Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d016407_T007
CDS Infomation	cds chromosome:B73_RefGen_v4:5:161270036:161275948:-1 gene:Zm00001d016407 gene_biotype:protein_coding transcript_biotype:protein_coding description:SPOC domain / Transcription elongation factor S-II protein
Sequence	ATGGAGTTTTCAAAGCAAGGGCAGGCACCCGTGCCAAACAACATCGGATCACAACCGCTG CCCTCTTCAAATGTCCAATCTAATCAAACAGAGCGTCCATCAATGTTTTATCCATCATCA TTGCCTGGTGACTGGAGTTCGCAGCAGATGTTCTCCATGGGAACCTCAGTACCAGTTAGC TCATATTGTATTGTCCCCATGAATCAGCAACCAGTCCAGCTAGGTGCTTCCAGGCCAGAG ATTTCACGTCCTTTGGGGCCACAACCTTTGCTAAGTAGGGTATCATTGAGGCCACCCCAG CAGGTGCTAAATATTCATACATCTTTGCCAGGAATGGCTGGATCGCAACACTCACCATCT ATGGCAGGCAGGAGATCACAACAGACAATTGGTTCTCCAAAGGTTCAAATGCTGAAATCT CCATCATTCCAGTCATCTAATAAGCGATCTGCACAGAAGGAGCCACCGTCAAAGGTTCAG CATCAGCAACTTGAATCTGTGAGGTCCAAGTTCAGGGAGTCACTTGTTGCTGCCCTGAGT TTGGATTCTGATCAGCAGAATAAGATTCAGTCTGATAATGTGCAGTCTGCTGGGTCTATA GATAATTTCAAACCAGGAGCAGGAGATGCGGTACAGGATTTAGTGGCAACCACATCAAAA GATGTGTGCACAACCAATTCAGGTGTAGACACAACTGTAGCTCCCAGTAGATGTGAGGAA AATGAGAAGTTAAGCAGTGATTTAGCTTTAGAGATGACCACAAGCATAAATGATGGCATG CAGCAACAGTCAATTCAGGTTTCCTCAGAAGATGACTTATTGGGTCAGTGTATGGTTGCA GATGAACTTTTGCAAGGTCATGGGCTTAGTTGGGTTTCTGATCTTGATGCTGGGATTTCT GAACTTAACGCAGAACCTAATGCTCTAAAAAGGCCGCGGACTTCTAATGTGGAGTCTGAG TCAAAAAGAATAAAGTCTGCCAATGAGTTAGCAATGGAGAAGGAGAAATTTAATCAAAGA GCTGAAATTCTGGCGTTTAGAATTGAAGAGGAGCTGTTCAAGTTGTTTGGTGGAGTAAAT AAGAAGTACAAGGAAAAGGGCAGATCTCTTCTGTTTAATTTGAAAGACAAAAGCAACCCT GAGTTAAGAGAGAGGGTCTTGTCTGGAGATATTGTGCCTGAACGACTTTGTTCAATGACT GCAGAAGAACTTGCCTCCAAAGAACTCTCAGAGTGGCGGCTGGCTAAAGCTGAGGAGTTT GCACAGATGGTTGTCCTTCCGACTATGGAGGTTGACCCTAGGCGTTTGGTTAGAAAAACT CACAAAGGAGAGTTCCAAGTTGAAGTTGAAGAGCCAGATGGTTTCTCAGTGGAGGTTGAA CTTGGGAGTAATGTTACTAATATTCCATCAAAAGCTGTTGAAGATCAGACAAAGTCTAAT GGAACAGCTGGTAAAGTAGATGTTCAAGAAAAGGACAAAGCATCTGATAGCGCTTCACAC GATGAGGATGGCAGAACAGGCAACAATGGTATACCAGGTGATGTAGAATGTATCGATAAT GAGAAAGCTGATCTCATGCAGGAACTTATCTTGGATGATGTGAAGGACACTGTAAACCTC CCACCAATTCCTTCGTTAGATGAATTCATGCAGGGCTTAGATTCTGAGCCACCTTTTGTT GATATCTCAGTTGGGACTCCTCAAGAAGATGTCAATGACTCTGACGAACTTGACACCACC ATGGAGCCTTCGGATCTTCCAGAGACAGAAGATAATGCATCTGCACCAGAAAAAACTGAA TCTAAATCTGATAAGTCATCTGCACAGGTTAACAGCGAGCACAGGTTAGAGTCACCAGGA CATATAGCGGTTCAAAATTCGGATCTTACTGAACCACGTGATGGAGAGCTGAGCAAATCC TCCCCATCCCCTGACAAAGATGAAGCAAAGAAAACAACTGTTGATAATGCCTCTAATTCC GATTCTGTTCATCACAATCAGGCAGCCAGTCTCCCTATGATACGTGAGAGCATTTGGGAG GGTGCAATTCAGCTGACCGTATCTTCGCTCTGTAATGTTGTTGCTATTTTCAAAAGTGGT GAAAAGCCGTCATTAAAAGATTGGCGTAGCTTTATTGAGATAAAGGGAAGAGTTAAACTT AGTGCTTTTCAAGAGTTTGTCGATCAGCTTCCCAAATCTAAAAGCCGCGCTATAATGGTA TTTCTTTTTCTTGCTGTAGTCTGTTTATGTATTCCCTTCATAACGGAGCTGTGTTGGAAG GAGGGTTCATCGGAAAGTGGCCGCCAAAATATCTTGCAGGTTACATTCTACCTTTTGCCT CTCACTACTGTTGGAGCAATCTTAATAGGATATAGAGGATTGGGTATACTAAATTTGGTT CTTGTTGTGCAGACTATCGATGCATATATTTCAGATGAGAGAGTAGGATTAGCTGAGCCT GCAGAAGGAATAGAGCTGTACCTGTGCCCTCCTCATGGGAAAACCGTGGAAATCCTCTCA CGGCACTTGCCAAAGGAGCACCAAGAGAGCCTTGCTGTGGCGGGATCATCCTTCATCGGA GTTGTGGTATGGCGGAGGCCCAGCATTTCCAGGGCACCCACCTCCCACCACAACAACAGG CATGATGGTTCCAAGAGGCAGTCGATCCTAGGGAAACCACAGGTTACAAATCCGGCCGCA AGGCCCTCCCTACCTCCCAACTCATACGGCGCACCACCAGGCTTTACCAGCCAGCGCGAA GAGGAAGATGTAACTGATGACGCCCCTCCAGGCTTTGGACCCGGTGTTGCTAGGGATGAG GATGATCTTCCTGAATTTAATTTTGTTAAATCGTCACACCATGCCGCAAATGTAACTGCG CATGCATACAAGGGCCCGTGGCCACATGTACCACCACCCTCTGCTCGCCCAGCAGAGCAA ATGAGGGAACTGGTTCAGAAGTATGGTAAAAGATCATCTGTTCAAGAAGCCCCCCGTGCC TGGGATGACGACGACGATGACATACCGGAGTGGAACCCCACCCACCAGACGATTAAGCAG CCTCCACTGCCGCACGCCCCACAGCAACTGCCGTTGCCTCCGCCTCCCGTCCAGCAGATG AACGCCGCCTACCAGCAGCAGTACCACATCCCAAGTGCTGTGCAGCCTCAGGTTCCCATC ACTTCGCTTCCCCATGCCTATCTCCGGACCCAGCAGCCTCAGCCTGGGCAGGCATGGCAG CAGCCGAGCAATGCTTGGTGGCCAGCGCAGGGCGTTGCTGCCCCTGCCGCACAGCAACCC CAGTATGGGGTAGTGCCTGGCAGCAGTGGCGTCCAGGGCTACGACTCTAGCAACGCGGGT GGTATGGCATGGAGGCCGAGATAG

Peptide Sequence

PEP ID	Zm00001d016407_P007
PEP Infomation	pep chromosome:B73_RefGen_v4:5:161270036:161275948:-1 gene:Zm00001d016407 transcript:Zm00001d016407_T007 gene_biotype:protein_coding transcript_biotype:protein_coding description:SPOC domain / Transcription elongation factor S-II protein
Sequence	MEFSKQGQAPVPNNIGSQPLPSSNVQSNQTERPSMFYPSSLPGDWSSQQMFSMGTSVPVS SYCIVPMNQQPVQLGASRPEISRPLGPQPLLSRVSLRPPQQVLNIHTSLPGMAGSQHSPS MAGRRSQQTIGSPKVQMLKSPSFQSSNKRSAQKEPPSKVQHQQLESVRSKFRESLVAALS LDSDQQNKIQSDNVQSAGSIDNFKPGAGDAVQDLVATTSKDVCTTNSGVDTTVAPSRCEE NEKLSSDLALEMTTSINDGMQQQSIQVSSEDDLLGQCMVADELLQGHGLSWVSDLDAGIS ELNAEPNALKRPRTSNVESESKRIKSANELAMEKEKFNQRAEILAFRIEEELFKLFGGVN KKYKEKGRSLLFNLKDKSNPELRERVLSGDIVPERLCSMTAEELASKELSEWRLAKAEEF AQMVVLPTMEVDPRRLVRKTHKGEFQVEVEEPDGFSVEVELGSNVTNIPSKAVEDQTKSN GTAGKVDVQEKDKASDSASHDEDGRTGNNGIPGDVECIDNEKADLMQELILDDVKDTVNL PPIPSLDEFMQGLDSEPPFVDISVGTPQEDVNDSDELDTTMEPSDLPETEDNASAPEKTE SKSDKSSAQVNSEHRLESPGHIAVQNSDLTEPRDGELSKSSPSPDKDEAKKTTVDNASNS DSVHHNQAASLPMIRESIWEGAIQLTVSSLCNVVAIFKSGEKPSLKDWRSFIEIKGRVKL SAFQEFVDQLPKSKSRAIMVFLFLAVVCLCIPFITELCWKEGSSESGRQNILQVTFYLLP LTTVGAILIGYRGLGILNLVLVVQTIDAYISDERVGLAEPAEGIELYLCPPHGKTVEILS RHLPKEHQESLAVAGSSFIGVVVWRRPSISRAPTSHHNNRHDGSKRQSILGKPQVTNPAA RPSLPPNSYGAPPGFTSQREEEDVTDDAPPGFGPGVARDEDDLPEFNFVKSSHHAANVTA HAYKGPWPHVPPPSARPAEQMRELVQKYGKRSSVQEAPRAWDDDDDDIPEWNPTHQTIKQ PPLPHAPQQLPLPPPPVQQMNAAYQQQYHIPSAVQPQVPITSLPHAYLRTQQPQPGQAWQ QPSNAWWPAQGVAAPAAQQPQYGVVPGSSGVQGYDSSNAGGMAWRPR

Transcript Sequence

Transcript ID	Zm00001d016407_T007
Transcript Infomation	cdna chromosome:B73_RefGen_v4:5:161270036:161275948:-1 gene:Zm00001d016407 gene_biotype:protein_coding transcript_biotype:protein_coding description:SPOC domain / Transcription elongation factor S-II protein
Sequence	CTGTTTGCGCGCAGCACCTAGCAGGATGCGGATGCACAGACCTGCTCGCGCGTCTCATCC GCACGCACGCACCCACCCACAAGCAAATGGAAAAATAAAATCAACGAGACCTGCTCTCAC ATCGCTAACCCTAAACCCCCAAATCGCCCACCTTCCGATCGCCATCTTCGCCGCCGCCGC CACCACCACGGGGCTTACCGGCTGGTGCCGCTGAGCGCTGTGCTCGCCGCGGGCCACCGC CCAGCCCCACGGCTTCCCTCGAGATATCTGCATTTGAAGTTGCAGTAAACAACACTGCTA TTTGTGCCAAGAATTTTGGGAGTTATTGGCATAATGGAGTTTTCAAAGCAAGGGCAGGCA CCCGTGCCAAACAACATCGGATCACAACCGCTGCCCTCTTCAAATGTCCAATCTAATCAA ACAGAGCGTCCATCAATGTTTTATCCATCATCATTGCCTGGTGACTGGAGTTCGCAGCAG ATGTTCTCCATGGGAACCTCAGTACCAGTTAGCTCATATTGTATTGTCCCCATGAATCAG CAACCAGTCCAGCTAGGTGCTTCCAGGCCAGAGATTTCACGTCCTTTGGGGCCACAACCT TTGCTAAGTAGGGTATCATTGAGGCCACCCCAGCAGGTGCTAAATATTCATACATCTTTG CCAGGAATGGCTGGATCGCAACACTCACCATCTATGGCAGGCAGGAGATCACAACAGACA ATTGGTTCTCCAAAGGTTCAAATGCTGAAATCTCCATCATTCCAGTCATCTAATAAGCGA TCTGCACAGAAGGAGCCACCGTCAAAGGTTCAGCATCAGCAACTTGAATCTGTGAGGTCC AAGTTCAGGGAGTCACTTGTTGCTGCCCTGAGTTTGGATTCTGATCAGCAGAATAAGATT CAGTCTGATAATGTGCAGTCTGCTGGGTCTATAGATAATTTCAAACCAGGAGCAGGAGAT GCGGTACAGGATTTAGTGGCAACCACATCAAAAGATGTGTGCACAACCAATTCAGGTGTA GACACAACTGTAGCTCCCAGTAGATGTGAGGAAAATGAGAAGTTAAGCAGTGATTTAGCT TTAGAGATGACCACAAGCATAAATGATGGCATGCAGCAACAGTCAATTCAGGTTTCCTCA GAAGATGACTTATTGGGTCAGTGTATGGTTGCAGATGAACTTTTGCAAGGTCATGGGCTT AGTTGGGTTTCTGATCTTGATGCTGGGATTTCTGAACTTAACGCAGAACCTAATGCTCTA AAAAGGCCGCGGACTTCTAATGTGGAGTCTGAGTCAAAAAGAATAAAGTCTGCCAATGAG TTAGCAATGGAGAAGGAGAAATTTAATCAAAGAGCTGAAATTCTGGCGTTTAGAATTGAA GAGGAGCTGTTCAAGTTGTTTGGTGGAGTAAATAAGAAGTACAAGGAAAAGGGCAGATCT CTTCTGTTTAATTTGAAAGACAAAAGCAACCCTGAGTTAAGAGAGAGGGTCTTGTCTGGA GATATTGTGCCTGAACGACTTTGTTCAATGACTGCAGAAGAACTTGCCTCCAAAGAACTC TCAGAGTGGCGGCTGGCTAAAGCTGAGGAGTTTGCACAGATGGTTGTCCTTCCGACTATG GAGGTTGACCCTAGGCGTTTGGTTAGAAAAACTCACAAAGGAGAGTTCCAAGTTGAAGTT GAAGAGCCAGATGGTTTCTCAGTGGAGGTTGAACTTGGGAGTAATGTTACTAATATTCCA TCAAAAGCTGTTGAAGATCAGACAAAGTCTAATGGAACAGCTGGTAAAGTAGATGTTCAA GAAAAGGACAAAGCATCTGATAGCGCTTCACACGATGAGGATGGCAGAACAGGCAACAAT GGTATACCAGGTGATGTAGAATGTATCGATAATGAGAAAGCTGATCTCATGCAGGAACTT ATCTTGGATGATGTGAAGGACACTGTAAACCTCCCACCAATTCCTTCGTTAGATGAATTC ATGCAGGGCTTAGATTCTGAGCCACCTTTTGTTGATATCTCAGTTGGGACTCCTCAAGAA GATGTCAATGACTCTGACGAACTTGACACCACCATGGAGCCTTCGGATCTTCCAGAGACA GAAGATAATGCATCTGCACCAGAAAAAACTGAATCTAAATCTGATAAGTCATCTGCACAG GTTAACAGCGAGCACAGGTTAGAGTCACCAGGACATATAGCGGTTCAAAATTCGGATCTT ACTGAACCACGTGATGGAGAGCTGAGCAAATCCTCCCCATCCCCTGACAAAGATGAAGCA AAGAAAACAACTGTTGATAATGCCTCTAATTCCGATTCTGTTCATCACAATCAGGCAGCC AGTCTCCCTATGATACGTGAGAGCATTTGGGAGGGTGCAATTCAGCTGACCGTATCTTCG CTCTGTAATGTTGTTGCTATTTTCAAAAGTGGTGAAAAGCCGTCATTAAAAGATTGGCGT AGCTTTATTGAGATAAAGGGAAGAGTTAAACTTAGTGCTTTTCAAGAGTTTGTCGATCAG CTTCCCAAATCTAAAAGCCGCGCTATAATGGTATTTCTTTTTCTTGCTGTAGTCTGTTTA TGTATTCCCTTCATAACGGAGCTGTGTTGGAAGGAGGGTTCATCGGAAAGTGGCCGCCAA AATATCTTGCAGGTTACATTCTACCTTTTGCCTCTCACTACTGTTGGAGCAATCTTAATA GGATATAGAGGATTGGGTATACTAAATTTGGTTCTTGTTGTGCAGACTATCGATGCATAT ATTTCAGATGAGAGAGTAGGATTAGCTGAGCCTGCAGAAGGAATAGAGCTGTACCTGTGC CCTCCTCATGGGAAAACCGTGGAAATCCTCTCACGGCACTTGCCAAAGGAGCACCAAGAG AGCCTTGCTGTGGCGGGATCATCCTTCATCGGAGTTGTGGTATGGCGGAGGCCCAGCATT TCCAGGGCACCCACCTCCCACCACAACAACAGGCATGATGGTTCCAAGAGGCAGTCGATC CTAGGGAAACCACAGGTTACAAATCCGGCCGCAAGGCCCTCCCTACCTCCCAACTCATAC GGCGCACCACCAGGCTTTACCAGCCAGCGCGAAGAGGAAGATGTAACTGATGACGCCCCT CCAGGCTTTGGACCCGGTGTTGCTAGGGATGAGGATGATCTTCCTGAATTTAATTTTGTT AAATCGTCACACCATGCCGCAAATGTAACTGCGCATGCATACAAGGGCCCGTGGCCACAT GTACCACCACCCTCTGCTCGCCCAGCAGAGCAAATGAGGGAACTGGTTCAGAAGTATGGT AAAAGATCATCTGTTCAAGAAGCCCCCCGTGCCTGGGATGACGACGACGATGACATACCG GAGTGGAACCCCACCCACCAGACGATTAAGCAGCCTCCACTGCCGCACGCCCCACAGCAA CTGCCGTTGCCTCCGCCTCCCGTCCAGCAGATGAACGCCGCCTACCAGCAGCAGTACCAC ATCCCAAGTGCTGTGCAGCCTCAGGTTCCCATCACTTCGCTTCCCCATGCCTATCTCCGG ACCCAGCAGCCTCAGCCTGGGCAGGCATGGCAGCAGCCGAGCAATGCTTGGTGGCCAGCG CAGGGCGTTGCTGCCCCTGCCGCACAGCAACCCCAGTATGGGGTAGTGCCTGGCAGCAGT GGCGTCCAGGGCTACGACTCTAGCAACGCGGGTGGTATGGCATGGAGGCCGAGATAG