Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d016664_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:5:171903271:171908275:1 gene:Zm00001d016664 gene_biotype:protein_coding transcript_biotype:protein_coding description:Chaperone protein ClpD chloroplastic
Sequence	ATGGAGGTGTGCTGCTGCTCCACCTCGTCGTCCGTCCTCACCGCCGGGGGCCGCGGCGCC GCGGCGCGGAGGCTGGCCGCGCCGGCGGCTCGCTGGGGCGCAGCGGGGTTCGGGAGGGCG GTGGTGCTGGCGCACCCGCTCCCACGCCCGGCATCCGCGGCCGCGGCGGCGCCCACGCGC CGGGCGCGCAGGGGGGGCGTCGGCGTCGTCAGGGCGGTGTTCGAGCGGTTCACGGAGCGG GCCGTCAAGGCGGTCGTGCTGTCGCAGCGGGAGGCCCGGGGGCTCGGGGAGCCCGCCGTG GCGCCGCGCCACCTCCTCCTCGGCCTGGTCGCCGAGGACCGATCCTCGGGCGGCTTCCTC TCGTCGGGGATCAACATCGAGCGCGCGCGCGAGGAGTGCCGCGGCATCGCTGCCAGTGCC AGGGACGCGGACTCGGCCACCGCGGCGTCTAGGCCCGGGTCGTCGGGGCTCGACACGGAC GTGCCCTTCGCCGCGCCCACCAAGCAGGTCTTCGACGTGGCCGTCGTGCTCTCCAAGAAC ATGGGCTCCAGCTTCGTCTCGCCCGAGCACCTCGCCATCGCACTCTTCTCCCTCGACGAT CCAACCACCAACAACCTCCTAAGGAGTTTGGGAGCGGATCCCAGTCATCTAGCATCGGTT GCAGTCGACCGTCTCCAAGCAGAGCTTGCGAAAGATGGCAGAGATCCTGCTGAACCATCA TCTTTCAAAGTTCCAAAGAAAGCCCCTGCTGCAGCCGGAAGATCTGCCTTCTCCCAGTCC TTGACTAAAAAGAAAGATAAGGGTGCGCTGGATCAATTTTGTTTGGATTTGACCACACAA GCTAGTGGAGGTTTCATTGATCCTATTATTGGCCGTGAAGAAGAGATTGAAAGAGTAGTT CAGATAGTATGCCGGCGGACGAAGAACAACCCTATTCTTTTGGGTGAGGCGGGTGTTGGC AAAACTGCAATTGCCGAGGGTCTGGCTCTTCGAATTGCAAATGGAGATGTCCCCATTTAC CTTGTGGCAAAGCGCATATTGTCGCTAGATGTTGGTCTCCTTATTGCTGGTGCAAAGGAG AGGGGTGAACTGGAGTCTAGGGTTACTAATATAATCCGCGAGGTCCGGGAAGCAGGCGAT GTTATTCTTTTTATTGATGAGGTCCACAACCTTATTGGATCTGGAACTGTTGGAAAGAGT AAGGGTTCTGGTCTTGACATTGGCAACTTGCTGAAGCCCGCGCTTGCTAGAGGTGAATTG CAGTGCATTGCTGCTACAACTCTAGATGAACACCGGATGCATTTTGAGAAGGATAAGGCT TTGGCCCGCCGCTTCCAGCCAGTACTAGTAGATGAGCCTAGTCAGGAAGATGCTGTGAAG ATATTACTGGGTCTTCGTGAAAAATATGAAACTTACCATAAATGCAAATTCACATTGGAA GCCATCAATGCAGCAGTTTATTTGTCAGCAAGATACATTCCTGACAGACAGCTTCCTGAT AAGGCTATTGATCTGATTGATGAGGCTGGAAGTAGAGCTCGGATGGAATCATTTAATAGG AAGAAGGAAGGGCAGTCTTCGATTCTCTTGAAGTCACCAGATGAATACTGGCAAGAGATA AGAGCTGCTCAGGCCATGCATGAAGTGGTGTTATCTAACAAGGAAAAATATTCTCCAAAT GAGAATGCTGAAGAGAGTGGTAGTGCTAACGTTGAAGCACTACACAGAGACAATATTGAG TCAACATCTACTTCATCACTCTCAGCTGATGAACCAGTTGTAGTTGGGACAGAGGAAATT GCAAGGGTTGCCTCATTATGGTCTGGGATACCAGTACAGCAGTTGACTGCCGACGATAAA AAACTTCTAGTAGGACTGGACGACGAACTCAGAAAACGTGTCATTGGCCAAGATGATGCT GTTGTGGCCATATCTCGTGCAGTGAAGAGATCACGTGTTGGCCTTAACGATCCTGATAGA CCTATTGCTACGCTGCTTTTCTGTGGTCCAACAGGAGTTGGTAAAACAGAGCTCACCAAA GCTCTAGCAGCTAGTTATTTTGGATCGGAATCTGCTATGCTTAGGTTAGACATGAGCGAG TATATGGAGAGGCACACTGTGAGCAAGCTCATAGGCTCTCCTCCAGGGTACATTGGGTAT GGTGAAACTGGTACTTTGACAGAAGCAGTCAGGAGAAAACCATTTACTGTGGTATTGTTG GATGAGATAGAGAAAGCTCACCCTGATATTTTCAACATCCTTCTCCAAATATTTGAGGAT GGACATTTGACAGACTCACAGGGTCGCAGGGTTTCCTTCAAAAATACGTTGATTGTCATG ACTTCGAATGTTGGTTCAACATCAATTTCAAAAGGAAGACAGAGCATAGGTTTCTTGAAG GAAGATACCGAGTCAGGCTCATACTTCGCAATGAAATCCTTAGTGATGGAAGAGCTCAAG GCATTTTTCCGTCCAGAGTTGCTCAATAGAATCGACGAGATGGTTGTGTTCCGTCCTCTG GAGAAGACTCAGATGCTGGCCATTCTTGATATCATCCTAAAGGAAGTCAAGGGCCGACTT TTGGCCCTCGGGATAGGTTTGGAGGTGTCTGATGCAATGAAGGACCTGATATGCCAAGAG GGCTACGACAAAAGCTATGGCGCTCGGCCTCTGAGGAGAGCTGTCACCCACATTATCGAG GATGTCATCAGCGAAGCGATTCTTTTTGGCGAGTTCAAGCCCGGTGACACGATACTGATG GACATCGATGCAGAGGGGAAGCCATGCATGGGCCATCTGGACCAACAGATCGTCCAGGTC TCTGACCCAACACGGGCAATCTGA

Peptide Sequence

PEP ID	Zm00001d016664_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:5:171903271:171908275:1 gene:Zm00001d016664 transcript:Zm00001d016664_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Chaperone protein ClpD chloroplastic
Sequence	MEVCCCSTSSSVLTAGGRGAAARRLAAPAARWGAAGFGRAVVLAHPLPRPASAAAAAPTR RARRGGVGVVRAVFERFTERAVKAVVLSQREARGLGEPAVAPRHLLLGLVAEDRSSGGFL SSGINIERAREECRGIAASARDADSATAASRPGSSGLDTDVPFAAPTKQVFDVAVVLSKN MGSSFVSPEHLAIALFSLDDPTTNNLLRSLGADPSHLASVAVDRLQAELAKDGRDPAEPS SFKVPKKAPAAAGRSAFSQSLTKKKDKGALDQFCLDLTTQASGGFIDPIIGREEEIERVV QIVCRRTKNNPILLGEAGVGKTAIAEGLALRIANGDVPIYLVAKRILSLDVGLLIAGAKE RGELESRVTNIIREVREAGDVILFIDEVHNLIGSGTVGKSKGSGLDIGNLLKPALARGEL QCIAATTLDEHRMHFEKDKALARRFQPVLVDEPSQEDAVKILLGLREKYETYHKCKFTLE AINAAVYLSARYIPDRQLPDKAIDLIDEAGSRARMESFNRKKEGQSSILLKSPDEYWQEI RAAQAMHEVVLSNKEKYSPNENAEESGSANVEALHRDNIESTSTSSLSADEPVVVGTEEI ARVASLWSGIPVQQLTADDKKLLVGLDDELRKRVIGQDDAVVAISRAVKRSRVGLNDPDR PIATLLFCGPTGVGKTELTKALAASYFGSESAMLRLDMSEYMERHTVSKLIGSPPGYIGY GETGTLTEAVRRKPFTVVLLDEIEKAHPDIFNILLQIFEDGHLTDSQGRRVSFKNTLIVM TSNVGSTSISKGRQSIGFLKEDTESGSYFAMKSLVMEELKAFFRPELLNRIDEMVVFRPL EKTQMLAILDIILKEVKGRLLALGIGLEVSDAMKDLICQEGYDKSYGARPLRRAVTHIIE DVISEAILFGEFKPGDTILMDIDAEGKPCMGHLDQQIVQVSDPTRAI

Transcript Sequence

Transcript ID	Zm00001d016664_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:5:171903271:171908275:1 gene:Zm00001d016664 gene_biotype:protein_coding transcript_biotype:protein_coding description:Chaperone protein ClpD chloroplastic
Sequence	CGAACTGCCATTCCGGACTCGTGTCCCTCCTTCCTTGCGTGCTTCCTTCCCCTTCCTTCC GTTCCGTCCTCCCCGCCTCCGCCCCCGCCTCCGCCGCGCGGTATTTTTATACCGCTCTCC CCCGTCTCCTCCTCGCCTACTCATCCACTCGCCACGCCACGCCACGCCACGCCTCCAACT CCAAGCAGATAGATAGACTAGATAGCTGTTGGCGTGCGACGCGTAGCGAGAGCGTGACTA ACCGCTGCCTAAGCAAGCATATAAGCATTTGATTCGTTCCTAGGACAGGGGAGGGTTAAG GTAGTTCCTTAATTTTTCTTGTTTCTTTTTTTGTGTGTCGTTGCTGGTGCGGTAGCTATG GAGGTGTGCTGCTGCTCCACCTCGTCGTCCGTCCTCACCGCCGGGGGCCGCGGCGCCGCG GCGCGGAGGCTGGCCGCGCCGGCGGCTCGCTGGGGCGCAGCGGGGTTCGGGAGGGCGGTG GTGCTGGCGCACCCGCTCCCACGCCCGGCATCCGCGGCCGCGGCGGCGCCCACGCGCCGG GCGCGCAGGGGGGGCGTCGGCGTCGTCAGGGCGGTGTTCGAGCGGTTCACGGAGCGGGCC GTCAAGGCGGTCGTGCTGTCGCAGCGGGAGGCCCGGGGGCTCGGGGAGCCCGCCGTGGCG CCGCGCCACCTCCTCCTCGGCCTGGTCGCCGAGGACCGATCCTCGGGCGGCTTCCTCTCG TCGGGGATCAACATCGAGCGCGCGCGCGAGGAGTGCCGCGGCATCGCTGCCAGTGCCAGG GACGCGGACTCGGCCACCGCGGCGTCTAGGCCCGGGTCGTCGGGGCTCGACACGGACGTG CCCTTCGCCGCGCCCACCAAGCAGGTCTTCGACGTGGCCGTCGTGCTCTCCAAGAACATG GGCTCCAGCTTCGTCTCGCCCGAGCACCTCGCCATCGCACTCTTCTCCCTCGACGATCCA ACCACCAACAACCTCCTAAGGAGTTTGGGAGCGGATCCCAGTCATCTAGCATCGGTTGCA GTCGACCGTCTCCAAGCAGAGCTTGCGAAAGATGGCAGAGATCCTGCTGAACCATCATCT TTCAAAGTTCCAAAGAAAGCCCCTGCTGCAGCCGGAAGATCTGCCTTCTCCCAGTCCTTG ACTAAAAAGAAAGATAAGGGTGCGCTGGATCAATTTTGTTTGGATTTGACCACACAAGCT AGTGGAGGTTTCATTGATCCTATTATTGGCCGTGAAGAAGAGATTGAAAGAGTAGTTCAG ATAGTATGCCGGCGGACGAAGAACAACCCTATTCTTTTGGGTGAGGCGGGTGTTGGCAAA ACTGCAATTGCCGAGGGTCTGGCTCTTCGAATTGCAAATGGAGATGTCCCCATTTACCTT GTGGCAAAGCGCATATTGTCGCTAGATGTTGGTCTCCTTATTGCTGGTGCAAAGGAGAGG GGTGAACTGGAGTCTAGGGTTACTAATATAATCCGCGAGGTCCGGGAAGCAGGCGATGTT ATTCTTTTTATTGATGAGGTCCACAACCTTATTGGATCTGGAACTGTTGGAAAGAGTAAG GGTTCTGGTCTTGACATTGGCAACTTGCTGAAGCCCGCGCTTGCTAGAGGTGAATTGCAG TGCATTGCTGCTACAACTCTAGATGAACACCGGATGCATTTTGAGAAGGATAAGGCTTTG GCCCGCCGCTTCCAGCCAGTACTAGTAGATGAGCCTAGTCAGGAAGATGCTGTGAAGATA TTACTGGGTCTTCGTGAAAAATATGAAACTTACCATAAATGCAAATTCACATTGGAAGCC ATCAATGCAGCAGTTTATTTGTCAGCAAGATACATTCCTGACAGACAGCTTCCTGATAAG GCTATTGATCTGATTGATGAGGCTGGAAGTAGAGCTCGGATGGAATCATTTAATAGGAAG AAGGAAGGGCAGTCTTCGATTCTCTTGAAGTCACCAGATGAATACTGGCAAGAGATAAGA GCTGCTCAGGCCATGCATGAAGTGGTGTTATCTAACAAGGAAAAATATTCTCCAAATGAG AATGCTGAAGAGAGTGGTAGTGCTAACGTTGAAGCACTACACAGAGACAATATTGAGTCA ACATCTACTTCATCACTCTCAGCTGATGAACCAGTTGTAGTTGGGACAGAGGAAATTGCA AGGGTTGCCTCATTATGGTCTGGGATACCAGTACAGCAGTTGACTGCCGACGATAAAAAA CTTCTAGTAGGACTGGACGACGAACTCAGAAAACGTGTCATTGGCCAAGATGATGCTGTT GTGGCCATATCTCGTGCAGTGAAGAGATCACGTGTTGGCCTTAACGATCCTGATAGACCT ATTGCTACGCTGCTTTTCTGTGGTCCAACAGGAGTTGGTAAAACAGAGCTCACCAAAGCT CTAGCAGCTAGTTATTTTGGATCGGAATCTGCTATGCTTAGGTTAGACATGAGCGAGTAT ATGGAGAGGCACACTGTGAGCAAGCTCATAGGCTCTCCTCCAGGGTACATTGGGTATGGT GAAACTGGTACTTTGACAGAAGCAGTCAGGAGAAAACCATTTACTGTGGTATTGTTGGAT GAGATAGAGAAAGCTCACCCTGATATTTTCAACATCCTTCTCCAAATATTTGAGGATGGA CATTTGACAGACTCACAGGGTCGCAGGGTTTCCTTCAAAAATACGTTGATTGTCATGACT TCGAATGTTGGTTCAACATCAATTTCAAAAGGAAGACAGAGCATAGGTTTCTTGAAGGAA GATACCGAGTCAGGCTCATACTTCGCAATGAAATCCTTAGTGATGGAAGAGCTCAAGGCA TTTTTCCGTCCAGAGTTGCTCAATAGAATCGACGAGATGGTTGTGTTCCGTCCTCTGGAG AAGACTCAGATGCTGGCCATTCTTGATATCATCCTAAAGGAAGTCAAGGGCCGACTTTTG GCCCTCGGGATAGGTTTGGAGGTGTCTGATGCAATGAAGGACCTGATATGCCAAGAGGGC TACGACAAAAGCTATGGCGCTCGGCCTCTGAGGAGAGCTGTCACCCACATTATCGAGGAT GTCATCAGCGAAGCGATTCTTTTTGGCGAGTTCAAGCCCGGTGACACGATACTGATGGAC ATCGATGCAGAGGGGAAGCCATGCATGGGCCATCTGGACCAACAGATCGTCCAGGTCTCT GACCCAACACGGGCAATCTGAAGCTGTGTTGGACCTTTTCCAGTGTAGTAGATTAGGGAT CTAAATCTTTTATTCTTTCAAGATAGAGATTATTAATTCTTTGTTACGTAGATATATAGA GTAGTATTTCATTATGTATATATATCAACCAGATGATCCAGATAGGGGAATCTGGTCAGT CATTGGAGTTATTTGAAATTTTCATCCAGCTGTATGTATATTGTTGAATTGTTTCTGATT CAACTGGCCATATATATCATCATTAAACTATCTTCATCGGCTTAC