Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d016825_T018
CDS Infomation

cds chromosome:B73_RefGen_v4:5:177531607:177537721:-1 gene:Zm00001d016825 gene_biotype:protein_coding transcript_biotype:protein_coding description:SPla/RYanodine receptor (SPRY) domain-containing protein
Sequence

ATGGTGACGAACCAGGACGCGGATGCGGCAGCGCCAGGGGCAGGGGCAACGGTAGATCCG
ATGCGGCTAGCATCGCGGTGGCGATCCCGGCCAGAGTGGAACTGCGCGTCGGCGGAGCTG
GAGGCTGAGCCGTCCGAGCTCAACACCGTCAACAGCTCGGGACTCTTCTCCGTCGTCTCT
ACCGACAAGTTATCGGTAAAATACCTCGGCAGCCATCACCACGGCCACGACGTCGGTGTC
GTGCAGGCCGACCGTCCCGCGCCGACGCGCCGAGCCGTGTACTACTTCGAGATGGGCGTC
AGGAATGCTGGATACAAGGGGCAGACATCCATTGGGTTCACGAGCGAGAGCTTCAAGATG
AGGCGACAACCGGGCTGGGAGACAAACAGTTGTGGATACCATGGTGACGACGGCCATCTT
TATCGGGGTCAAGGGAAAGGTGAATCATTTGGGCCAAAATTCACATCTGGTGACATAATT
GGTGCTGGCATCAACTACTTGTCACAAGAATTTTTCTTCACGAAAAATGGTACTCTGGTT
GGAGCCATTCCAAAAGAAATTAAAGGCCCACTATATCCTACCATTGCAGTTCATAGTTAC
GGTGAAGAGTTGACTGTAAACTTTGGAAAAGAACCATTCTGTTTTGACGTTGAGGGTTAT
ATTCTTGAGGACAAAATGAGGCAGCAATCAGTGTCTGATAAATTGAACTTGGAGCCAGAC
ATCAGCCATTGGATTGTCCGTTCATATCTCCTACATTATGGATACCAAGATACATTAAAT
GCTTTTGATATGGCAAATGCAACCGATCGCCCCACCAGTCGCCAAAATGGTAATGCAGAA
CCTCCCGAAATGTATGGTCTTAGCCATAGAAAACTTTTGCGTCAGCTTATCATGAGTGGA
GATATTGACTCTACATTCAAAAGACTTCGGGAGTGGTATCCGCAAGTGATAAAGGATGAG
CAATCGGTTATTTGCTTCCTACTTCGTTCTCAAAGATTCATAGAATATATCAGGGCTGAA
CAACTGGAGGTTGCCGTGAAATATGGTCGTGCTAACCTGGCAAGCTTCTTCACCCACAAA
GCTTTTGAGGGGCTGCTGAAAGATAGTGTGGCCCTACTTGCGTATGAGAAGCCTACAGAA
TCATGCTTGGGATACCTGATGGACTCTTCCCAGCGTGAATTTGTGGCGGACGCGGTGAAC
GCGGCTGTCCTGTCGACGAACCCCACTGTGAAGGACCCTGAGAGCTGCCTTTACTCGTGT
CTCGAGAGGCTACTAAAGCAGCTCACAGTATGTAGCTTTGAGCGACGTGCATTCAACAAC
TACCAAGGAGATGCATTCTTACTCCACAAAGAAGTGCAGAATTATGAAAGGTCTAGGCGC
TCATAG

Peptide Sequence

PEP ID

Zm00001d016825_P018
PEP Infomation

pep chromosome:B73_RefGen_v4:5:177531607:177537721:-1 gene:Zm00001d016825 transcript:Zm00001d016825_T018 gene_biotype:protein_coding transcript_biotype:protein_coding description:SPla/RYanodine receptor (SPRY) domain-containing protein
Sequence

MVTNQDADAAAPGAGATVDPMRLASRWRSRPEWNCASAELEAEPSELNTVNSSGLFSVVS
TDKLSVKYLGSHHHGHDVGVVQADRPAPTRRAVYYFEMGVRNAGYKGQTSIGFTSESFKM
RRQPGWETNSCGYHGDDGHLYRGQGKGESFGPKFTSGDIIGAGINYLSQEFFFTKNGTLV
GAIPKEIKGPLYPTIAVHSYGEELTVNFGKEPFCFDVEGYILEDKMRQQSVSDKLNLEPD
ISHWIVRSYLLHYGYQDTLNAFDMANATDRPTSRQNGNAEPPEMYGLSHRKLLRQLIMSG
DIDSTFKRLREWYPQVIKDEQSVICFLLRSQRFIEYIRAEQLEVAVKYGRANLASFFTHK
AFEGLLKDSVALLAYEKPTESCLGYLMDSSQREFVADAVNAAVLSTNPTVKDPESCLYSC
LERLLKQLTVCSFERRAFNNYQGDAFLLHKEVQNYERSRRS

Transcript Sequence

Transcript ID

Zm00001d016825_T018
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:177531607:177537721:-1 gene:Zm00001d016825 gene_biotype:protein_coding transcript_biotype:protein_coding description:SPla/RYanodine receptor (SPRY) domain-containing protein
Sequence

TCCTGCACTGACCTTTTCCTCCACGTTTCCGGCAACTGCAAGCAACCACTGATCCAGCCC
GTTCTGTGTCCCGGCGAATGGTGACGAACCAGGACGCGGATGCGGCAGCGCCAGGGGCAG
GGGCAACGGTAGATCCGATGCGGCTAGCATCGCGGTGGCGATCCCGGCCAGAGTGGAACT
GCGCGTCGGCGGAGCTGGAGGCTGAGCCGTCCGAGCTCAACACCGTCAACAGCTCGGGAC
TCTTCTCCGTCGTCTCTACCGACAAGTTATCGGTAAAATACCTCGGCAGCCATCACCACG
GCCACGACGTCGGTGTCGTGCAGGCCGACCGTCCCGCGCCGACGCGCCGAGCCGTGTACT
ACTTCGAGATGGGCGTCAGGAATGCTGGATACAAGGGGCAGACATCCATTGGGTTCACGA
GCGAGAGCTTCAAGATGAGGCGACAACCGGGCTGGGAGACAAACAGTTGTGGATACCATG
GTGACGACGGCCATCTTTATCGGGGTCAAGGGAAAGGTGAATCATTTGGGCCAAAATTCA
CATCTGGTGACATAATTGGTGCTGGCATCAACTACTTGTCACAAGAATTTTTCTTCACGA
AAAATGGTACTCTGGTTGGAGCCATTCCAAAAGAAATTAAAGGCCCACTATATCCTACCA
TTGCAGTTCATAGTTACGGTGAAGAGTTGACTGTAAACTTTGGAAAAGAACCATTCTGTT
TTGACGTTGAGGGTTATATTCTTGAGGACAAAATGAGGCAGCAATCAGTGTCTGATAAAT
TGAACTTGGAGCCAGACATCAGCCATTGGATTGTCCGTTCATATCTCCTACATTATGGAT
ACCAAGATACATTAAATGCTTTTGATATGGCAAATGCAACCGATCGCCCCACCAGTCGCC
AAAATGGTAATGCAGAACCTCCCGAAATGTATGGTCTTAGCCATAGAAAACTTTTGCGTC
AGCTTATCATGAGTGGAGATATTGACTCTACATTCAAAAGACTTCGGGAGTGGTATCCGC
AAGTGATAAAGGATGAGCAATCGGTTATTTGCTTCCTACTTCGTTCTCAAAGATTCATAG
AATATATCAGGGCTGAACAACTGGAGGTTGCCGTGAAATATGGTCGTGCTAACCTGGCAA
GCTTCTTCACCCACAAAGCTTTTGAGGGGCTGCTGAAAGATAGTGTGGCCCTACTTGCGT
ATGAGAAGCCTACAGAATCATGCTTGGGATACCTGATGGACTCTTCCCAGCGTGAATTTG
TGGCGGACGCGGTGAACGCGGCTGTCCTGTCGACGAACCCCACTGTGAAGGACCCTGAGA
GCTGCCTTTACTCGTGTCTCGAGAGGCTACTAAAGCAGCTCACAGTATGTAGCTTTGAGC
GACGTGCATTCAACAACTACCAAGGAGATGCATTCTTACTCCACAAAGAAGTGCAGAATT
ATGAAAGGTCTAGGCGCTCATAGGCATCGGGTTTGATGCGCATCTCAGAAGTAAACTCAG
ATGCTAGACTCCCAAGTCTCAACTGCTCTTTGAAGTGGTCGACCATGCTAAGCACAAATC
CTTCCCCTTGATGCAGCACCCCTACTTTCGGAAGGGTGGATACAAGATTTCACAGACAGA
GGTCAGGCTTTCGGAAGGTGTCTTATCCTCCCTGTAATCAGAAAACTACGTTTCAGTCTC
CCTAGTTTTTTTTGTTGGTTGGCTAATATGCTGTTTGACATTGACATTGTGGATGCTAAA
AAGTAAAGATGCTT