Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d016008_T027
CDS Infomation

cds chromosome:B73_RefGen_v4:5:139150007:139156003:1 gene:Zm00001d016008 gene_biotype:protein_coding transcript_biotype:protein_coding description:VHS and GAT domain protein

Sequence

ATGCAGCGTGTTCTGGCAAAACATGATGCTATTGATGCAGGTCTAGCAGTTCGAGTGGAG
AAGCCGAAATCTCTGCAGTCCCAAATTGGAAGTTCTTCAACAAGAAAGCCAGATACCATG
GAAGAAACAATTCAGAGGCCTTCAGCAAGTACAACTGCCACCAGTCAGTCTCCCTTTGGG
ATTTTAGCACTTCCTGCACCTCCATCCAGTAGTTCAAAAGCACCTGCAATACCTGCTTCT
AGTATCGACCTACTTAGTGGAGATGATTATGTCAAACCCGAACCTGCAAACTCCCTAGCA
CTTGTTCCTGTCACTGAATATTCAGCTGCAGACAAGAATGTCTTAGCTTTTGCTGATATG
TTTGAACAAAATACAGCCAACAATAGCAACCATAACCTTCCATATTCTTTTCTATCTTCG
ACTTCAAATTCTACTATCTCTACATCACAAACATATCATGCACCGGTGCGACCTGTATTG
CCTCAGCATTCAGCTGCTTATCCAAATGGGGCCAGATCCAATGCCATTGTACCTTATGAT
CAGCAGGCCCAATCGAACTCTACAGGTTCGCGGAATGGGCAAACAGCCTATGGAGGAAAT
CACCAAAAGCAAGCACTAAATTATGGCACAGGTGATCAAAATGGAGACATTCCACCAGCA
CCATGGGGAACTAAGAGATCCACTAACCCATTTGACGACGATCAGCTTGGTGGAATGGCA
GTGCAACCAAAAGGCATGCAACCCCAACCAGTGCAACCCAGTCAGCATGGGAACAAATTC
ATGTCAGCACCACCAATGCCGAGGGGACAGCCAGGAAGAATGCAGTTGCAACAGGTGCCT
GGTGCTCAGCTTGGCGCTCTACAACCAACACAGGCTACACTGAACATGCAGTACAGGGGC
ATGCATCCATCGATGCAAATGAATCATGGAATGGGCATGTATTCCCAACCAACGTTCGGA
GGATATTATGGAATGAACCAAACACAGCTTTACGGCGTTCATATGTCTGGTTATGGATAT
GGTCAGCAATCTGGGGGCTACTATATTCCGAATGCTGCATATGCCTATACTAGTGCAAAC
GAACTTGCCCAGAGGATGAATGACCTTTCAGTTCAAAACGGTGATCCAAATGGAGCCGCA
GCAAATAAGCAGAGCAGACCTGAGGATGCACTCTTTGGTGATCTCTTGAGCATCGCCAAG
ATGAAGCAAAACAAACCTGCAGCTGGCAAGGTTGGCGGCTAA

Peptide Sequence

PEP ID

Zm00001d016008_P027
PEP Infomation

pep chromosome:B73_RefGen_v4:5:139150007:139156003:1 gene:Zm00001d016008 transcript:Zm00001d016008_T027 gene_biotype:protein_coding transcript_biotype:protein_coding description:VHS and GAT domain protein

Sequence

MQRVLAKHDAIDAGLAVRVEKPKSLQSQIGSSSTRKPDTMEETIQRPSASTTATSQSPFG
ILALPAPPSSSSKAPAIPASSIDLLSGDDYVKPEPANSLALVPVTEYSAADKNVLAFADM
FEQNTANNSNHNLPYSFLSSTSNSTISTSQTYHAPVRPVLPQHSAAYPNGARSNAIVPYD
QQAQSNSTGSRNGQTAYGGNHQKQALNYGTGDQNGDIPPAPWGTKRSTNPFDDDQLGGMA
VQPKGMQPQPVQPSQHGNKFMSAPPMPRGQPGRMQLQQVPGAQLGALQPTQATLNMQYRG
MHPSMQMNHGMGMYSQPTFGGYYGMNQTQLYGVHMSGYGYGQQSGGYYIPNAAYAYTSAN
ELAQRMNDLSVQNGDPNGAAANKQSRPEDALFGDLLSIAKMKQNKPAAGKVGG

Transcript Sequence

Transcript ID

Zm00001d016008_T027
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:139150007:139156003:1 gene:Zm00001d016008 gene_biotype:protein_coding transcript_biotype:protein_coding description:VHS and GAT domain protein

Sequence

GACAAGCAAAAGATGTGGTAAAGTCCCTCAAGAAACGCATTGCACACAAGAACCCAAAAG
TCCAACTTCTTGCTCTCACGTTGCTGGAGACGATGATAAAAAATTGTGGGGACGTTGTGC
ATATGGTTGTTGCTGAGAGAGACATACTTCATGAGATGGTCAAGATAGTAAAGAAAAGGC
ATGATTATCATGTTAAAGAGAAGATTCTCACGCTGATAGATACTTGGCAAGAAGTTTTTG
GTGGTGCACGTGCAAGATATCCACAATATTATGCAGCATATGAGGAGCTCTTGCGTGCTG
GAGTGGTATTTCCTCAAAGATTGAATGGTTCTGTGCCAATCATCACTCCTCCACAGACTC
AGCCTCTCCAAAACTATCCCTCATCTTTACACATTTCACAGCAGGAGGAACTTGAATTAC
CAGTTTCAGATTTCCCTGCATTAAGCCTTACAGAAATTCAGAACGCACGTGGCATCATGG
ATGTTCTTTCAGAGATGCTGGATGCTTTAGATCCAGGTAACAGAGAGATTTCAGGGGCTT
AGACAGGATGTCATTGCAGACCTTGTGGATCAATGCCGTTCTTACAAGCAAAGAGTAGTG
CAGCTTGTCAACAGTACCTCGAACGAGGAGTTGCTCAACCAGGGTCTTTCTTTGAATGAT
GATATGCAGCGTGTTCTGGCAAAACATGATGCTATTGATGCAGGTCTAGCAGTTCGAGTG
GAGAAGCCGAAATCTCTGCAGTCCCAAATTGGAAGTTCTTCAACAAGAAAGCCAGATACC
ATGGAAGAAACAATTCAGAGGCCTTCAGCAAGTACAACTGCCACCAGTCAGTCTCCCTTT
GGGATTTTAGCACTTCCTGCACCTCCATCCAGTAGTTCAAAAGCACCTGCAATACCTGCT
TCTAGTATCGACCTACTTAGTGGAGATGATTATGTCAAACCCGAACCTGCAAACTCCCTA
GCACTTGTTCCTGTCACTGAATATTCAGCTGCAGACAAGAATGTCTTAGCTTTTGCTGAT
ATGTTTGAACAAAATACAGCCAACAATAGCAACCATAACCTTCCATATTCTTTTCTATCT
TCGACTTCAAATTCTACTATCTCTACATCACAAACATATCATGCACCGGTGCGACCTGTA
TTGCCTCAGCATTCAGCTGCTTATCCAAATGGGGCCAGATCCAATGCCATTGTACCTTAT
GATCAGCAGGCCCAATCGAACTCTACAGGTTCGCGGAATGGGCAAACAGCCTATGGAGGA
AATCACCAAAAGCAAGCACTAAATTATGGCACAGGTGATCAAAATGGAGACATTCCACCA
GCACCATGGGGAACTAAGAGATCCACTAACCCATTTGACGACGATCAGCTTGGTGGAATG
GCAGTGCAACCAAAAGGCATGCAACCCCAACCAGTGCAACCCAGTCAGCATGGGAACAAA
TTCATGTCAGCACCACCAATGCCGAGGGGACAGCCAGGAAGAATGCAGTTGCAACAGGTG
CCTGGTGCTCAGCTTGGCGCTCTACAACCAACACAGGCTACACTGAACATGCAGTACAGG
GGCATGCATCCATCGATGCAAATGAATCATGGAATGGGCATGTATTCCCAACCAACGTTC
GGAGGATATTATGGAATGAACCAAACACAGCTTTACGGCGTTCATATGTCTGGTTATGGA
TATGGTCAGCAATCTGGGGGCTACTATATTCCGAATGCTGCATATGCCTATACTAGTGCA
AACGAACTTGCCCAGAGGATGAATGACCTTTCAGTTCAAAACGGTGATCCAAATGGAGCC
GCAGCAAATAAGCAGAGCAGACCTGAGGATGCACTCTTTGGTGATCTCTTGAGCATCGCC
AAGATGAAGCAAAACAAACCTGCAGCTGGCAAGGTTGGCGGCTAAGTTTGAGTAAAGAAG
GTACATAATTTTATCTTAATTGCCAGCAGCAGAAACCTTTCCTGACAGCGCATATAATTA
TTTTGCCACGTTCTATGCAATGCCAGATGGCTTCTCGATGTAAGCTCATTTGGTAGAAAT
TCATATTGGGAACTGGAGATTAGGATGCTTGTGGGGAGCCTCATAGCAAATATGTCTATA
ACTCTACTATATATGAAATTCTTGAGTTCTCAGTAGCAATATGTATTGTCATAATTTCCC
TCTGCAAATATTAAGGCAGAATCAGAGATTCCTGTTCTCCCTAGCCATATACCCCTGTTC
TTTTCCACTTATTTCTTCTTCATAACAGTTCTAGTTCAGATTAACTAGTCGGGATAGTAA
TATGTTAGTCAGTACGTTTTTTTAACTACTGTCGATTAGGAAATGATGTTTCAACTTTAT
ATTATTAGACTTTGACAAGCTTTCT