Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d016815_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:5:177051872:177054312:-1 gene:Zm00001d016815 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein
Sequence	ATGCGCCGCCTTCTCCCGCCGCTCGCTGTCCACCCGCCGCCATGCCTCCCAGCACCTCCT CCAACCGCCGGCGGCGGAAGCGCCCTCGCCATCCCGGAGTTGATTCCTCTCCTGGAACGG GCCATCTCAATGGGGGACGTGCTCCATCTCGGCCGCGCGGTGCACGCGCACCTCGTCAAG ACGGCGCTCACCAGCCATACGCTCCTATCAAATCGTCTCGTCGCGCTCTACTCCTCGCTC CCGTCGCCGGCCGCTGCCGTCAAGGCCTTCTACGACCTTCCACACAAGAACGCGCACTCC TACAACACGCTTCTCGCTGCGCTCTTGCGCAGGCCGGACACCCTCCCCGACGCCTTCCGC CTGTTCGACACAATGCCGGCCGACTCACGCAACCTCGTCTCCTACAACACCCTCATGTCG TCCCTTGCGCACCACGGCCGGCAGGTGGAGGCGCTCCGCGTCGTTGCCCGGCTGGCCAGG GACAGGTTCTTGGGGCCAGGTTTAGCCATGGATCGGTTCACGGTGGTCAGCGTGGCGACT GCATGTGCGGGAATCGGAGCTGCGAGGCCGCTGCGGGAAATGCACGGTGCGGTAGTGGTA TCAGGGATGGAGTTCACCGTCATCATGGCCAATGCCATGTTGAACGCCTACAGCAAGGCT CGGAGGGTGGAAGATGCGAGGCATTTGTTCGATCAGGTCAGCATCCGAGACAATGTCACT TGGACGTCGATGATTTCTGGGTACTGCCAAGTGAAGAAGCTCCATGAGGCAGTGCAGGTG TTCGATATGATGCCAGATAAGGATAGGATTGCATGGACAGCGCTGATATCTGGGCATGAG CAGAATGGAGAGGAGGACACCGCTCTTGAGCTTTTCGAACAGATGCTGGCCAAGGGAGTA TCACCAACGCCTTTTGTCTTGGTGTCAGCTTTGGGTGCATGTGCCAAACTTGGACTTGTC ACACGTGGGAAGGAATTGCACTGCTTCATCTTACGCCGGAACATTGGCTCTGTCCCTTTC AACATTTTCATCCACAATGCACTCGTTGACATGTACTCTAAGTGTGGAGACATGATGGCT GCGATGGCAGTATTTGACTGGATGCCTGAGAGGGACTTTATCTCTTGGAACTCAATGGTC ACGGGGTTCTCACATAATGGCCTCGGAAAGCAGTCACTTGCTATTTTTGAGGAGATGCTG GTAGCTGGAGTTCGTCCAACTCATGTCACTTTCCTCGCTGTCCTCACGGCCTGCAGCCAT TCTGGTCTAGTATCTAATGGACGACTCGTTCTTGAATCAATGGAGGACCATGGTGTTGAA CCAAGGGCTGAACACTATGCTGCCTTCATTGATGCTCTTGGTCGGAATCACCAGCTGGAA GAAGCGACTGAGTTCATCAAAGATTTGCCATCCAGGATTGGTCCTGGTACAGCTGGATCC TGGGGAGCTCTCCTAGGTGCATGTCGCCTTCATGGAAATATCGAGCTTGCAGAAGAAGTG GCAGAGTTTCTCTTCAGGTTAGAGCCTGGGAACAGTGGTCGGTATGTCATGATGTCAAAC ATCTATGCAGCTGCAGGACAGTGGGATGATGCACGTCGAGTCAGGGGGCTCATGAAGGAG AAGGGCCTTAAGAAGGATCAGGCTTACAGTTGGATTGAGGTGCGGAGTGCAAAGCATGTA TTCGTTGCTGATGACATCTCTCATTGCGAGGCAGACAAGATATATGAGATGTTGGGGAAG CTTCTCGACCATATGAGCGTAGCAGAGGATCCTACTGAACACCAGCTTAATTTTTGTTTA GACTTGAGTGGAACTGCCCATGTATAA

Peptide Sequence

PEP ID	Zm00001d016815_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:5:177051872:177054312:-1 gene:Zm00001d016815 transcript:Zm00001d016815_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein
Sequence	MRRLLPPLAVHPPPCLPAPPPTAGGGSALAIPELIPLLERAISMGDVLHLGRAVHAHLVK TALTSHTLLSNRLVALYSSLPSPAAAVKAFYDLPHKNAHSYNTLLAALLRRPDTLPDAFR LFDTMPADSRNLVSYNTLMSSLAHHGRQVEALRVVARLARDRFLGPGLAMDRFTVVSVAT ACAGIGAARPLREMHGAVVVSGMEFTVIMANAMLNAYSKARRVEDARHLFDQVSIRDNVT WTSMISGYCQVKKLHEAVQVFDMMPDKDRIAWTALISGHEQNGEEDTALELFEQMLAKGV SPTPFVLVSALGACAKLGLVTRGKELHCFILRRNIGSVPFNIFIHNALVDMYSKCGDMMA AMAVFDWMPERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRPTHVTFLAVLTACSH SGLVSNGRLVLESMEDHGVEPRAEHYAAFIDALGRNHQLEEATEFIKDLPSRIGPGTAGS WGALLGACRLHGNIELAEEVAEFLFRLEPGNSGRYVMMSNIYAAAGQWDDARRVRGLMKE KGLKKDQAYSWIEVRSAKHVFVADDISHCEADKIYEMLGKLLDHMSVAEDPTEHQLNFCL DLSGTAHV

Transcript Sequence

Transcript ID	Zm00001d016815_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:5:177051872:177054312:-1 gene:Zm00001d016815 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein
Sequence	ATGCGCCGCCTTCTCCCGCCGCTCGCTGTCCACCCGCCGCCATGCCTCCCAGCACCTCCT CCAACCGCCGGCGGCGGAAGCGCCCTCGCCATCCCGGAGTTGATTCCTCTCCTGGAACGG GCCATCTCAATGGGGGACGTGCTCCATCTCGGCCGCGCGGTGCACGCGCACCTCGTCAAG ACGGCGCTCACCAGCCATACGCTCCTATCAAATCGTCTCGTCGCGCTCTACTCCTCGCTC CCGTCGCCGGCCGCTGCCGTCAAGGCCTTCTACGACCTTCCACACAAGAACGCGCACTCC TACAACACGCTTCTCGCTGCGCTCTTGCGCAGGCCGGACACCCTCCCCGACGCCTTCCGC CTGTTCGACACAATGCCGGCCGACTCACGCAACCTCGTCTCCTACAACACCCTCATGTCG TCCCTTGCGCACCACGGCCGGCAGGTGGAGGCGCTCCGCGTCGTTGCCCGGCTGGCCAGG GACAGGTTCTTGGGGCCAGGTTTAGCCATGGATCGGTTCACGGTGGTCAGCGTGGCGACT GCATGTGCGGGAATCGGAGCTGCGAGGCCGCTGCGGGAAATGCACGGTGCGGTAGTGGTA TCAGGGATGGAGTTCACCGTCATCATGGCCAATGCCATGTTGAACGCCTACAGCAAGGCT CGGAGGGTGGAAGATGCGAGGCATTTGTTCGATCAGGTCAGCATCCGAGACAATGTCACT TGGACGTCGATGATTTCTGGGTACTGCCAAGTGAAGAAGCTCCATGAGGCAGTGCAGGTG TTCGATATGATGCCAGATAAGGATAGGATTGCATGGACAGCGCTGATATCTGGGCATGAG CAGAATGGAGAGGAGGACACCGCTCTTGAGCTTTTCGAACAGATGCTGGCCAAGGGAGTA TCACCAACGCCTTTTGTCTTGGTGTCAGCTTTGGGTGCATGTGCCAAACTTGGACTTGTC ACACGTGGGAAGGAATTGCACTGCTTCATCTTACGCCGGAACATTGGCTCTGTCCCTTTC AACATTTTCATCCACAATGCACTCGTTGACATGTACTCTAAGTGTGGAGACATGATGGCT GCGATGGCAGTATTTGACTGGATGCCTGAGAGGGACTTTATCTCTTGGAACTCAATGGTC ACGGGGTTCTCACATAATGGCCTCGGAAAGCAGTCACTTGCTATTTTTGAGGAGATGCTG GTAGCTGGAGTTCGTCCAACTCATGTCACTTTCCTCGCTGTCCTCACGGCCTGCAGCCAT TCTGGTCTAGTATCTAATGGACGACTCGTTCTTGAATCAATGGAGGACCATGGTGTTGAA CCAAGGGCTGAACACTATGCTGCCTTCATTGATGCTCTTGGTCGGAATCACCAGCTGGAA GAAGCGACTGAGTTCATCAAAGATTTGCCATCCAGGATTGGTCCTGGTACAGCTGGATCC TGGGGAGCTCTCCTAGGTGCATGTCGCCTTCATGGAAATATCGAGCTTGCAGAAGAAGTG GCAGAGTTTCTCTTCAGGTTAGAGCCTGGGAACAGTGGTCGGTATGTCATGATGTCAAAC ATCTATGCAGCTGCAGGACAGTGGGATGATGCACGTCGAGTCAGGGGGCTCATGAAGGAG AAGGGCCTTAAGAAGGATCAGGCTTACAGTTGGATTGAGGTGCGGAGTGCAAAGCATGTA TTCGTTGCTGATGACATCTCTCATTGCGAGGCAGACAAGATATATGAGATGTTGGGGAAG CTTCTCGACCATATGAGCGTAGCAGAGGATCCTACTGAACACCAGCTTAATTTTTGTTTA GACTTGAGTGGAACTGCCCATGTATAAAAGCACTGCTATGGTGATGGTAGGCGAGGTTCG CTCCCTTGCCACCAGCATCCTCGTGGCACTCTGTTAAGCTTTGTGAGACTGCAAAATAGC TCGAGCCAAGGGCTTCTGTTCGTGCAGAGTTTTCAATCTCCAGTTTGAGAGCTCAAGTGC TCAACGAGGTTTACCCAGAGAATCATCTGCAGTTGATTCAACGTTCCAAGTCTTGGGTCA TGGTGTAATCTGTCAGGCTTCAATCACAGCAGAAGTTGCAAGAGTTTGATCCAATCCAGT TTGAGTTCCTTGAGTTCACAATCCAATATTCATGTGCCCTGTGCTGTCAGCTGATCTTTC CCTTTTCATAAAAAAAGATTGTTTCCTGAGAATGGAGTATCTTCGCTCAAAAAAGAAACA AATAATATGGCGAAGGCGAATGGTTACTTCACCTGAACACGAAGACTCAAAGCAGAG