTTCA TGGGCAGTGCCATTTTAAGTTGTGATAGTTTAATACTAAAGCAAGCTCATGTCAAAATAA CAAGTATTCCACTTTAAGCTTGTAAGCCTTTATAAGAAGACATGAGTATAAATAACTGAC TACTTGGAACTATTTGAATTTTTTTAATCTACTGCTCAAGATAACTCTTACCCCAAGTTT TCCTTGGCTACTATCAGACTCGCGACAGATTGCATGTTCTTTCGTGTTATCTTCAGAACT TCGACTTGAGGCATACAGTGATCAGACCAGTTGATTTCACTTGATTGAGGACGTCTTGAA CTTTGATCTGCTAATGTATCCTAAATTATCATGGTCTTGCTGATGTTGCTGAGCTTTTTG ATGTTTTCTATTGCTATTAGAAATGTGCCCAATATTTGAAATCGGTACATGTATTGGGTA TCATTTATCAAGTAGATCCTTGACAATTTTGATAATATTCGGGAAATTTTAAATGTTGAA CCGTTGAGGAGTATTTCTTTTATTGGACGTCTTTGGTGACCATTAGGGTGACAGTTCACA GATGAAGAGATTGAACAAAGCTATGAAGAATTTTATGAAGATGTACATACAGAATTTCTG AAATTTGGTGAACTTGTGAATTTCAAGGTATGTAGAAATGGGTCTTTCCATCTTCGAGGG AATGTTTATGTGCACTATAAATCGTTGGATTCAGCTCTTCTTGCCTACAGCAGCATGAAT GGACGCTATTTTGCTGGAAAACAGATAACATGTGAATTTGTTGCTGTGACAAGATGGAAG GCGGCCATATGCGGTGAGTACATGAGGTCAAGATACAAGACATGTTCACATGGAGTTGCT TGTAATTTTATTCACTGCTTCCGCAATCCTGGAGGAGATTATGAGTGGGCTGATTGGGAC AATCATCCTCCTAGATACTGGATTAGGAAGATGGTTGCTCTTTTTGGTCCCTCAGTTGAT GAGATGAATGAAAAGGCGAGTCATACCCCAGATTTTAGAAGTTCAGTGGGCTCTGATAGG AAGAAACTTAAAATTTCCAGCAACAGATATGTTTCAAGAGGATCTAGGAACGAAGATGTG CATACACGACACTCTCCTCAAGATTATTCACATTCTAAGCAAGAACGAAGTAGCCACAAC ATGAATTATGAGTACAGACGACATAAAAGAGATTCTTCAGCAGCAGATAAGCACCGAAGA CAAGATGTTGGAGATACAAATGACAGACAATTTTCAACAATGGGAAATGACAGCAAGTCC CATAGGCATAAGCATGAAGAACGGCATAGAAGTGATCATGGTAATGGAGAAAAAGAAGAT GACAGCAAAACTAGGCCTAGGAAGCACTGTTCTGTTAGGCGTGGAAGTTTGGAGGTTGGA TATTCTGACTGGTCTCCAGACTTCACTGGTACAGACAACAGCAAGGGTCCTTCAGGTGAG AAGTCCACTAGCAGGTATGATGATGCCAAAGGGAGCAGGAGGGGATCATCAGAGTATTAC AATCTTGAAAGACACCACTCTACAGCTCAAAAACAATCAAGAAATGAGCACAGCACTACA AGACGCAGGAGACATGACATTGAAGATTATCATGATGAAAAAAATGACGGAAGAGGGGAA TCCCGAAAGCATAACCGCCATGAATCAAACGACCGGTGGGTAGCCACAAATAGTGATGTT GATTCGGATGTAGATAGATATCAGAGTTCAAGCTGTAAAGGCACTAGGTTGGGAAGGAAG GATGATGATCCAGGCATTGAAGTTCGGCATCAGAGGTCAGGTAGAAGTACGAAGGATGAC AAGAGAAGGAAACATCACAGTGGAAACAGGTGGCACAGCGGCACTGAAGAGGGTACCTCA GATTCAAGCGGTGGAGATTTGAGCTCTGATTCGTGGAGTGGTAGATCGAGAAACAGTGAG AACTTTTCAGCACACAGGTCAAAGAGGAAGCGAAGTCGGAGCAAGGAGTCTGGTTATTAG TTGTAAATAGTTAGCCTCTTTTTGGAGCACATGAATTCGTAGGAATCGTGCAGAAATTTT ACAGGAATCGGTTTAACTTCGC