Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d016119_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:5:145523324:145525028:1 gene:Zm00001d016119 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:NAC-transcription factor 19 description:Protein SOMBRERO
Sequence

ATGCATCCGAGCTGCTCTCCACTGGCAGTGCCTCCGGGCTTCCGGTTCCACCCGACAGAC
GAGGAGCTCCTCTACTACTACCTGAGGAAGAAGGTTGCCTATGAGCCCATAGATCTTGAT
GTCATAAGGGAGGTGGACCTCAACAAGCTTGAACCATGGGACCTCAAAGATCGGTGCAGG
ATTGGGACGGCGGAGCCTCAGGACGAGTGGTATTTCTTCAGCCACAAGGACAGGAAGTAC
CCTACGGGGACGCGAACCAACCGGGCGACGACGGCTGGGTTCTGGAAGGCGACCGGACGG
GACAAGGCCATCTTCCTCGGCAACGCTGGGAGGAGGATCGGCCTGAGGAAGACGCTGGTG
TTTTACACTGGCAGGGCACCCCATGGCAAGAAGACGGACTGGATCATGCACGAGTACCGC
CTCAACGATGACAACGTCGAGGTGCCGCCGATTACGGAGGATGGATGGGTGGTGTGTAGG
GTTTTCAAGAAAAAGAGCATCCAGAGGGGATTCGACCAGCTGGGCACAGCGTCGGCTGGC
GACGACGACGAACTCCAATCCTTCCACTCCCCGGGCGGCGTGATGACCACTCTGGCGGAG
CAGAAGCACGGCCTCCTCCACCAGCTCACGCACGGCGGAGTCGTCGTTCCCGCCTTCGAC
CCCTGCATGAACCTTCCACACCTCACGAGTGCGGAAGGGCAGCTTGCCGCCACGGCAGCA
TTTACATCCGGCACATCGGCTGTGGCCATGAACCTGCTCGACATGGGTCGTTGTTCTCGC
CACAACCACAACCACAACATGCTGAAGATGACAACAACACCATGTGGCTCTGCCAGTGAC
ATGCCGCTGAACAGCGGTGAGCGCTTCGGTGCCGCCGCCGATTGGTCGATCCTCGACAAG
CTGCTGGCGTCACACCAGAATCTTGACCAACTCTTCCATTGCAAGTTCGGGGGAACAACC
TTCGCGGTGCCTCACCATTATCAGCAGGAGATGCAGCAGCAGCACATGGAAATCAGCGCG
TCTTCACTGCATAGGCTGCCTCTACATTAG

Peptide Sequence

PEP ID

Zm00001d016119_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:5:145523324:145525028:1 gene:Zm00001d016119 transcript:Zm00001d016119_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:NAC-transcription factor 19 description:Protein SOMBRERO
Sequence

MHPSCSPLAVPPGFRFHPTDEELLYYYLRKKVAYEPIDLDVIREVDLNKLEPWDLKDRCR
IGTAEPQDEWYFFSHKDRKYPTGTRTNRATTAGFWKATGRDKAIFLGNAGRRIGLRKTLV
FYTGRAPHGKKTDWIMHEYRLNDDNVEVPPITEDGWVVCRVFKKKSIQRGFDQLGTASAG
DDDELQSFHSPGGVMTTLAEQKHGLLHQLTHGGVVVPAFDPCMNLPHLTSAEGQLAATAA
FTSGTSAVAMNLLDMGRCSRHNHNHNMLKMTTTPCGSASDMPLNSGERFGAAADWSILDK
LLASHQNLDQLFHCKFGGTTFAVPHHYQQEMQQQHMEISASSLHRLPLH

Transcript Sequence

Transcript ID

Zm00001d016119_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:145523324:145525028:1 gene:Zm00001d016119 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:NAC-transcription factor 19 description:Protein SOMBRERO
Sequence

TATATGTAACTTCATTCTTGCAACATCACAAGCACACAGGCTTTCACACCCATCTTGCAT
TGGCTCTCCGGCTGCTGTTCTTGCTTCCTCGCTGCACACAACCAAGCAAAGTCACTTTTC
CAAGGTAAAGAAGCATGCATCCGAGCTGCTCTCCACTGGCAGTGCCTCCGGGCTTCCGGT
TCCACCCGACAGACGAGGAGCTCCTCTACTACTACCTGAGGAAGAAGGTTGCCTATGAGC
CCATAGATCTTGATGTCATAAGGGAGGTGGACCTCAACAAGCTTGAACCATGGGACCTCA
AAGATCGGTGCAGGATTGGGACGGCGGAGCCTCAGGACGAGTGGTATTTCTTCAGCCACA
AGGACAGGAAGTACCCTACGGGGACGCGAACCAACCGGGCGACGACGGCTGGGTTCTGGA
AGGCGACCGGACGGGACAAGGCCATCTTCCTCGGCAACGCTGGGAGGAGGATCGGCCTGA
GGAAGACGCTGGTGTTTTACACTGGCAGGGCACCCCATGGCAAGAAGACGGACTGGATCA
TGCACGAGTACCGCCTCAACGATGACAACGTCGAGGTGCCGCCGATTACGGAGGATGGAT
GGGTGGTGTGTAGGGTTTTCAAGAAAAAGAGCATCCAGAGGGGATTCGACCAGCTGGGCA
CAGCGTCGGCTGGCGACGACGACGAACTCCAATCCTTCCACTCCCCGGGCGGCGTGATGA
CCACTCTGGCGGAGCAGAAGCACGGCCTCCTCCACCAGCTCACGCACGGCGGAGTCGTCG
TTCCCGCCTTCGACCCCTGCATGAACCTTCCACACCTCACGAGTGCGGAAGGGCAGCTTG
CCGCCACGGCAGCATTTACATCCGGCACATCGGCTGTGGCCATGAACCTGCTCGACATGG
GTCGTTGTTCTCGCCACAACCACAACCACAACATGCTGAAGATGACAACAACACCATGTG
GCTCTGCCAGTGACATGCCGCTGAACAGCGGTGAGCGCTTCGGTGCCGCCGCCGATTGGT
CGATCCTCGACAAGCTGCTGGCGTCACACCAGAATCTTGACCAACTCTTCCATTGCAAGT
TCGGGGGAACAACCTTCGCGGTGCCTCACCATTATCAGCAGGAGATGCAGCAGCAGCACA
TGGAAATCAGCGCGTCTTCACTGCATAGGCTGCCTCTACATTAGCTTATTGGACGTCAAA
ATGATGATATCATAAGATCTCCCTCAAGTTTTCCATGTAGCTTTGATTGAACGATATGGA
GGTTTAATCGTATCTGTCCTTGTAGATCTCCTCAAGTTCGTGGAGTTCCTTCTATTTTAC
AAGGACCAGATACCGCTATATTGTTAGAATTATTGGG