Plant GARDEN
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d016602_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:5:169615711:169625655:-1 gene:Zm00001d016602 gene_biotype:protein_coding transcript_biotype:protein_coding description:RING/U-box superfamily protein
Sequence

ATGTCCATCTCTCCACACGAACGCACCGGAGGAGCCTATTACCCGCGCCCGCACAACCCT
AGCCCTAGTCCCCAACATGGCAGCGACAGACGCCGCCACGGCCGCCGCTCCCCTCCGGCA
TCCGTCTCGCCACCCGGCGCCGCTGCGGAAGCTAGCGACGGCGGGGTCGGCTCGAGCTCC
AACCCAGTGGTTCCAGCTATTGGAGAATCTATTAATGCTCCCGAAAAGGTAGTTGGATTT
ATAATATCTGGGGAAGAGAATGATACATGTACACAAGAGGTTGGCAATGTTTCAGAATGC
CACTCTTCAGAACAGGGGGATTCCGGTTTGCCTGTAGATAATTTTGGCTCAGTTGGGTCA
TATCCTGAGAGACCTAAAATGGTGGGATCCCTTCAGGCTGACCATTTGGCTTCAGGTTCT
ACTGGACTGGGTAATGGGACTCAGATAGCTGCCAGGAAGAATCAGACCGTGAATGCTAAT
CACCTACTGAATTTCCAGTATGATCCTATTTCTCGGCCACAGCCCAGAGGCCCTAGAACA
TATCTTCCGAGAAGACAAAGGAAGATAAAACCTTACAACAAGGATCTGTTCATCCAAGCA
AACTATAAGTTTGTTGTATTGGATACTGGGAATTACCAGATTGATTCAATGGATCCTGAT
AAGATGCTTCAGTGGGAAGATATTATCTGTGTAAGATACTATAGCCCTTCTGAGGTACAA
TGCCCTATTTGCTTGGAAAGACCATTGTGCCCACAGATCACATCATGCGGACACATATAT
TGCTTTCCATGCATTTTACGTTATCTAATGATGGGCAAAGATGATTATAGAGGTGAGTGT
TGGAAGAAGTGTCCTCTGTGTTTCATGATGATATCATCAAAGGATTTGTATACAATACAA
ATTACTCAAGTCCAGAATGTCCGTGCTGGTGACGTTGTCACATTTACACTTCTGAGCAGG
TCAAGAAATTCGCTCACTCCTTCCATCAAAAGCTCCTCCAGTGAAAGTTCTACAACAGAT
GAAGAGCATTATAATGTTTTCTCAAAGTTTATTTTGACATCTGATGTGGAGTTGTCTGTT
CGAGATGCAAAATTGGATCTTAGTAATTGGTTGCATATGGCTGACTTAGGCCTTGTTGAT
GACTTGGAGAAACTTCCATTTGTTTCTGCTGCTTTGGAGCAACTGGAAGAGAAGACGAAA
TATTGGATTGATTACAGAAATTATGGTGGTAGTCCTCCATCAAAAGATAGCTTCTCTCCT
GGATCTAGTTTCAAGTCTAGGAACTCTTTTGATGTGAATACTTCTCAGCAGATGAGTGAG
CACAAGATCTCTCTTTCAGATAGAGATATGGTCAATGGTATTTCAGAACTCTCCATGTCT
CCCGAGTTGAGTAAAACCTCTGGTAAAGGAACAATATCTAAAGTAAATGAGAAATGTACC
ACAACCATTGATTCAAATGAACATGACCCATACACATTTTACCAGGTGTCAGATGGCCAA
CACCTAATTCTCCATCCACTAAACATGAGATGTCTTCTAAACCATTTTGGAGGTTCTGAT
ATGCTTCCACCTAGAATAACTGCCAAAATATTGGAGCTGGAAACTGTAACACAGTCTGAG
GCTATAAGGAAGCGCTATCGGTTTTTGAGTCACTTCTCATTAACAACTACATTTCAGTTC
TGTGAAATTGACTTGAGTGATGTAGTGTCTCCTAACTCACTGGCTCCATTCTTGGATGAA
ATCAAGAAGCGTGAGAAACAAAGAAAACGAGCCGCCAAGAAGGAAGAAAGTGAGAGAGTG
AAGGCGGAAGTTGCTGCTGCTGTTCAGGCATCAGCTATGCGATTTGAGTATACAAATTCC
TCTCAAAGTCACAACGATGTCATGTTCTCTCTGGATGACTTTGAAGCCCTGGGAAACAAC
GCTGGGCCGTCCACCAGTCCACCAGCGAGTGAAAGGAAGCTTTTCTCTGATGTAACACGC
TTGGGTTTTGCATCTGCTCAAGACTCACCTCCCTTAAGACTCGGAACTGGGGATGCAAAT
GGCCAAAGTGAAACCTCGAGAGACCAAGGGCCGTTAGCGACACCCGCATTATCATTTGCC
AGCATCATATCTTCCAGTAGAGCCGTGACTGCAGCTGACAACTCGGAGATGCAGAAAGCA
AATGGCGCTGGGAAGAAGGGTAAGAAAGCAACTAGAGTGCTTTTGTCGACTGGTGGTGGC
CGTCGATACTGA

Peptide Sequence

PEP ID

Zm00001d016602_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:5:169615711:169625655:-1 gene:Zm00001d016602 transcript:Zm00001d016602_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:RING/U-box superfamily protein
Sequence

MSISPHERTGGAYYPRPHNPSPSPQHGSDRRRHGRRSPPASVSPPGAAAEASDGGVGSSS
NPVVPAIGESINAPEKVVGFIISGEENDTCTQEVGNVSECHSSEQGDSGLPVDNFGSVGS
YPERPKMVGSLQADHLASGSTGLGNGTQIAARKNQTVNANHLLNFQYDPISRPQPRGPRT
YLPRRQRKIKPYNKDLFIQANYKFVVLDTGNYQIDSMDPDKMLQWEDIICVRYYSPSEVQ
CPICLERPLCPQITSCGHIYCFPCILRYLMMGKDDYRGECWKKCPLCFMMISSKDLYTIQ
ITQVQNVRAGDVVTFTLLSRSRNSLTPSIKSSSSESSTTDEEHYNVFSKFILTSDVELSV
RDAKLDLSNWLHMADLGLVDDLEKLPFVSAALEQLEEKTKYWIDYRNYGGSPPSKDSFSP
GSSFKSRNSFDVNTSQQMSEHKISLSDRDMVNGISELSMSPELSKTSGKGTISKVNEKCT
TTIDSNEHDPYTFYQVSDGQHLILHPLNMRCLLNHFGGSDMLPPRITAKILELETVTQSE
AIRKRYRFLSHFSLTTTFQFCEIDLSDVVSPNSLAPFLDEIKKREKQRKRAAKKEESERV
KAEVAAAVQASAMRFEYTNSSQSHNDVMFSLDDFEALGNNAGPSTSPPASERKLFSDVTR
LGFASAQDSPPLRLGTGDANGQSETSRDQGPLATPALSFASIISSSRAVTAADNSEMQKA
NGAGKKGKKATRVLLSTGGGRRY

Transcript Sequence

Transcript ID

Zm00001d016602_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:169615711:169625655:-1 gene:Zm00001d016602 gene_biotype:protein_coding transcript_biotype:protein_coding description:RING/U-box superfamily protein
Sequence

GCCGCGCATTTTTTCTTCGCCCGTTATCATCCTACACGTGGGTTGGTCTACGTGAGCCCG
GCCTTGCCTGCCCATCGCCACGCCAACCGGCGATCCTACCACGCATCGACCGTATTAACC
CCACGCCACCCTGTCCCTTTCCCCGCGCCACCGCCCTCTCCGTCGCCGCCGTTCGACCGA
GCGCCGCTCACCCACCCCACGAGCTCCCGCGCGGGTTCATGTCCATCTCTCCACACGAAC
GCACCGGAGGAGCCTATTACCCGCGCCCGCACAACCCTAGCCCTAGTCCCCAACATGGCA
GCGACAGACGCCGCCACGGCCGCCGCTCCCCTCCGGCATCCGTCTCGCCACCCGGCGCCG
CTGCGGAAGCTAGCGACGGCGGGGTCGGCTCGAGCTCCAACCCAGTGGTTCCAGCTATTG
GAGAATCTATTAATGCTCCCGAAAAGGTAGTTGGATTTATAATATCTGGGGAAGAGAATG
ATACATGTACACAAGAGGTTGGCAATGTTTCAGAATGCCACTCTTCAGAACAGGGGGATT
CCGGTTTGCCTGTAGATAATTTTGGCTCAGTTGGGTCATATCCTGAGAGACCTAAAATGG
TGGGATCCCTTCAGGCTGACCATTTGGCTTCAGGTTCTACTGGACTGGGTAATGGGACTC
AGATAGCTGCCAGGAAGAATCAGACCGTGAATGCTAATCACCTACTGAATTTCCAGTATG
ATCCTATTTCTCGGCCACAGCCCAGAGGCCCTAGAACATATCTTCCGAGAAGACAAAGGA
AGATAAAACCTTACAACAAGGATCTGTTCATCCAAGCAAACTATAAGTTTGTTGTATTGG
ATACTGGGAATTACCAGATTGATTCAATGGATCCTGATAAGATGCTTCAGTGGGAAGATA
TTATCTGTGTAAGATACTATAGCCCTTCTGAGGTACAATGCCCTATTTGCTTGGAAAGAC
CATTGTGCCCACAGATCACATCATGCGGACACATATATTGCTTTCCATGCATTTTACGTT
ATCTAATGATGGGCAAAGATGATTATAGAGGTGAGTGTTGGAAGAAGTGTCCTCTGTGTT
TCATGATGATATCATCAAAGGATTTGTATACAATACAAATTACTCAAGTCCAGAATGTCC
GTGCTGGTGACGTTGTCACATTTACACTTCTGAGCAGGTCAAGAAATTCGCTCACTCCTT
CCATCAAAAGCTCCTCCAGTGAAAGTTCTACAACAGATGAAGAGCATTATAATGTTTTCT
CAAAGTTTATTTTGACATCTGATGTGGAGTTGTCTGTTCGAGATGCAAAATTGGATCTTA
GTAATTGGTTGCATATGGCTGACTTAGGCCTTGTTGATGACTTGGAGAAACTTCCATTTG
TTTCTGCTGCTTTGGAGCAACTGGAAGAGAAGACGAAATATTGGATTGATTACAGAAATT
ATGGTGGTAGTCCTCCATCAAAAGATAGCTTCTCTCCTGGATCTAGTTTCAAGTCTAGGA
ACTCTTTTGATGTGAATACTTCTCAGCAGATGAGTGAGCACAAGATCTCTCTTTCAGATA
GAGATATGGTCAATGGTATTTCAGAACTCTCCATGTCTCCCGAGTTGAGTAAAACCTCTG
GTAAAGGAACAATATCTAAAGTAAATGAGAAATGTACCACAACCATTGATTCAAATGAAC
ATGACCCATACACATTTTACCAGGTGTCAGATGGCCAACACCTAATTCTCCATCCACTAA
ACATGAGATGTCTTCTAAACCATTTTGGAGGTTCTGATATGCTTCCACCTAGAATAACTG
CCAAAATATTGGAGCTGGAAACTGTAACACAGTCTGAGGCTATAAGGAAGCGCTATCGGT
TTTTGAGTCACTTCTCATTAACAACTACATTTCAGTTCTGTGAAATTGACTTGAGTGATG
TAGTGTCTCCTAACTCACTGGCTCCATTCTTGGATGAAATCAAGAAGCGTGAGAAACAAA
GAAAACGAGCCGCCAAGAAGGAAGAAAGTGAGAGAGTGAAGGCGGAAGTTGCTGCTGCTG
TTCAGGCATCAGCTATGCGATTTGAGTATACAAATTCCTCTCAAAGTCACAACGATGTCA
TGTTCTCTCTGGATGACTTTGAAGCCCTGGGAAACAACGCTGGGCCGTCCACCAGTCCAC
CAGCGAGTGAAAGGAAGCTTTTCTCTGATGTAACACGCTTGGGTTTTGCATCTGCTCAAG
ACTCACCTCCCTTAAGACTCGGAACTGGGGATGCAAATGGCCAAAGTGAAACCTCGAGAG
ACCAAGGGCCGTTAGCGACACCCGCATTATCATTTGCCAGCATCATATCTTCCAGTAGAG
CCGTGACTGCAGCTGACAACTCGGAGATGCAGAAAGCAAATGGCGCTGGGAAGAAGGGTA
AGAAAGCAACTAGAGTGCTTTTGTCGACTGGTGGTGGCCGTCGATACTGAAGGACTATAG
ATGCATTGGAACGAACAGTTTGGTTGTTTCCATATAATGCCGTAGCTCAATGCAATGTGC
ATAGTACATAACCTGGCTGGGATACGCTTGTAAGTTGTAACACTGAGCGGCAGTCGTGTG
TGTTTTGCCTTTCTTGTGGGTGTGCTTGCGTTGTGCCCACATCCTGTCCCTTGCATGATC
TGGAAACGAGCGCAGAGAAGCGTGTACCATAACTAATAAAGGTGGCGCAACACTTTAGTT
GTGGAACGCCGCTAGTCTGCCCGGAGTG