Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d016684_T034
CDS Infomation	cds chromosome:B73_RefGen_v4:5:172414374:172429963:-1 gene:Zm00001d016684 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:amylose extender1 description:1%2C4-alpha-glucan-branching enzyme 2%2C chloroplastic/amyloplastic
Sequence	ATGGCGTTCGCGGTTTCTGGGGCGGTGCTCGGTGGGGCCGTAAGGGCTCCCCGACTCACC GGCGGCGGGGAGGGTAGTCTAGTCTTCCGGCACACCGGCCTCTTCTTAACTCGGGGTGCT CGAGTTGGATGTTCGGGGACGCACGGGGCCATGCGCGCGGCGGCCGCGGCCAGGAAGGCG GTCATGGTTCCTGAGGGCGAGAATGATGGCCTCGCATCAAGGGCTGACTCGGCTCAATTC CAGTCGGATGAACTGGAGGTACCAGACATTTCTGAAGAGACAACGTGCGGTGCTGGTGTG GCTGATGCTCAAGCCTTGAACAGAGTTCGAGTGGTCCCCCCACCAAGCGATGGACAAAAA ATATTCCAGATTGACCCCATGTTGCAAGGCTATAAGTACCATCTTGAGTATCGGTACAGC CTCTATAGAAGAATCCGTTCAGACATTGATGAACATGAAGGAGGCTTGGAAGCCTTCTCC CGTAGTTATGAGAAGTTTGGATTTAATCGCAGCGCGGAAGGTATCACATATCGAGAATGG GCTCCTGGAGCATTTTCTGCAGCATTGGTGGGTGACTTCAACAACTGGGATCCAAATGCA GATCGTATGAGCAAAAATGAGTTTGGTGTTTGGGAAATTTTTCTGCCTAACAATGCAGAT GGTACATCACCTATTCCTCATGGATCTCGTGTAAAGGTGAGAATGGATACTCCATCAGGG ATAAAGGATTCAATTCCAGCCTGGATCAAGTACTCAGTGCAGGCCCCAGGAGAAATACCA TATGATGGGATTTATTATGATCCTCCTGAAGAGGTAAAGTATGTGTTCAGGCATGCGCAA CCTAAACGACCAAAATCATTGCGGATATATGAAACACATGTCGGAATGAGTAGCCCGGAA CCGAAGATAAACACATATGTAAACTTTAGGGATGAAGTCCTCCCAAGAATAAAAAAACTT GGATACAATGCAGTGCAAATAATGGCAATCCAAGAGCACTCATATTATGGAAGCTTTGGA TACCATGTAACTAATTTTTTTGCGCCAAGTAGTCGTTTTGGTACCCCAGAAGAATTGAAG TCTTTGATTGATAGAGCACATGAGCTTGGTTTGCTAGTTCTCATGGATGTGGTTCATAGT CATGCGTCAAGTAATACTCTGGATGGGTTGAATGGTTTTGATGGTACAGATACACATTAC TTTCACAGTGGTCCACGTGGCCATCACTGGATGTGGGATTCTCGCCTATTTAACTATGGG AACTGGGAAGTTTTAAGATTTCTTCTCTCCAATGCTAGATGGTGGCTCGAGGAATATAAG TTTGATGGTTTCCGTTTTGATGGTGTGACCTCCATGATGTACACTCATCACGGATTACAA GTAACATTTACGGGGAACTTCAATGAGTATTTTGGCTTTGCCACCGATGTAGATGCAGTG GTTTACTTGATGCTGGTAAATGATCTAATTCATGGACTTTATCCTGAGGCTGTAACCATT GGTGAAGATGTTAGTGGAATGCCTACATTTGCCCTTCCTGTTCACGATGGTGGGGTAGGT TTTGACTATCGGATGCATATGGCTGTGGCTGACAAATGGATTGACCTTCTCAAGCAAAGT GATGAAACTTGGAAGATGGGTGATATTGTGCACACACTGACAAATAGGAGGTGGTTAGAG AAGTGTGTAACTTATGCTGAAAGTCATGATCAAGCATTAGTCGGCGACAAGACTATTGCG TTTTGGTTGATGGACAAGGATATGTATGATTTCATGGCCCTCGATAGACCTTCAACTCCT ACCATTGATCGTGGGATAGCATTACATAAGATGATTAGACTTATCACAATGGGTTTAGGA GGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGAATGGATAGATTTT CCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTATTCCAGGGAATAACAACAGTTAT GACAAATGTCGTCGAAGATTTGACCTGGGTGATGCAGACTATCTTAGGTATCATGGTATG CAAGAGTTTGATCAGGCAATGCAACATCTT

Peptide Sequence

PEP ID	Zm00001d016684_P034
PEP Infomation	pep chromosome:B73_RefGen_v4:5:172414374:172429963:-1 gene:Zm00001d016684 transcript:Zm00001d016684_T034 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:amylose extender1 description:1%2C4-alpha-glucan-branching enzyme 2%2C chloroplastic/amyloplastic
Sequence	MAFAVSGAVLGGAVRAPRLTGGGEGSLVFRHTGLFLTRGARVGCSGTHGAMRAAAAARKA VMVPEGENDGLASRADSAQFQSDELEVPDISEETTCGAGVADAQALNRVRVVPPPSDGQK IFQIDPMLQGYKYHLEYRYSLYRRIRSDIDEHEGGLEAFSRSYEKFGFNRSAEGITYREW APGAFSAALVGDFNNWDPNADRMSKNEFGVWEIFLPNNADGTSPIPHGSRVKVRMDTPSG IKDSIPAWIKYSVQAPGEIPYDGIYYDPPEEVKYVFRHAQPKRPKSLRIYETHVGMSSPE PKINTYVNFRDEVLPRIKKLGYNAVQIMAIQEHSYYGSFGYHVTNFFAPSSRFGTPEELK SLIDRAHELGLLVLMDVVHSHASSNTLDGLNGFDGTDTHYFHSGPRGHHWMWDSRLFNYG NWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVTFTGNFNEYFGFATDVDAV VYLMLVNDLIHGLYPEAVTIGEDVSGMPTFALPVHDGGVGFDYRMHMAVADKWIDLLKQS DETWKMGDIVHTLTNRRWLEKCVTYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTP TIDRGIALHKMIRLITMGLGGEGYLNFMGNEFGHPEWIDFPRGPQRLPSGKFIPGNNNSY DKCRRRFDLGDADYLRYHGMQEFDQAMQHL

Transcript Sequence

Transcript ID	Zm00001d016684_T034
Transcript Infomation	cdna chromosome:B73_RefGen_v4:5:172414374:172429963:-1 gene:Zm00001d016684 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:amylose extender1 description:1%2C4-alpha-glucan-branching enzyme 2%2C chloroplastic/amyloplastic
Sequence	CTGCAGTCACCCAGAGCAGACCCGGATTTCGCTCTTGCGGTCGCTGGGGTTTTAGCATTG GCTGATCAGTTCGATCCGATCCGGCTGCGAAGGCGAGATGGCGTTCGCGGTTTCTGGGGC GGTGCTCGGTGGGGCCGTAAGGGCTCCCCGACTCACCGGCGGCGGGGAGGGTAGTCTAGT CTTCCGGCACACCGGCCTCTTCTTAACTCGGGGTGCTCGAGTTGGATGTTCGGGGACGCA CGGGGCCATGCGCGCGGCGGCCGCGGCCAGGAAGGCGGTCATGGTTCCTGAGGGCGAGAA TGATGGCCTCGCATCAAGGGCTGACTCGGCTCAATTCCAGTCGGATGAACTGGAGGTACC AGACATTTCTGAAGAGACAACGTGCGGTGCTGGTGTGGCTGATGCTCAAGCCTTGAACAG AGTTCGAGTGGTCCCCCCACCAAGCGATGGACAAAAAATATTCCAGATTGACCCCATGTT GCAAGGCTATAAGTACCATCTTGAGTATCGGTACAGCCTCTATAGAAGAATCCGTTCAGA CATTGATGAACATGAAGGAGGCTTGGAAGCCTTCTCCCGTAGTTATGAGAAGTTTGGATT TAATCGCAGCGCGGAAGGTATCACATATCGAGAATGGGCTCCTGGAGCATTTTCTGCAGC ATTGGTGGGTGACTTCAACAACTGGGATCCAAATGCAGATCGTATGAGCAAAAATGAGTT TGGTGTTTGGGAAATTTTTCTGCCTAACAATGCAGATGGTACATCACCTATTCCTCATGG ATCTCGTGTAAAGGTGAGAATGGATACTCCATCAGGGATAAAGGATTCAATTCCAGCCTG GATCAAGTACTCAGTGCAGGCCCCAGGAGAAATACCATATGATGGGATTTATTATGATCC TCCTGAAGAGGTAAAGTATGTGTTCAGGCATGCGCAACCTAAACGACCAAAATCATTGCG GATATATGAAACACATGTCGGAATGAGTAGCCCGGAACCGAAGATAAACACATATGTAAA CTTTAGGGATGAAGTCCTCCCAAGAATAAAAAAACTTGGATACAATGCAGTGCAAATAAT GGCAATCCAAGAGCACTCATATTATGGAAGCTTTGGATACCATGTAACTAATTTTTTTGC GCCAAGTAGTCGTTTTGGTACCCCAGAAGAATTGAAGTCTTTGATTGATAGAGCACATGA GCTTGGTTTGCTAGTTCTCATGGATGTGGTTCATAGTCATGCGTCAAGTAATACTCTGGA TGGGTTGAATGGTTTTGATGGTACAGATACACATTACTTTCACAGTGGTCCACGTGGCCA TCACTGGATGTGGGATTCTCGCCTATTTAACTATGGGAACTGGGAAGTTTTAAGATTTCT TCTCTCCAATGCTAGATGGTGGCTCGAGGAATATAAGTTTGATGGTTTCCGTTTTGATGG TGTGACCTCCATGATGTACACTCATCACGGATTACAAGTAACATTTACGGGGAACTTCAA TGAGTATTTTGGCTTTGCCACCGATGTAGATGCAGTGGTTTACTTGATGCTGGTAAATGA TCTAATTCATGGACTTTATCCTGAGGCTGTAACCATTGGTGAAGATGTTAGTGGAATGCC TACATTTGCCCTTCCTGTTCACGATGGTGGGGTAGGTTTTGACTATCGGATGCATATGGC TGTGGCTGACAAATGGATTGACCTTCTCAAGCAAAGTGATGAAACTTGGAAGATGGGTGA TATTGTGCACACACTGACAAATAGGAGGTGGTTAGAGAAGTGTGTAACTTATGCTGAAAG TCATGATCAAGCATTAGTCGGCGACAAGACTATTGCGTTTTGGTTGATGGACAAGGATAT GTATGATTTCATGGCCCTCGATAGACCTTCAACTCCTACCATTGATCGTGGGATAGCATT ACATAAGATGATTAGACTTATCACAATGGGTTTAGGAGGAGAGGGCTATCTTAATTTCAT GGGAAATGAGTTTGGACATCCTGAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCC AAGTGGTAAGTTTATTCCAGGGAATAACAACAGTTATGACAAATGTCGTCGAAGATTTGA CCTGGGTGATGCAGACTATCTTAGGTATCATGGTATGCAAGAGTTTGATCAGGCAATGCA ACATCTTG