Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d016406_T022
CDS Infomation

cds chromosome:B73_RefGen_v4:5:161251555:161263832:-1 gene:Zm00001d016406 gene_biotype:protein_coding transcript_biotype:protein_coding description:NSP (nuclear shuttle protein)-interacting GTPase
Sequence

ATGGCGAGCCGGGTCAAGGAGGACGAGAGGCACGAGAAGATCCTTCGCGGCCTGCTCAAG
CTGCCCGCCAACAAGCGCTGCATCAACTGTAACAATTTGGGACCACAATATGCCTGCACA
AATTTCTGGACCTTCGTTTGTACCAATTGCAGTGGAGCACATCGGGAGTTCACGCATCGA
GTAAAATCGGTTTCCATGGCCAAATTTACTGCACAAGAAGTTACTGCCCTTCAAGAAGGG
GGGAATGAGCGTGCTAGAGAAGTATTTTTCAAGGAGTGGGATCCTCAACGAAATGGATAC
CCTGACAGCAGTAATGCTGACAAATTGAGAAATTTCATTAAGCATGTGTATGTGGAACGG
AGATACACAGGAGAAAGAAGTACTGATAAGCCACCAAGGGCAAAGGATGACAAGGATGAG
TATAGTGAAAATAGGAGATCTGATGGAAATTGGGGTGGTTCAAGAAGTCCGCCAGATGGA
AGTTACTCTGATCGTCGGAGTTATAGTGGACGGAGTGATGACAGAAATTCCAGATATTCC
TATGGGGACCGTAGTCCTGGCTATGACCAAAATGACTATAAGAAAAGTCCTCGCTACTTT
GAGGTTGTCGATGATAGATCTGGAAAAACAACTCCAGTTCAAAGGTTTGAAGACCGTTGG
TCTTCGGAGCCCAGAAAACCAGATAGTGGATCTCCAGATTTCCAGAAAGAAGCTGATGGT
TCTAGTCCTGTTGTACGACCAGTTAGGGATATATTGGGTGACAATACTCCTCAACTTCGG
GTTGGTGAACCGTCAAAGCCAGCTACTGAACCTCCAAAGCCAAGCGTAGTCAGACCAATT
GATCCTCCAAAGCCGAGTGTAGTCAGACCAATTGGTCCTCCAAAGCCAAATGGAACCAGG
GCAATTGATCCTCCACCACTGACAAAGACAATATCTAGTGCCAGCAGCATTGGTTCTTCA
GAAGGCACATCAGAACAGACAAAGGTGGCAAGTGCTGTAAGTTTAATTGATTTTAGTGCA
GATCCTGAACCTGCGTCCACAGCACCACCACAACCCACCCCTATGCCACAACAACCTCCA
TTTAACGCAGCAGCACCACAGCCTATTCTTGAACAAGGGAAAAGTGATCCTTCTGTCAGT
GGTGGTGACTGGGCATCTTTTGATTCTTTTGGCCAACAACAAACACCACAAACAAGCAGC
AGTGTAAATCCTCTTGAGTCTGCACTTGCACAGCTGTCATTCTCTGAAGCACCCTCTGCA
CCAAATGCGTCAGCTTATCCTGTTTCTCTTGATCCCACTTTGAAAGCAAATGATGGAGGA
CATTCATCTGTGCTAGACCAGTCACATTCCTTGTTTGATGCGCCCTTTGGAATCTCAGGC
AACCAGGCCTCAACAGTAATGTCCGGCCAAGGATCATCAGTTCAACAATCTCCTCTAGCT
GCCCCAACAGCTGGACCTCCATCTCAAGCTACTGCAAATCCACAAGGAACCAGTGGTATT
CAAGGAGCAGCCTCTTCTACTGACAGTAAATTCAGTAGCAGGAAAGAACTTCCAGTGGAT
ATCTTTACTGCACTATATCCACCATCAACTCAAATGATGCCTGGCTGGCAGAGAGCTCCC
CATTTTGGAATGGGATACGCCATGCAATATCCACCTGGAGTGGTATCCATGTCATTCTAA

Peptide Sequence

PEP ID

Zm00001d016406_P022
PEP Infomation

pep chromosome:B73_RefGen_v4:5:161251555:161263832:-1 gene:Zm00001d016406 transcript:Zm00001d016406_T022 gene_biotype:protein_coding transcript_biotype:protein_coding description:NSP (nuclear shuttle protein)-interacting GTPase
Sequence

MASRVKEDERHEKILRGLLKLPANKRCINCNNLGPQYACTNFWTFVCTNCSGAHREFTHR
VKSVSMAKFTAQEVTALQEGGNERAREVFFKEWDPQRNGYPDSSNADKLRNFIKHVYVER
RYTGERSTDKPPRAKDDKDEYSENRRSDGNWGGSRSPPDGSYSDRRSYSGRSDDRNSRYS
YGDRSPGYDQNDYKKSPRYFEVVDDRSGKTTPVQRFEDRWSSEPRKPDSGSPDFQKEADG
SSPVVRPVRDILGDNTPQLRVGEPSKPATEPPKPSVVRPIDPPKPSVVRPIGPPKPNGTR
AIDPPPLTKTISSASSIGSSEGTSEQTKVASAVSLIDFSADPEPASTAPPQPTPMPQQPP
FNAAAPQPILEQGKSDPSVSGGDWASFDSFGQQQTPQTSSSVNPLESALAQLSFSEAPSA
PNASAYPVSLDPTLKANDGGHSSVLDQSHSLFDAPFGISGNQASTVMSGQGSSVQQSPLA
APTAGPPSQATANPQGTSGIQGAASSTDSKFSSRKELPVDIFTALYPPSTQMMPGWQRAP
HFGMGYAMQYPPGVVSMSF

Transcript Sequence

Transcript ID

Zm00001d016406_T022
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:161251555:161263832:-1 gene:Zm00001d016406 gene_biotype:protein_coding transcript_biotype:protein_coding description:NSP (nuclear shuttle protein)-interacting GTPase
Sequence

ACGACGAAAAACTTCTTTTCCCCCTCCCCTGTTAAACACGCGCAGCGAAGCAACGCAGCA
GCAACAAACCTTTTCGCTCGCAGCTGCCACCACCTCGTCGTCTCGCCTCCCCCTCGGCCT
CCGCACGCGCGCGCGGGATCTCGCCCTCGCGCGCACCGAGGAAGGGCGCACCCACCCGCA
GGCTTCCTGGCGGGCCGATACGGCGGCGATGGCGAGCCGGGTCAAGGAGGACGAGAGGCA
CGAGAAGATCCTTCGCGGCCTGCTCAAGCTGCCCGCCAACAAGCGCTGCATCAACTGTAA
CAATTTGGGACCACAATATGCCTGCACAAATTTCTGGACCTTCGTTTGTACCAATTGCAG
TGGAGCACATCGGGAGTTCACGCATCGAGTAAAATCGGTTTCCATGGCCAAATTTACTGC
ACAAGAAGTTACTGCCCTTCAAGAAGGGGGGAATGAGCGTGCTAGAGAAGTATTTTTCAA
GGAGTGGGATCCTCAACGAAATGGATACCCTGACAGCAGTAATGCTGACAAATTGAGAAA
TTTCATTAAGCATGTGTATGTGGAACGGAGATACACAGGAGAAAGAAGTACTGATAAGCC
ACCAAGGGCAAAGGATGACAAGGATGAGTATAGTGAAAATAGGAGATCTGATGGAAATTG
GGGTGGTTCAAGAAGTCCGCCAGATGGAAGTTACTCTGATCGTCGGAGTTATAGTGGACG
GAGTGATGACAGAAATTCCAGATATTCCTATGGGGACCGTAGTCCTGGCTATGACCAAAA
TGACTATAAGAAAAGTCCTCGCTACTTTGAGGTTGTCGATGATAGATCTGGAAAAACAAC
TCCAGTTCAAAGGTTTGAAGACCGTTGGTCTTCGGAGCCCAGAAAACCAGATAGTGGATC
TCCAGATTTCCAGAAAGAAGCTGATGGTTCTAGTCCTGTTGTACGACCAGTTAGGGATAT
ATTGGGTGACAATACTCCTCAACTTCGGGTTGGTGAACCGTCAAAGCCAGCTACTGAACC
TCCAAAGCCAAGCGTAGTCAGACCAATTGATCCTCCAAAGCCGAGTGTAGTCAGACCAAT
TGGTCCTCCAAAGCCAAATGGAACCAGGGCAATTGATCCTCCACCACTGACAAAGACAAT
ATCTAGTGCCAGCAGCATTGGTTCTTCAGAAGGCACATCAGAACAGACAAAGGTGGCAAG
TGCTGTAAGTTTAATTGATTTTAGTGCAGATCCTGAACCTGCGTCCACAGCACCACCACA
ACCCACCCCTATGCCACAACAACCTCCATTTAACGCAGCAGCACCACAGCCTATTCTTGA
ACAAGGGAAAAGTGATCCTTCTGTCAGTGGTGGTGACTGGGCATCTTTTGATTCTTTTGG
CCAACAACAAACACCACAAACAAGCAGCAGTGTAAATCCTCTTGAGTCTGCACTTGCACA
GCTGTCATTCTCTGAAGCACCCTCTGCACCAAATGCGTCAGCTTATCCTGTTTCTCTTGA
TCCCACTTTGAAAGCAAATGATGGAGGACATTCATCTGTGCTAGACCAGTCACATTCCTT
GTTTGATGCGCCCTTTGGAATCTCAGGCAACCAGGCCTCAACAGTAATGTCCGGCCAAGG
ATCATCAGTTCAACAATCTCCTCTAGCTGCCCCAACAGCTGGACCTCCATCTCAAGCTAC
TGCAAATCCACAAGGAACCAGTGGTATTCAAGGAGCAGCCTCTTCTACTGACAGTAAATT
CAGTAGCAGGAAAGAACTTCCAGTGGATATCTTTACTGCACTATATCCACCATCAACTCA
AATGATGCCTGGCTGGCAGAGAGCTCCCCATTTTGGAATGGGATACGCCATGCAATATCC
ACCTGGAGTGGTATCCATGTCATTCTAAGCATTTCCTCAGCCTACATATCAGCAACCTGT
ATATTCACAACATGCATATTCCCACCCCCAACCTGTGAAAGCTTCAAACCCTTTTGATCT
TGGGAATGAGTCAGCTCATATTCAAGCTCACATGCCCCCATCTGGGCCACCTGGAGCATC
AGCAGGCTCAGCTCCCCAAACCTTAATTGGTAACTCTAGTTTTGGTGTTCCTCCACAGCA
GCCTCACCAGCTCTATCAGTCAGAAGCGCATCTAAGCCATTTTATGATGCAGCAAGTTCC
GAACAGCATGCCCATGCCTGAACAACAACCTAATAGCATGCTTGCAACG