Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d016446_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:5:162603198:162606546:-1 gene:Zm00001d016446 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:cysteine protease1 description:Cysteine proteinase 1

Sequence

ATGGCTCATCGCGTTCTCCTCCTCCTCTCTCTCGCGTCGGCCGCCGCGGTTGCCGCCGCC
GTCGACGCGGAGGACCCGCTGATCCGGCAGGTGGTTCCCGGTGGAGATGACAACGATCTG
GAGCTGAACGCGGAGTCCCACTTCCTGAGCTTCGTGCAGCGGTTCGGCAAGTCCTACAAG
GACGCCGACGAGCACGCGTACCGGCTGTCCGTTTTCAAGGCCAACCTGCGCCGCGCGCGC
CGGCACCAGCTGCTGGACCCGTCGGCGGAGCACGGCGTCACTAAGTTCTCCGACCTCACG
CCGGCAGAGTTCCGCCGGACCTACCTCGGCCTCCGCAAGTCCCGGCGCGCTCTCCTCAGA
GAACTCGGGGAGTCGGCGCACGAGGCGCCCGTGCTCCCCACCGATGGTCTCCCCGACGAT
TTCGACTGGAGGGACCACGGCGCCGTCGGCCCCGTCAAGAACCAGGGTTCGTGCGGGTCG
TGCTGGTCGTTCAGCGCGTCTGGAGCGCTGGAGGGTGCGCACTACCTCGCAACTGGCAAG
CTGGAGGTGCTTTCGGAGCAGCAGTTCGTCGACTGTGACCACGAGTGTGATTCATCGGAG
CCTGATTCATGTGATTCGGGTTGCAATGGTGGGCTAATGACGACGGCATTCAGTTATCTC
CAGAAGGCCGGTGGCCTTGAGAGTGAGAAGGATTACCCTTACACTGGGAGTGATGGCAAA
TGCAAGTTTGACAAGTCCAAGATTGTTGCTTCAGTTCAGAACTTCAGTGTTGTGTCTGTG
GACGAGGCTCAAATTTCTGCTAACCTCATCAAACATGGGCCATTGGCAATCGGCATCAAT
GCTGCCTACATGCAGACATACATCGGAGGCGTGTCATGCCCATACATCTGTGGCAGGCAC
CTTGACCATGGTGTTCTCCTTGTTGGATATGGTGCTTCTGGTTTCGCCCCCATTCGCCTG
AAGGACAAGCCTTACTGGATCATCAAGAACTCGTGGGGCGAGAACTGGGGGGAGAACGGA
TACTACAAGATATGCAGGGGTTCCAACGTTCGCAACAAGTGCGGCGTCGATTCCATGGTC
TCTACCGTGTCCGCAGTCCACGCCTCGAAGGAGTAG

Peptide Sequence

PEP ID

Zm00001d016446_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:5:162603198:162606546:-1 gene:Zm00001d016446 transcript:Zm00001d016446_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:cysteine protease1 description:Cysteine proteinase 1

Sequence

MAHRVLLLLSLASAAAVAAAVDAEDPLIRQVVPGGDDNDLELNAESHFLSFVQRFGKSYK
DADEHAYRLSVFKANLRRARRHQLLDPSAEHGVTKFSDLTPAEFRRTYLGLRKSRRALLR
ELGESAHEAPVLPTDGLPDDFDWRDHGAVGPVKNQGSCGSCWSFSASGALEGAHYLATGK
LEVLSEQQFVDCDHECDSSEPDSCDSGCNGGLMTTAFSYLQKAGGLESEKDYPYTGSDGK
CKFDKSKIVASVQNFSVVSVDEAQISANLIKHGPLAIGINAAYMQTYIGGVSCPYICGRH
LDHGVLLVGYGASGFAPIRLKDKPYWIIKNSWGENWGENGYYKICRGSNVRNKCGVDSMV
STVSAVHASKE

Transcript Sequence

Transcript ID

Zm00001d016446_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:162603198:162606546:-1 gene:Zm00001d016446 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:cysteine protease1 description:Cysteine proteinase 1

Sequence

ACCGAAACCAAGCAACCCAATCCAAACCAGACAAGCAAGGAATCCCCCGATGGCTCATCG
CGTTCTCCTCCTCCTCTCTCTCGCGTCGGCCGCCGCGGTTGCCGCCGCCGTCGACGCGGA
GGACCCGCTGATCCGGCAGGTGGTTCCCGGTGGAGATGACAACGATCTGGAGCTGAACGC
GGAGTCCCACTTCCTGAGCTTCGTGCAGCGGTTCGGCAAGTCCTACAAGGACGCCGACGA
GCACGCGTACCGGCTGTCCGTTTTCAAGGCCAACCTGCGCCGCGCGCGCCGGCACCAGCT
GCTGGACCCGTCGGCGGAGCACGGCGTCACTAAGTTCTCCGACCTCACGCCGGCAGAGTT
CCGCCGGACCTACCTCGGCCTCCGCAAGTCCCGGCGCGCTCTCCTCAGAGAACTCGGGGA
GTCGGCGCACGAGGCGCCCGTGCTCCCCACCGATGGTCTCCCCGACGATTTCGACTGGAG
GGACCACGGCGCCGTCGGCCCCGTCAAGAACCAGGGTTCGTGCGGGTCGTGCTGGTCGTT
CAGCGCGTCTGGAGCGCTGGAGGGTGCGCACTACCTCGCAACTGGCAAGCTGGAGGTGCT
TTCGGAGCAGCAGTTCGTCGACTGTGACCACGAGTGTGATTCATCGGAGCCTGATTCATG
TGATTCGGGTTGCAATGGTGGGCTAATGACGACGGCATTCAGTTATCTCCAGAAGGCCGG
TGGCCTTGAGAGTGAGAAGGATTACCCTTACACTGGGAGTGATGGCAAATGCAAGTTTGA
CAAGTCCAAGATTGTTGCTTCAGTTCAGAACTTCAGTGTTGTGTCTGTGGACGAGGCTCA
AATTTCTGCTAACCTCATCAAACATGGGCCATTGGCAATCGGCATCAATGCTGCCTACAT
GCAGACATACATCGGAGGCGTGTCATGCCCATACATCTGTGGCAGGCACCTTGACCATGG
TGTTCTCCTTGTTGGATATGGTGCTTCTGGTTTCGCCCCCATTCGCCTGAAGGACAAGCC
TTACTGGATCATCAAGAACTCGTGGGGCGAGAACTGGGGGGAGAACGGATACTACAAGAT
ATGCAGGGGTTCCAACGTTCGCAACAAGTGCGGCGTCGATTCCATGGTCTCTACCGTGTC
CGCAGTCCACGCCTCGAAGGAGTAGACTCTGGTCAGCGGTGATAATCGTGATTCCATATA
TTGTAGAACTATAATCCCTGCTAGTAATCCATTTGTGCTGTTTATGTATCGAAGGCAGCA
AAGATGTGTGAAGCGGCAATGGGATGCTTGCTGTAAGGTAATATGTTTGGCTTGCTAGGC
ATGCTACACGCTATTTGGATGTAGCAACGTTATCACCAGCTGTATACGCTTTTTAATCGA
CAACATTTGAATAATATGTACATAACATTATGTTGTGCTC