Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d016690_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:5:172636956:172639352:-1 gene:Zm00001d016690 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein
Sequence	ATGGCGCTTCCTCCTCCTCCTCACTCGCTGCCGCGCGCTTCCAGCTTCACGAGCAGCGCC GTCACCCCCGAGTCCCCACGCAGGGGCAGCCACAGACCCAATAATACGTTCGTCCCAAAC GCCTCCACCACTGCCGCCGCCGCGGCGCAGCTCTCGCTGCTCCGCGCCCACGCCCGCGCC GGCCGGATGCAGCCCGCGCGGGAGGTGTTCGACGCAATGCCGGATCGAGGGAGGTCCCTC GTCGCCTGGACCACGCTCATGTCCGGGTACGCCACCCACGGCCCAGCCTCCGAGGCGCTC GAGCTGCTCCTCTGCATGCTCGGCCTTCTCGTCAGACCAGACGCCTTCGTCTTCTCCGTC GCGCTGCGCGCCTGCGCCGCCGTGGGGAGCCTCCGGCTCGGCAGGCAGCTCCACGGCGCC GTCGCCAAGCTCGGGTACGTGGGCGTTGACCTCTTCGTGGCCAACGGCCTCGTCACCATG TACTCGAGCTGCCAGTCCCTCCCCTGCGCCGAGAAGGTCTTCGGCAGTATCGCCTCTCCT GACCTGGTCTCGTGGACCTCCATGCTCAGTGCGTACACCGAGAACGGACGTGACGCCGAA GCACTGGTGCTGTTCATGGAGATGGCCCGTGGTGGCGTCGCTTGCGACGCTTTTACGCTG TCGGTGGCGCTAAGGGCAGCTTCGAGTCTGGGTCACGTGGGAGTGGGGCTGGGCCATCAG CTACACTGCTGCATGATCAAGATGGGGTTGGTCGGCAAGGAGTTCCTGGATAACTGTCTG ATTGGGTTCTACGGACGGTCAGGTGAACTGCAGCTGATGAGGAACGTGTTCGATGAGATG AATGGCAAAGATTTGGTTTCTTGGAACACCGTAATCCAGTGCTATGCGGAAAACCTGTGC CACGAAGAAGCCTCAGCTCATTTTCGTGCTATGATGTTTGAATTCGCAGAGTGCGACGAG TTTACGCTCGGCAGCATTCTTCAGGTCGTGACCAGAACTGGTGCTTTTGGTCATGGTATG GAAATACACGGCTACCTCATCAGAGCCGGTTTGGACTCCGACAAGCACGTTATGAGCGCT CTCATGGATATGTACGTCAATTGGGCGAGTCTTGGTAAGACGCACCGGGTGATTCCTCTG AGAATGCTAAAATACTATCTGACAATCCAGGGCAAGCTGGATCAGTTCATCGTGGCAAGC AGTCTGAAGTCATGTGCTTCTGGCCTAGATCTGCTGGCAGGGAGGATGTTGCACGCTTGC ATTTTGAAATCTGATATGAATCCAGATTCTTTTGTTACTAGTTCGCTGCTGGACATGTAC GCTAAGTGCGGTGCTCTGGAGGAATCAAATCTCCTGTTTTCAAGAACCAAGAATCCAGGC ACAGCTGAGTGGTCTGCCGCCATCTCAGGGAACTGTCTGAATGGCCAGTACGGGAGAGCA GTGCAGTTGTTTAGGAGGATGCAGTCAGAGCATGTGCAGCCTAACGAATTCACCTACACC GCTATACTTACGGCATGCATGGCGCTTGGAGATACGGCCAGTGGTGTGGAGATCCACAGC AACTCGATTCGAAATGGGTATGGAACCAACGCCTCTGTCCTGAAAAGTTTGATTGCCTTC TACCTAAGGCAGGGTCGGTACCACCAGGCTCTGAAACTGTGCTTAGCACTCTCAAACCGT GATGTTTCTTGGGGCACACTGGTTGAATCACTTTCTCAAGTTGACCATCATGTTGGAATA GTTAATCTCCTTCATGTTATCCAACGCTGTGGGGCGAACCTGGACTGCCATACAGCACGT CTCATCTTGAGCTCGTGCGGGAAGCTGGGACTTCTTGAGGAAGGGCTGCAAGCACATGCC TACATGACCAAGCGTGGCCTTGCTTCCTCAGCTTGCACCAACAGCTACCTCATCGACATG TATTCAAGTGTTGGTAGCCTGAGACATGCGTCCGATGCCTTCAACTACATGCCTGCCAAG GATGCGTCCTCCTGGGCCTCAATAGTGGCGGCAAACGTCGAGAACGGCTGCCCAGAGACC GCCATTCGCCTGTTCTCACAGATGGAGGAGAAGTGCCGTCCGACGCCGGAGGCGTTTTTA TCTGTGCTCAAGGCCTGCGCGAGAACTGGCCTAGTGAGTGAAGCGTTCAGGTTTTTTGTG TCCATGACGGAGGTTTACAAGATACAGCCCTCGGAGGAGCACTATTCCCACATGATTCAA GTCTTGAGTCGTGCGGGGATGTTCAAGGAGGCAGAGCATTTCATCGACAGTGTTGTTCCT TCTGAATCTGGCACGTCGGCGTGGAGCTTGCTTTCTGCTGCTGCGCAACAGAACGGAAAT GATAAGACGGTAAAGCTTGCAGGAGACAGACTAGCAAGGCTTCCTGGTGGCAGCTGA

Peptide Sequence

PEP ID	Zm00001d016690_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:5:172636956:172639352:-1 gene:Zm00001d016690 transcript:Zm00001d016690_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein
Sequence	MALPPPPHSLPRASSFTSSAVTPESPRRGSHRPNNTFVPNASTTAAAAAQLSLLRAHARA GRMQPAREVFDAMPDRGRSLVAWTTLMSGYATHGPASEALELLLCMLGLLVRPDAFVFSV ALRACAAVGSLRLGRQLHGAVAKLGYVGVDLFVANGLVTMYSSCQSLPCAEKVFGSIASP DLVSWTSMLSAYTENGRDAEALVLFMEMARGGVACDAFTLSVALRAASSLGHVGVGLGHQ LHCCMIKMGLVGKEFLDNCLIGFYGRSGELQLMRNVFDEMNGKDLVSWNTVIQCYAENLC HEEASAHFRAMMFEFAECDEFTLGSILQVVTRTGAFGHGMEIHGYLIRAGLDSDKHVMSA LMDMYVNWASLGKTHRVIPLRMLKYYLTIQGKLDQFIVASSLKSCASGLDLLAGRMLHAC ILKSDMNPDSFVTSSLLDMYAKCGALEESNLLFSRTKNPGTAEWSAAISGNCLNGQYGRA VQLFRRMQSEHVQPNEFTYTAILTACMALGDTASGVEIHSNSIRNGYGTNASVLKSLIAF YLRQGRYHQALKLCLALSNRDVSWGTLVESLSQVDHHVGIVNLLHVIQRCGANLDCHTAR LILSSCGKLGLLEEGLQAHAYMTKRGLASSACTNSYLIDMYSSVGSLRHASDAFNYMPAK DASSWASIVAANVENGCPETAIRLFSQMEEKCRPTPEAFLSVLKACARTGLVSEAFRFFV SMTEVYKIQPSEEHYSHMIQVLSRAGMFKEAEHFIDSVVPSESGTSAWSLLSAAAQQNGN DKTVKLAGDRLARLPGGS

Transcript Sequence

Transcript ID	Zm00001d016690_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:5:172636956:172639352:-1 gene:Zm00001d016690 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein
Sequence	ATGGCGCTTCCTCCTCCTCCTCACTCGCTGCCGCGCGCTTCCAGCTTCACGAGCAGCGCC GTCACCCCCGAGTCCCCACGCAGGGGCAGCCACAGACCCAATAATACGTTCGTCCCAAAC GCCTCCACCACTGCCGCCGCCGCGGCGCAGCTCTCGCTGCTCCGCGCCCACGCCCGCGCC GGCCGGATGCAGCCCGCGCGGGAGGTGTTCGACGCAATGCCGGATCGAGGGAGGTCCCTC GTCGCCTGGACCACGCTCATGTCCGGGTACGCCACCCACGGCCCAGCCTCCGAGGCGCTC GAGCTGCTCCTCTGCATGCTCGGCCTTCTCGTCAGACCAGACGCCTTCGTCTTCTCCGTC GCGCTGCGCGCCTGCGCCGCCGTGGGGAGCCTCCGGCTCGGCAGGCAGCTCCACGGCGCC GTCGCCAAGCTCGGGTACGTGGGCGTTGACCTCTTCGTGGCCAACGGCCTCGTCACCATG TACTCGAGCTGCCAGTCCCTCCCCTGCGCCGAGAAGGTCTTCGGCAGTATCGCCTCTCCT GACCTGGTCTCGTGGACCTCCATGCTCAGTGCGTACACCGAGAACGGACGTGACGCCGAA GCACTGGTGCTGTTCATGGAGATGGCCCGTGGTGGCGTCGCTTGCGACGCTTTTACGCTG TCGGTGGCGCTAAGGGCAGCTTCGAGTCTGGGTCACGTGGGAGTGGGGCTGGGCCATCAG CTACACTGCTGCATGATCAAGATGGGGTTGGTCGGCAAGGAGTTCCTGGATAACTGTCTG ATTGGGTTCTACGGACGGTCAGGTGAACTGCAGCTGATGAGGAACGTGTTCGATGAGATG AATGGCAAAGATTTGGTTTCTTGGAACACCGTAATCCAGTGCTATGCGGAAAACCTGTGC CACGAAGAAGCCTCAGCTCATTTTCGTGCTATGATGTTTGAATTCGCAGAGTGCGACGAG TTTACGCTCGGCAGCATTCTTCAGGTCGTGACCAGAACTGGTGCTTTTGGTCATGGTATG GAAATACACGGCTACCTCATCAGAGCCGGTTTGGACTCCGACAAGCACGTTATGAGCGCT CTCATGGATATGTACGTCAATTGGGCGAGTCTTGGTAAGACGCACCGGGTGATTCCTCTG AGAATGCTAAAATACTATCTGACAATCCAGGGCAAGCTGGATCAGTTCATCGTGGCAAGC AGTCTGAAGTCATGTGCTTCTGGCCTAGATCTGCTGGCAGGGAGGATGTTGCACGCTTGC ATTTTGAAATCTGATATGAATCCAGATTCTTTTGTTACTAGTTCGCTGCTGGACATGTAC GCTAAGTGCGGTGCTCTGGAGGAATCAAATCTCCTGTTTTCAAGAACCAAGAATCCAGGC ACAGCTGAGTGGTCTGCCGCCATCTCAGGGAACTGTCTGAATGGCCAGTACGGGAGAGCA GTGCAGTTGTTTAGGAGGATGCAGTCAGAGCATGTGCAGCCTAACGAATTCACCTACACC GCTATACTTACGGCATGCATGGCGCTTGGAGATACGGCCAGTGGTGTGGAGATCCACAGC AACTCGATTCGAAATGGGTATGGAACCAACGCCTCTGTCCTGAAAAGTTTGATTGCCTTC TACCTAAGGCAGGGTCGGTACCACCAGGCTCTGAAACTGTGCTTAGCACTCTCAAACCGT GATGTTTCTTGGGGCACACTGGTTGAATCACTTTCTCAAGTTGACCATCATGTTGGAATA GTTAATCTCCTTCATGTTATCCAACGCTGTGGGGCGAACCTGGACTGCCATACAGCACGT CTCATCTTGAGCTCGTGCGGGAAGCTGGGACTTCTTGAGGAAGGGCTGCAAGCACATGCC TACATGACCAAGCGTGGCCTTGCTTCCTCAGCTTGCACCAACAGCTACCTCATCGACATG TATTCAAGTGTTGGTAGCCTGAGACATGCGTCCGATGCCTTCAACTACATGCCTGCCAAG GATGCGTCCTCCTGGGCCTCAATAGTGGCGGCAAACGTCGAGAACGGCTGCCCAGAGACC GCCATTCGCCTGTTCTCACAGATGGAGGAGAAGTGCCGTCCGACGCCGGAGGCGTTTTTA TCTGTGCTCAAGGCCTGCGCGAGAACTGGCCTAGTGAGTGAAGCGTTCAGGTTTTTTGTG TCCATGACGGAGGTTTACAAGATACAGCCCTCGGAGGAGCACTATTCCCACATGATTCAA GTCTTGAGTCGTGCGGGGATGTTCAAGGAGGCAGAGCATTTCATCGACAGTGTTGTTCCT TCTGAATCTGGCACGTCGGCGTGGAGCTTGCTTTCTGCTGCTGCGCAACAGAACGGAAAT GATAAGACGGTAAAGCTTGCAGGAGACAGACTAGCAAGGCTTCCTGGTGGCAGCTGA