Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d016835_T015
CDS Infomation

cds chromosome:B73_RefGen_v4:5:177817102:177822604:1 gene:Zm00001d016835 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ligatin

Sequence

ATGGAAACATGTTCTTCTCCACAGGCAAATCACATACTACCGAACAGACCTCCTGGTGTT
ACTATTGATATAAAAAAGTCATCACACAAAAAGTTGTCGAAGTGGTTACAATCAAAATCT
TCATCTGGCCTTATTTCAGCAAAGGAGGACAAATATAAGAAGGAAGTTGTATTGCTTGCT
ATCAATCACAAGCATCCAGACTACATGGCCTTTAGACCGGAAAAGAGGGTACAGGAGCTT
GTTGAACACGAAAAGGATGTTGCTGAAAGTAGTGTCACTAAGCAATTGGAGGTTGCAGAG
ATTTATAAGCCAAGTTCTCATGTTAAACCCATATTTGTGGCTGTCGAAGCTGACATGGAG
AAGTATTACAGTGCACCAGAGGCTTCAGATATAGTCTTCAGGTACGTCGAAAAGGAAAAA
TTGGTTAAACCTACAGACAGGGCCAAGGTGATTCTTGATGTTACATTATGTGATGCATTG
TACAAAGGGGCTATCAAAAAGGGCTCGGCATACCCAACTGAAATCCACAAGAAAGACTTA
GGTTCAGCATTCTTAAACCGCATGCAAGTTCACCACAAGGTATCGAGAGGAACTCAGGAG
GTCATACGCAAGGGTGCCATAAGAACTATCCAGATCATGACAGAAAGAAGACAGGGCAAC
AAGAAGATGACTCGGCTTTCTGGGCTCGAGTGTTTCCTGATGGATCCTGATTCATTGGCT
TCTGAGCTCCAGAAAAAATTTGCTTGCAGCACCACCACAGCAGAGCTTCCAGGTAAGAAA
GGGCAGTACGAGGTCTTGGTACAAGGTGGAGTGATTGATGACCTTGCTAAACACCTTGTC
GACCATTACGATGTTCCTAAAAGATACATCGAGGTTTATGACAAAACAAAGAGGTAG

Peptide Sequence

PEP ID

Zm00001d016835_P015
PEP Infomation

pep chromosome:B73_RefGen_v4:5:177817102:177822604:1 gene:Zm00001d016835 transcript:Zm00001d016835_T015 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ligatin

Sequence

METCSSPQANHILPNRPPGVTIDIKKSSHKKLSKWLQSKSSSGLISAKEDKYKKEVVLLA
INHKHPDYMAFRPEKRVQELVEHEKDVAESSVTKQLEVAEIYKPSSHVKPIFVAVEADME
KYYSAPEASDIVFRYVEKEKLVKPTDRAKVILDVTLCDALYKGAIKKGSAYPTEIHKKDL
GSAFLNRMQVHHKVSRGTQEVIRKGAIRTIQIMTERRQGNKKMTRLSGLECFLMDPDSLA
SELQKKFACSTTTAELPGKKGQYEVLVQGGVIDDLAKHLVDHYDVPKRYIEVYDKTKR

Transcript Sequence

Transcript ID

Zm00001d016835_T015
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:177817102:177822604:1 gene:Zm00001d016835 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ligatin

Sequence

GGACTAAAGAATTTGTTGTTGATGTTAGTGTAATATGGGACAATAACATGTAAAGTTACG
CTAATGGAATTACATGCTTTTGATCCCTTGCTCACCCTCACCTCGTCTAACAGAGTAAGA
AGTTAGTGGACGGTGTTTGGTTCTTTCACGTTGTCACCAGCTACCTTCTTATTTATGAAA
ACGAGGAATTTTCTTGCTCGCTCTAAAGAGCTGATTTGAGTCACCACCTTCCTCAGCAAG
GCGAGGGCGAGTGGCAGGGGAAAGGCAATCAAGCTACCCCTACAGATCATCATTATATGA
CTCCCTCAGTTCCTTTTTGTTAGCCTTTTTAGCTTAAGCGCACATATTGAGGAGATTCAA
ATTTAAGGGGTTGGCAAACAAGAAAAGGCTGCATTAGCCCTAATCTTCCACCGCTCTGTC
ACTTTGTGCATTCATGGAGAAAATAAACCAGTTTTATGCTATCCATTTATTGGCTGAAGC
CTTTTGAATTCCCCATCCTCTTTCTCATGGTGGGTATAGGAAGTGGAGATACAAGCTGTT
GGTGACGAGGCAATGAATTGGCAGGCATGCATCATTACACGGGCACTAAAGAAGCAAGGG
TAAAATAGGAAGAAAGTGGTTAAAGATTCCCTTGAAACCATACATGCCTATAAAATGAAG
AAAAAACTTTCTAATCATAATACGCCTTACATAAAGAAATAAAGGAGTACATGTTAGTGT
TTTGGTTGTCACCATCAGCTTGGCACATACATTGTGCAATAGAACTCTTGGCTTAGTGAA
GGAATAGTAGCCTACTTGTTCATGTGTGCTTGTGAAATTTCGACCCGTAACATTTATTTT
TTTCTTTATCATATTCCTTCTTATTCCTATATTTATCAGTTGTACTGTGAAAGGAAGGAC
AGGCTTGGTGCAGTGGCGAGAATTGTCTCACCAGATCGCGGGTTCGAAGCAGCCTCTCCG
CATTTGCAGGAGAAGGCTTGCCTCGATAAGGTTTTAAAGTCGGCTAGTCGACTCTAGTCG
CCTGACCACCGATAAGGTGACTAATCGCGATTAGTCGAGCCTAGTCGACTCCTAGTCGGG
GTTGAACATAGGAGGGCAGGCGCGCGCTGGAGGGGGGCCTCTGCAGACTGCAGCTGCCAC
TCAATGGAGGGGGCGCAGCTGACGCTCGAGCAGAGGGCCGCCAGAGCATAGCAGGGCGGT
GGTGATGGAGAAGGGGCGGCGACGCTGGAGAAGGGCGCATACGCGAGCGCGACTATGCGA
TGCGTAATGGGTGTACCGTATTGGTACAAGTAGGGAAAAACATTGTTTATGCTATACAGA
TGGTGGGTCAGCCCATGTAACAGAGACCAGATTAGTGGCCCAAAACAGGCATAACTAGTC
GACCATTATACCTAGTCAGACGACTAATCGTGATTAGTCGGCGACTAGGACGACTAATCG
CTTCCTAATCGCTCTACTCGAGTCGGAGACCCTAATCGAGCTCCCTCTAGCGATAAGGCC
GACTAATCGTGACTAATTGTGATTAGTCGGACTACTTTAAAACCTTGTGCCTCGGTTTAT
CCCTTCCCCACCCCACTCATGTGGAAGCCTCCGACACTGGGTCTGCCCCCTTTTTACCAT
GGAAGGAACTTATAGGAATTTTACACATAATTCTGTATCATTTGTATATTTATTTATATG
TTTGAACTTGTTATTTTTTCTCGAAGCACGCCGGAGAGCTGTATGTCATTTCATTAAGAA
GAAAAAGAAGTCTTCCCCGAAAAGATGATACACCCCGGGAGGGGGTGTGCATTACAACTC
ACACTCACACTTAAAAAACTAACAGCCCCAGAGACGACCATAGGAGGCACAGCTTTGAAT
TTGTTGTAATACTTGCTTTGATGTTTGTATAGGCTGAGATAACAGTTGCTAAGTACCCGA
ACCATGTTCTTGTATATGGCATAGAGGGAGAGTTCCCAATGATTTTCAACACTGACGCAA
GAGGTCATGAACTGTTTCCTACAGGTTTCTCTTTTCATCTCCTCCATATTCGCATTTCTC
TTATCATCTATTAAATCCAACTTTTGTTACTTGTGCTACAGTACTTTTGTTATTGTACTA
CTGCTTTTGAGATTTATTTGTTTCTAGTTGAGTATGCACATAAAAGAAAGGGAGCAGAGA
ACAAACAGAAGCCTCTGCTTCCTGTTATTGAGTACAGTCATCATTATTTTGATTTCTTAT
TATCAAATCAGGTGCTTGATTTACTGTAATTTTGTTATCATCTACTCTTATTTTGTATGT
ATAACTTACTGGTTTTGTTTCTTATATTAAAAATAAGTTAACTACTTAAACCTAGCTTAG
CTGATGATAACCACAATGAATTATCGAAGATACTGTCCATAATAGTATAAAAGGAATCAC
TTCCATTACGCATCGCATGAGTTTATAGAGCTAAGATTTTATCTACAAAGTCCTTGCATT
TTGACTGTTTTATAGGTTTTCACTTACTAATCAACAGTTGTTGGGCATTGGAAATGAATT
GGGTATGGTTTCTCTGCTGCAAATATTGCAGTTTATGCGCTTTGGAAGGTCCCCCATCTG
TTGCCAGCTTTTACGCTTAAAGGTGGTGAGGTTTCACGTTTCGTGATTGGTGGCGCTGAT
CTGATGTTTCCTGGTATCAGCATACCTCCAGAAGGGTTTCCATCTTTTGAAGCTGGCCAA
CCATGGGCAGTAAAAGTTCCTGGTAACCCTGCTGCAATTGCGGTTGGGAGCACAACTATG
AGTAGTACTGAAGCTTTGAAGGCAGGACTACGTGGCAAGGCTTTAAAGATTTTACATTAC
TACAGGGATATGTTATGGGATTCGGCTGATGGTTGTTATGTCCCTAATGAAGGATTTTTT
GATGACATTGTTGTTGAAGATCCTAATCCTGTTTCAACATCTCAGGCTCCTGATTCTGCT
GAAGAACCTGAAGTCACGAATGATGGTAGTGTTTCGGCTGAAGATGCAGGAGTCGATATT
TCAGACAATCATGGTACAAATCCTGGCATCCAGATTGAAGCAGTGGAAGAGATAACTGAT
GTTGTTAACGAACTAAAACTTCCCGAAGATAAAACTACTGAACAAGCACCTGTTGAAATG
GAACATCATAATTTGAGAACTGAGGAAATTGATTCTCTCTTGGACAAATGCCTTCTGCAA
GCGCTATACACAAGCATAAAAGAAAAAGATCTTCCAATGCCAGGAAGTACACTATGGTAG
ATTTTCTGCTTTAACCCATTTTTTTCACATTTGTGTTTATTCTATTTATTTCTATATAAG
TTATTGCAATCAAGCAGCTGGCGCTTATATATCTAACTTCCATTGGGTTCATCTGTTTTT
CTCCAGGACATATTTTAGGCTTTCGATTACGTACATGGAAACATGTTCTTCTCCACAGGC
AAATCACATACTACCGAACAGACCTCCTGGTGTTACTATTGATATAAAAAAGTCATCACA
CAAAAAGTTGTCGAAGTGGTTACAATCAAAATCTTCATCTGGCCTTATTTCAGCAAAGGA
GGACAAATATAAGAAGGAAGTTGTATTGCTTGCTATCAATCACAAGCATCCAGACTACAT
GGCCTTTAGACCGGAAAAGAGGGTACAGGAGCTTGTTGAACACGAAAAGGATGTTGCTGA
AAGTAGTGTCACTAAGCAATTGGAGGTTGCAGAGATTTATAAGCCAAGTTCTCATGTTAA
ACCCATATTTGTGGCTGTCGAAGCTGACATGGAGAAGTATTACAGTGCACCAGAGGCTTC
AGATATAGTCTTCAGGTACGTCGAAAAGGAAAAATTGGTTAAACCTACAGACAGGGCCAA
GGTGATTCTTGATGTTACATTATGTGATGCATTGTACAAAGGGGCTATCAAAAAGGGCTC
GGCATACCCAACTGAAATCCACAAGAAAGACTTAGGTTCAGCATTCTTAAACCGCATGCA
AGTTCACCACAAGGTATCGAGAGGAACTCAGGAGGTCATACGCAAGGGTGCCATAAGAAC
TATCCAGATCATGACAGAAAGAAGACAGGGCAACAAGAAGATGACTCGGCTTTCTGGGCT
CGAGTGTTTCCTGATGGATCCTGATTCATTGGCTTCTGAGCTCCAGAAAAAATTTGCTTG
CAGCACCACCACAGCAGAGCTTCCAGGTAAGAAAGGGCAGTACGAGGTCTTGGTACAAGG
TGGAGTGATTGATGACCTTGCTAAACACCTTGTCGACCATTACGATGTTCCTAAAAGATA
CATCGAGGTTTATGACAAAACAAAGAGGTAGGAAGTGGGGGCTGATCATGTCCGTTTAGG
TGTTGGAGCGCTTGGATGGTCTACGAAATGATCCCAGGATTGTTTCATGATACTTTTTGT
CATCACATGTCTGAGCAATATTACGACATTGTTGATCTACGAGTACCTTACGATATTTGT
TTTCGTTCCTGCCTTTGGTTGATGGAAAATGCTATTGTGCTTACTGAAGAAATATGGTTA
CAGGATGGATAATGAGGTTTCC