Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d016586_T002
CDS Infomation	cds chromosome:B73_RefGen_v4:5:168555943:168561196:1 gene:Zm00001d016586 gene_biotype:protein_coding transcript_biotype:protein_coding description:hydroxyproline-rich glycoprotein family protein
Sequence	ATGAAGTCGCCGCTGCGGAGGTTCAGGGGCTTCGGCCACCACCACACCAAGGAGGAGCGG AGGGGCCACCACCAGCCGCCGCCGGCCAAGCTCGACGAGCTCGTCTGCGCCGCCCAGGAG GTGGAGGACATGAGAGACTGCTACGATGGCTTGATTGCAGCTGCGGCCGCCACAACAAAT AGTGTATATGAGTTTTCCGAGGCTCTTGAGGAACTGGGAGGCTGCTTCCTCGCAAAAACT GCACTAAATGGCGATGACGATGATGATAGCGGTAGTAGAGTGCTCATGAAGCTGGGGAAG GCCCAATTTGAATTACAAAAACTTGTTGATACCTATCGCTCAAATATCATTTATACTATC ACAACCCCATCAGAGTCTCTTCTCAAGGAGCTACAGACTGTCGAGGAAATGAAGCAGCAA TGCGACATGAAAAGAGAGACATATGAAGCTATGAGGGCATCCTATACACAAAAAGGAAGG TCAAGGCATTCCAAAACTGAAACATACTCTGCAGAACAACTGCAAAGCGCTCTCGCTGAG TACCAAGAAGACGCAGCGCTGTTCATATTTCGCTTAAAGTCATTGAGGCAAGGGCAATTC CATAGCCTTTTAACACAGGCTTCTCGGCATCATGCCGCTCAGTTAAGCTTTTTCAGGAGA GGGTTGAACTGTCTTGAGGCACTCGAACCTCATGTAAAGGCAATAGCTGAGAAACAGCAC ATCGACTACCAGTTCAGTGGTCTTGAGGATGATGCATCTGACAACGATGATTACAGCTCC TACCAGGATGATTGCAGTGACGATGGAGAGCTCAGTTTCGACTATGAAATAAACGACAAG GATCAATATTTTGTTGCTTCAAGTGGTTCAATGGATTTAGACAAAAGAGATGTGACGAAT TCCCCGCAGCCAGTAAAAGAAAGCATGCAGGAAGGGGTCAAACAAACCAAGGGAAATGTT ATAACTCCGCGAGTGAAGCCAGAGATCAACACACACTCAGCACCCATTCTGGCAGGCAAC TTACCGGATCCGTCCGAGAGATCTTGGCAAACGAAGCCATCTTCAGCCAAACTTTCGTAC AAGCTTCCAATGCCAGTTGATGACAAGGATCCCAGATCTGCAGGTGCTCAGAGACCACAT CATTCACAGCAGCTGGAGAGTAAGCCTCGTGTCTCAGCGAATCCGTGGCATTCGTCTCCA CTGACGAAAGACTTCAGGCCGGGTGGCCACGTGAAAACGCCACCAAGTGCGGAGGGGGCC TCGGCGTTCTCCCAGCCGGTCTCTGATTTCAAGAAGATGAAGAGGCAGTTCTATTCTGGT CCAATGGCAAGCGGACCAGGGTTAAGCATGCCATCTTCGCTGAACGATCGCAGATCATCC GCGGCACAAGCACAGCATCTTGTGATGCCAGGAAATTTGCAAGGCCTCTTCTGGCAGCCG TCATCTGCGTCCCCAAAAGTTCCCCCCAAGATGTTGGGGCGGCATCCAACGAAATCACCA AGGATCAGCGAGCTGCACGAGCTGCCTAGGCCTCCTCCAGCCAGCGTGGAGTCCCTCAGG CCTTCTGGTTTGGTCGGCTACTCTGGTCCTCTGGTATCCAAGCGTCAGACTCAGATCCCT GCAGCCACAGCCCGTGTGTCGCCGACAGCGTCACGAACCCCCTCGCCGCTTCCACCGCCG CCTGCTACCCTGACTCGCAGCTACTCCATACCATCAAATAGCCAGAGGATACCGATCGTC ACCGCGGACAGATTGTTGGAGGCTAGAAATAGCAGGGACGGCAGCGATATTTATTCGCCG CCACTTACCCCTTTGTCACTGACTGATTTGTCCCAGCAGCAAGGAACGAAAACTACTGCA GGTGGCACAAGGATGAAGGGGGCCTTATGA

Peptide Sequence

PEP ID	Zm00001d016586_P002
PEP Infomation	pep chromosome:B73_RefGen_v4:5:168555943:168561196:1 gene:Zm00001d016586 transcript:Zm00001d016586_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:hydroxyproline-rich glycoprotein family protein
Sequence	MKSPLRRFRGFGHHHTKEERRGHHQPPPAKLDELVCAAQEVEDMRDCYDGLIAAAAATTN SVYEFSEALEELGGCFLAKTALNGDDDDDSGSRVLMKLGKAQFELQKLVDTYRSNIIYTI TTPSESLLKELQTVEEMKQQCDMKRETYEAMRASYTQKGRSRHSKTETYSAEQLQSALAE YQEDAALFIFRLKSLRQGQFHSLLTQASRHHAAQLSFFRRGLNCLEALEPHVKAIAEKQH IDYQFSGLEDDASDNDDYSSYQDDCSDDGELSFDYEINDKDQYFVASSGSMDLDKRDVTN SPQPVKESMQEGVKQTKGNVITPRVKPEINTHSAPILAGNLPDPSERSWQTKPSSAKLSY KLPMPVDDKDPRSAGAQRPHHSQQLESKPRVSANPWHSSPLTKDFRPGGHVKTPPSAEGA SAFSQPVSDFKKMKRQFYSGPMASGPGLSMPSSLNDRRSSAAQAQHLVMPGNLQGLFWQP SSASPKVPPKMLGRHPTKSPRISELHELPRPPPASVESLRPSGLVGYSGPLVSKRQTQIP AATARVSPTASRTPSPLPPPPATLTRSYSIPSNSQRIPIVTADRLLEARNSRDGSDIYSP PLTPLSLTDLSQQQGTKTTAGGTRMKGAL

Transcript Sequence

Transcript ID	Zm00001d016586_T002
Transcript Infomation	cdna chromosome:B73_RefGen_v4:5:168555943:168561196:1 gene:Zm00001d016586 gene_biotype:protein_coding transcript_biotype:protein_coding description:hydroxyproline-rich glycoprotein family protein
Sequence	AGGAAGAGGGTGCGGGCGTGCAGCAGAAGCAAGGGCGCTTTCCACATCCACAGCTAGCCT CTTGCGCTTACGGAAAGATCAGAGGGGCAGGGGCGGAGCGTCTGTTGCAAGGACGCGCAC GAGACTCGTAAGGGAGAAACCAAACAACGGAGGGGATCGATGAAGTCGCCGCTGCGGAGG TTCAGGGGCTTCGGCCACCACCACACCAAGGAGGAGCGGAGGGGCCACCACCAGCCGCCG CCGGCCAAGCTCGACGAGCTCGTCTGCGCCGCCCAGGAGGTGGAGGACATGAGAGACTGC TACGATGGCTTGATTGCAGCTGCGGCCGCCACAACAAATAGTGTATATGAGTTTTCCGAG GCTCTTGAGGAACTGGGAGGCTGCTTCCTCGCAAAAACTGCACTAAATGGCGATGACGAT GATGATAGCGGTAGTAGAGTGCTCATGAAGCTGGGGAAGGCCCAATTTGAATTACAAAAA CTTGTTGATACCTATCGCTCAAATATCATTTATACTATCACAACCCCATCAGAGTCTCTT CTCAAGGAGCTACAGACTGTCGAGGAAATGAAGCAGCAATGCGACATGAAAAGAGAGACA TATGAAGCTATGAGGGCATCCTATACACAAAAAGGAAGGTCAAGGCATTCCAAAACTGAA ACATACTCTGCAGAACAACTGCAAAGCGCTCTCGCTGAGTACCAAGAAGACGCAGCGCTG TTCATATTTCGCTTAAAGTCATTGAGGCAAGGGCAATTCCATAGCCTTTTAACACAGGCT TCTCGGCATCATGCCGCTCAGTTAAGCTTTTTCAGGAGAGGGTTGAACTGTCTTGAGGCA CTCGAACCTCATGTAAAGGCAATAGCTGAGAAACAGCACATCGACTACCAGTTCAGTGGT CTTGAGGATGATGCATCTGACAACGATGATTACAGCTCCTACCAGGATGATTGCAGTGAC GATGGAGAGCTCAGTTTCGACTATGAAATAAACGACAAGGATCAATATTTTGTTGCTTCA AGTGGTTCAATGGATTTAGACAAAAGAGATGTGACGAATTCCCCGCAGCCAGTAAAAGAA AGCATGCAGGAAGGGGTCAAACAAACCAAGGGAAATGTTATAACTCCGCGAGTGAAGCCA GAGATCAACACACACTCAGCACCCATTCTGGCAGGCAACTTACCGGATCCGTCCGAGAGA TCTTGGCAAACGAAGCCATCTTCAGCCAAACTTTCGTACAAGCTTCCAATGCCAGTTGAT GACAAGGATCCCAGATCTGCAGGTGCTCAGAGACCACATCATTCACAGCAGCTGGAGAGT AAGCCTCGTGTCTCAGCGAATCCGTGGCATTCGTCTCCACTGACGAAAGACTTCAGGCCG GGTGGCCACGTGAAAACGCCACCAAGTGCGGAGGGGGCCTCGGCGTTCTCCCAGCCGGTC TCTGATTTCAAGAAGATGAAGAGGCAGTTCTATTCTGGTCCAATGGCAAGCGGACCAGGG TTAAGCATGCCATCTTCGCTGAACGATCGCAGATCATCCGCGGCACAAGCACAGCATCTT GTGATGCCAGGAAATTTGCAAGGCCTCTTCTGGCAGCCGTCATCTGCGTCCCCAAAAGTT CCCCCCAAGATGTTGGGGCGGCATCCAACGAAATCACCAAGGATCAGCGAGCTGCACGAG CTGCCTAGGCCTCCTCCAGCCAGCGTGGAGTCCCTCAGGCCTTCTGGTTTGGTCGGCTAC TCTGGTCCTCTGGTATCCAAGCGTCAGACTCAGATCCCTGCAGCCACAGCCCGTGTGTCG CCGACAGCGTCACGAACCCCCTCGCCGCTTCCACCGCCGCCTGCTACCCTGACTCGCAGC TACTCCATACCATCAAATAGCCAGAGGATACCGATCGTCACCGCGGACAGATTGTTGGAG GCTAGAAATAGCAGGGACGGCAGCGATATTTATTCGCCGCCACTTACCCCTTTGTCACTG ACTGATTTGTCCCAGCAGCAAGGAACGAAAACTACTGCAGGTGGCACAAGGATGAAGGGG GCCTTATGACATAAATCAACCAAATGCAGACTGATCTTAGTTGATTTTGTAAGTAGTGAT GTATTTTAGGTTCATATTCATGATATTCTTTTATTCATCGTCTGTATTACAAATGAAAAG GACGGAAAAGTAATATATACTTTTCTTACACAGTAGTGATGTATTGTAGGTTCATATTCA TTATATATTGTTTCATTCACCGTATGTATTACAAATGAAAAGGGCGGAAAAGTGCAAGAA CATTGAACCTCTGGTTCAGATCTCTGATAGCGTCAAGATGAAAGGGCTGTTTCCTCAGTT CCGTTTTGTTTCGTTTTTGGATGAATTTTCCATTTCTTGACACTACATGATTTCGTTCCA GATTGTATGGGTGGAGAGAAATGAAACCCTGTACAAAATTAATGATGCGTGCTCGTAATG TATGCTGTCCTTGCTATTCTGTCTCGAGAAAAATATGATGTTCCGTCCCTCTTGAATAAA AAAACAAAAAT