Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d016702_T006
CDS Infomation

cds chromosome:B73_RefGen_v4:5:173117125:173127135:-1 gene:Zm00001d016702 gene_biotype:protein_coding transcript_biotype:protein_coding description:Iron-sulphur cluster biosynthesis family protein
Sequence

ATGGCCGCCGCCGCCGCCATCTCTCTATCCTTCCACTTTCGTTTCCGCCCGCCCTTTCCA
TCTCCACGTACCCCCACGCGCCACGCTCCCTTTTCCTTGTTCTCCCCTTCCCTTCTTGCC
CCCTGCCGCCTCCGCGTCGCTCCCGGCCGCCCCTCACCGTCCCCGTGGCGCCCCGACGTG
CGGGCGCGCGCTGGAAGCACCATCGGGGCGCCGCCTGCGCTTGTGCGCCCAGGCGGAGCC
GTGGAGACGGACCGCCTCCCCTCCGACGTGCGGGACCGGGCCATGGAGGCGGTCGACCAC
TTCGGCGGTCGCGTCACCATAGGAGACGTCGCTTCTCGCGCTGGGCTGCAGCTCGCGCAG
GCGGAGCGCGCGCTCCAAGCACTCGCCGCCGACACTGAAGGCTTCCTGGAGGTATCGGAG
GACGGGGAGGTGCTATACGTCTTCCCAAAGGACTACAGGGCAAAGCTGGCTGGCAAATCG
TTTAGGATGCGGGTCGAGCCTCTGGTTGACAAAGCCAAGCAAGTGGGTGCTTATCTGGTA
CGTGTTTCATTTGGCACTGCGCTCATTGCCTCAATTGTGCTGGTGTACACTACAATCATT
GCCATTCTCTCAAGCTCAAGTGATGAAGATGGTCGTGGGAGGCGGAGGAGATCTTATGGT
TCTACTATCATCATTCCGACGGATATGTTTTGGTACTTGGATGCAGATTATTATAGAAGA
CGTCGAGTAGAAAACGAAAATGGGATGAACTTTATTGAATCTGTATTTTCATTTGTGTTT
GGGGATGGTGATCCAAACGATGGGCTTGAAGAAAAGCGGTGGAAGATGATTGGACAGTAT
ATTTCATCAAATGGTGGAGTTGTTACAGCTGAAGAACTGGCACCATTTCTTGATGTGCCA
CCTCCATCAGAAGAGTCCAAGGACGATGAATCATTTGTTCTTCCAGTTCTTTTACGCTTT
CAGGGACATCCAGAAATTGATGAGCAGGGAAATATCCTGTATCGATTCCCATCGCTGCAA
CGTACTGCTTCATCAAAAAGTGGTAGGAGCAGGGAATATGTGGGTACCAAATGGTCTGCA
ATGTTTAGCGGAGTTGAAAAGTACTTAGAGGAGAAACCGTGGAAATTCAGTAAAGCGAAT
GCAACAGAGAAGGCGATGGTTGCTGGTTTGGGAGGACTCAATCTCTTTGGTGTCATCATT
CTTGGAAACTTGTTGAAGCAAATGACAGTGACACCTGGTGGACTAATCTCATTTGCCGCA
CAGTTATATCCTTTGCTTCAGATATACGCTGGCTCCTTTTTTGCAATACCTTTGTTTAGA
TGGTTTCTGCTACGCAAGACCAACAATGGCATTAAAAAGAGGAATAAGGCCAGAGAACAG
AGAGCTCAGGAGCTCGTGTCACCAGATTCTTCTCTAAGAAGAAAGTTGCTCAGTGCACGT
GATATGGCTGAACGGAAAGTAATCACGCCAGAGGAGATTGTCTATACTACTGAAAAGGAT
CTATTGGAGCAGGATTATGAAGTCAAGGAGTGGGAGAGGAGATTTAAGGAGCTCGAGTCA
GAGTGA

Peptide Sequence

PEP ID

Zm00001d016702_P006
PEP Infomation

pep chromosome:B73_RefGen_v4:5:173117125:173127135:-1 gene:Zm00001d016702 transcript:Zm00001d016702_T006 gene_biotype:protein_coding transcript_biotype:protein_coding description:Iron-sulphur cluster biosynthesis family protein
Sequence

MAAAAAISLSFHFRFRPPFPSPRTPTRHAPFSLFSPSLLAPCRLRVAPGRPSPSPWRPDV
RARAGSTIGAPPALVRPGGAVETDRLPSDVRDRAMEAVDHFGGRVTIGDVASRAGLQLAQ
AERALQALAADTEGFLEVSEDGEVLYVFPKDYRAKLAGKSFRMRVEPLVDKAKQVGAYLV
RVSFGTALIASIVLVYTTIIAILSSSSDEDGRGRRRRSYGSTIIIPTDMFWYLDADYYRR
RRVENENGMNFIESVFSFVFGDGDPNDGLEEKRWKMIGQYISSNGGVVTAEELAPFLDVP
PPSEESKDDESFVLPVLLRFQGHPEIDEQGNILYRFPSLQRTASSKSGRSREYVGTKWSA
MFSGVEKYLEEKPWKFSKANATEKAMVAGLGGLNLFGVIILGNLLKQMTVTPGGLISFAA
QLYPLLQIYAGSFFAIPLFRWFLLRKTNNGIKKRNKAREQRAQELVSPDSSLRRKLLSAR
DMAERKVITPEEIVYTTEKDLLEQDYEVKEWERRFKELESE

Transcript Sequence

Transcript ID

Zm00001d016702_T006
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:173117125:173127135:-1 gene:Zm00001d016702 gene_biotype:protein_coding transcript_biotype:protein_coding description:Iron-sulphur cluster biosynthesis family protein
Sequence

ACTGACCAAACGCCACCTTGAGGAAAGGGGGCGGGGAAGTTGCTGAATCTCACGTCCTCA
CCGTGCCGGACACCGGTGTCTGCTTGGACCAAATCCGATCTCGTGGCCACGGCCAGAACA
CACCTCCTCACGTCCACCTGACCTCTTGCTCCTCCCCAATAATGCCCAGTGCGGCAGTGC
CTGCCACCGTCTAAGCCCACCCCAAGTCTCCGCCGTCAACCCGTCCTCCCCCATGGCCGC
CGCCGCCGCCATCTCTCTATCCTTCCACTTTCGTTTCCGCCCGCCCTTTCCATCTCCACG
TACCCCCACGCGCCACGCTCCCTTTTCCTTGTTCTCCCCTTCCCTTCTTGCCCCCTGCCG
CCTCCGCGTCGCTCCCGGCCGCCCCTCACCGTCCCCGTGGCGCCCCGACGTGCGGGCGCG
CGCTGGAAGCACCATCGGGGCGCCGCCTGCGCTTGTGCGCCCAGGCGGAGCCGTGGAGAC
GGACCGCCTCCCCTCCGACGTGCGGGACCGGGCCATGGAGGCGGTCGACCACTTCGGCGG
TCGCGTCACCATAGGAGACGTCGCTTCTCGCGCTGGGCTGCAGCTCGCGCAGGCGGAGCG
CGCGCTCCAAGCACTCGCCGCCGACACTGAAGGCTTCCTGGAGGTATCGGAGGACGGGGA
GGTGCTATACGTCTTCCCAAAGGACTACAGGGCAAAGCTGGCTGGCAAATCGTTTAGGAT
GCGGGTCGAGCCTCTGGTTGACAAAGCCAAGCAAGTGGGTGCTTATCTGGTACGTGTTTC
ATTTGGCACTGCGCTCATTGCCTCAATTGTGCTGGTGTACACTACAATCATTGCCATTCT
CTCAAGCTCAAGTGATGAAGATGGTCGTGGGAGGCGGAGGAGATCTTATGGTTCTACTAT
CATCATTCCGACGGATATGTTTTGGTACTTGGATGCAGATTATTATAGAAGACGTCGAGT
AGAAAACGAAAATGGGATGAACTTTATTGAATCTGTATTTTCATTTGTGTTTGGGGATGG
TGATCCAAACGATGGGCTTGAAGAAAAGCGGTGGAAGATGATTGGACAGTATATTTCATC
AAATGGTGGAGTTGTTACAGCTGAAGAACTGGCACCATTTCTTGATGTGCCACCTCCATC
AGAAGAGTCCAAGGACGATGAATCATTTGTTCTTCCAGTTCTTTTACGCTTTCAGGGACA
TCCAGAAATTGATGAGCAGGGAAATATCCTGTATCGATTCCCATCGCTGCAACGTACTGC
TTCATCAAAAAGTGGTAGGAGCAGGGAATATGTGGGTACCAAATGGTCTGCAATGTTTAG
CGGAGTTGAAAAGTACTTAGAGGAGAAACCGTGGAAATTCAGTAAAGCGAATGCAACAGA
GAAGGCGATGGTTGCTGGTTTGGGAGGACTCAATCTCTTTGGTGTCATCATTCTTGGAAA
CTTGTTGAAGCAAATGACAGTGACACCTGGTGGACTAATCTCATTTGCCGCACAGTTATA
TCCTTTGCTTCAGATATACGCTGGCTCCTTTTTTGCAATACCTTTGTTTAGATGGTTTCT
GCTACGCAAGACCAACAATGGCATTAAAAAGAGGAATAAGGCCAGAGAACAGAGAGCTCA
GGAGCTCGTGTCACCAGATTCTTCTCTAAGAAGAAAGTTGCTCAGTGCACGTGATATGGC
TGAACGGAAAGTAATCACGCCAGAGGAGATTGTCTATACTACTGAAAAGGATCTATTGGA
GCAGGATTATGAAGTCAAGGAGTGGGAGAGGAGATTTAAGGAGCTCGAGTCAGAGTGATG
GACATGACCGATATACTTGACACTTGCAGTAGCTCTACATGGTCCTCACCATACTTGTCG
GTGATTTTTATCCGCATCCAACGGAGTGGAAGATGGATCTGACTGAACCACTCGAGCAAG
CGAAACTGGATGGTACTGGACCTCACTAATTGTCGTGTCACCACCAGCCCACCACTGACC
ACTTCGCTATGGAAGTTTTGTGGAAGCTGTTGGTTTAATTGGAACCGACCATTATTTGCA
AGATGATGTTCGTATCTGTGCCATTGACCTGCATATATGTATAGTTCCAATCACGGATCA
AATTCAGAATTTGAC