Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d016634_T014
CDS Infomation

cds chromosome:B73_RefGen_v4:5:170834691:170838291:1 gene:Zm00001d016634 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable magnesium transporter NIPA8
Sequence

ATGTATGTTTCTGACTTTCTCGTAGCTGGAATAAAAATCAGAATTACATGGAATCATGTG
ATTAATGAAGATTTTGCTCCTCTTTCCAGAGTCATGGTAGCCACAACGTTTATTGTCTTT
GGCAACATCTTCTTAGTATCCTTCGGCAACCATCAATCGCCTGTTTACACGCCGGAGCAG
CTGATCGCAAAATACAGCAATTTGGTGTTTGTTCTTTATTGCATGTCATTGGTCTTTGTT
GTTGCGTTTAACCATTATCTCTACAGGAGTGGAGAAACTATTATTTCAAATAGTTCAAAA
GATGCTGGCACATATTGGCGAACAATGTTGCCATTTTCATATGCTGTTGTATCTGGTGCT
ATTGGATCTTGCTCAGTCTTGTTTGCAAAATCATTGTCTAACATGCTGAGACTGACGATG
AGCAGCAGATACGAGTTCCATAGCTGGTTCACATATTCGATCGTTCTCCTGTTTCTGTGT
ACTGCTGGATTTTGGATGGCAAGACTGAATGAGGGGCTGTCATTATTTGATGCAATACTG
ATTGTTCCAATGTTTCAAATTGCTTGGACCTTCTTCTCTATTTGTACAGGATTTGTTTAC
TTTCAAGAATATCAAGTATTTGATACGCTCAGGATAATTATGTTTGTGTTAGGCATGACA
TTTGTCTTTGTTGGGATTTCCTTGCTAGCACCCGATGACAGTAAAGCTGATACGAAAGAT
GGTTCAAGCACCGCCGATGACTCCATAATTGACATAGACAGAAATGGAAAGATGCCGATG
GAGGAGACAGACACAGATGATAGCATCTCCTTTGTTACTTCTGTAAAAGTAAATGCAAAA
CGTGTACTTTCAAAGGCAAAGTCTGCATGCTCCATGTCCCTTGGCCTTGGGGAGAGCACC
ATAAGCGCTTCATCGGTGCTTGCCATGCCGATGGTCTCGTCAAGAACAACCGGCTTCAGA
GGAATCGGAAATGACCGTCCAAAGTATGTCCCTTTAAGAACCACAGATTGGAGTAACCTA
TAG

Peptide Sequence

PEP ID

Zm00001d016634_P014
PEP Infomation

pep chromosome:B73_RefGen_v4:5:170834691:170838291:1 gene:Zm00001d016634 transcript:Zm00001d016634_T014 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable magnesium transporter NIPA8
Sequence

MYVSDFLVAGIKIRITWNHVINEDFAPLSRVMVATTFIVFGNIFLVSFGNHQSPVYTPEQ
LIAKYSNLVFVLYCMSLVFVVAFNHYLYRSGETIISNSSKDAGTYWRTMLPFSYAVVSGA
IGSCSVLFAKSLSNMLRLTMSSRYEFHSWFTYSIVLLFLCTAGFWMARLNEGLSLFDAIL
IVPMFQIAWTFFSICTGFVYFQEYQVFDTLRIIMFVLGMTFVFVGISLLAPDDSKADTKD
GSSTADDSIIDIDRNGKMPMEETDTDDSISFVTSVKVNAKRVLSKAKSACSMSLGLGEST
ISASSVLAMPMVSSRTTGFRGIGNDRPKYVPLRTTDWSNL

Transcript Sequence

Transcript ID

Zm00001d016634_T014
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:170834691:170838291:1 gene:Zm00001d016634 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable magnesium transporter NIPA8
Sequence

ACAGTGGTTCTTGCAGAGGTTTCAGGTTTGTAACAGACTGCTGGGGTGAATACACCTACT
CAAAAAAAAAAAAAGAGAGAAAATGGGAAAGAGACAAAGTTCTCGATGAATTGAAGTCCA
TATGTCAAAAACAAGAGCAAGGAGCTGTTGTACAAGGGGCTTGTGGAAGGAGCATATCAT
ATATTTGTAGGAGATAACTTTGCACTTGACTCATGGGCGATTGGATTATAGGGGCGTTGA
TAAACATCGTGGGAAGTGTTGCCATAAACTTTGGTACTAACCTTCTGAAGTTGGGCCATG
ATCAGAGAGAAAAGCTTTCCTCAATTAACAACAGTGAGGGAAATGAAAAATTCGTTCCAA
AATCTGTTATGCATTTCCAGACTTGGAGAATAGGTATACTCTTTTTTGCTGCTGGGAACT
GCCTCAATTTCATGTCATTTGCGTATGCTGCACAGGTTCGTTTCGCTGTCCTCAAGACCT
CAAGCAAGTTCAGTTTAACATGTAGGATATAATAATATGGGAAACTCATGGATGATTGTG
TAAAGTTGTCAAGAATAAAGCTCTTGTAGAGACTGTGGATTTGTGTTATGTTCAGGAATA
GCGTTTTTCCATTAGTTCTTGTGGGTAAAAAGATAAGAACTTCCATTCATACATTTTTCA
TCTCTTCTCGCTTCTTACTTACAGCTAATAATACCATCCAATCATATTTTCTTTTCTTTT
TCCAGCTAGTGTTTTTGGTACGGAAATTGATTGTTTACTTGCTTTGCAGTCACTGCTTGC
AGCTCTTGGATCAATTCAGTTTGTTTCCAACATTGCTTTTGCCTACTTTGTGTTGAACAA
GACTATTTCAGTGAAGTATGTATGTTTCTGACTTTCTCGTAGCTGGAATAAAAATCAGAA
TTACATGGAATCATGTGATTAATGAAGATTTTGCTCCTCTTTCCAGAGTCATGGTAGCCA
CAACGTTTATTGTCTTTGGCAACATCTTCTTAGTATCCTTCGGCAACCATCAATCGCCTG
TTTACACGCCGGAGCAGCTGATCGCAAAATACAGCAATTTGGTGTTTGTTCTTTATTGCA
TGTCATTGGTCTTTGTTGTTGCGTTTAACCATTATCTCTACAGGAGTGGAGAAACTATTA
TTTCAAATAGTTCAAAAGATGCTGGCACATATTGGCGAACAATGTTGCCATTTTCATATG
CTGTTGTATCTGGTGCTATTGGATCTTGCTCAGTCTTGTTTGCAAAATCATTGTCTAACA
TGCTGAGACTGACGATGAGCAGCAGATACGAGTTCCATAGCTGGTTCACATATTCGATCG
TTCTCCTGTTTCTGTGTACTGCTGGATTTTGGATGGCAAGACTGAATGAGGGGCTGTCAT
TATTTGATGCAATACTGATTGTTCCAATGTTTCAAATTGCTTGGACCTTCTTCTCTATTT
GTACAGGATTTGTTTACTTTCAAGAATATCAAGTATTTGATACGCTCAGGATAATTATGT
TTGTGTTAGGCATGACATTTGTCTTTGTTGGGATTTCCTTGCTAGCACCCGATGACAGTA
AAGCTGATACGAAAGATGGTTCAAGCACCGCCGATGACTCCATAATTGACATAGACAGAA
ATGGAAAGATGCCGATGGAGGAGACAGACACAGATGATAGCATCTCCTTTGTTACTTCTG
TAAAAGTAAATGCAAAACGTGTACTTTCAAAGGCAAAGTCTGCATGCTCCATGTCCCTTG
GCCTTGGGGAGAGCACCATAAGCGCTTCATCGGTGCTTGCCATGCCGATGGTCTCGTCAA
GAACAACCGGCTTCAGAGGAATCGGAAATGACCGTCCAAAGTATGTCCCTTTAAGAACCA
CAGATTGGAGTAACCTATAGCCGGTGGTAATATATAGGTACACAGGAAATGTCTTTGTTT
TTGATGTTGCCTAGCGGATGGCAGTGAAGTTTTTTTTGTTGCTTCCAGAGGCAACTGTTT
GTTGTGATCGTAGCTAGCTATAACACGAGTGTATAGTTCACCGTTGTACCCTACAAAACA
CTGTCCATACCTAGCTGCATATACACGTGTAAGTTTTAGAATACAACTCAAATGATTCGA
TTCGCCTCTGAATTGC