Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d016002_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:5:138880922:138886095:1 gene:Zm00001d016002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Gamma-secretase subunit APH1-like
Sequence

ATGTTAACCTTGGCTTTTATCTTTTTGTGCAGCACCTTATTTTGGCTTATAAGTTTGATA
GTCCTCTCGGGAATATGGAGAGGATTTCTTCCTATAAAGTCAGGAGCTTGGTGGGCATAT
GTGATTCTGATCCTTACATCTGTCGCATTGCAAGAAGGCACTCGTCTTGTGTTTTGGATG
CTTTACAAGAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACGT
CTTAGATTGACTGACAAGATGCTGATTTCTTTAGCTGGTGGTTTAGGCCATGGAGTGGCT
CATGCAGTCTTTTTCTGTCTCAGTCTTTTGACTCCAGCGTTTGGTCGAGCCACATTTTAT
ACTGAAAGGTGCTCAAAGCTGCCATTTTTCCTTACGTCAGCCCTTATTGCACTTGGATTC
TTGGTCATCCATACATTCTCAATGATTATTGCTTTTAATGCATATGACGAGGGAAAGAAA
AGTGATCAAGTCTTTGTTCCAGTAATTCATTTGGCTGCTGCTGCGATGACACTTGTTAAC
CTCGCCCCAGGAGGCTGTCTCATTGGTACCCCGCTGTTGTTGGTCATGGCTGCGCTGACC
TTGCAGCACTGCTGGCGAGTGGCATGCCGGAGATTAACTGAGCACCGGCATCAGCAGCAT
AACAGCAGCTAG

Peptide Sequence

PEP ID

Zm00001d016002_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:5:138880922:138886095:1 gene:Zm00001d016002 transcript:Zm00001d016002_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Gamma-secretase subunit APH1-like
Sequence

MLTLAFIFLCSTLFWLISLIVLSGIWRGFLPIKSGAWWAYVILILTSVALQEGTRLVFWM
LYKKMEEMLDAFADRISKPRLRLTDKMLISLAGGLGHGVAHAVFFCLSLLTPAFGRATFY
TERCSKLPFFLTSALIALGFLVIHTFSMIIAFNAYDEGKKSDQVFVPVIHLAAAAMTLVN
LAPGGCLIGTPLLLVMAALTLQHCWRVACRRLTEHRHQQHNSS

Transcript Sequence

Transcript ID

Zm00001d016002_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:138880922:138886095:1 gene:Zm00001d016002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Gamma-secretase subunit APH1-like
Sequence

AGGCAGTGAACCAAACAAGCCCCTAGTCTTCCCTCCTGCTGGCGGCGTGCGGAGGGCCGG
AGGCCGGGTCGACAAGAGGAGATGACGTTGGCGGCGGGGCTGGGTTACGCCCTGATCGCG
CTGGGCCCCGCCTTCTCCCTCTTCTCCGGCGTCGTCGTCAGGAAGCCCTTCCTCGTCCTC
ACCCTCCTCTCTAGGTCTACCCCTTGCGTCGCCCGTTTCGTGCTTCTTTAGCCACGTTTT
GATCAGATCGTCCGTTGCCCTCTAATAAAAGCGAACATTCAGTTAATCGATTGGCGTAAG
AGGCAGGTGGCGTTTGTTTGAGGCGTTCCAGGGTGTGGTTTCGTGAGGCAAACGCGGATT
ATTGGTTTACTCGCAGTTGTGCTAGGGTTCAGTAGTTTCTTCCGGATCGATACGGATGCT
GCTAGTTGGATTCAGTTCACATGGCGTATTGGCTTGTTCTGTGTAGTTTTTGAGTTGTCA
ATTTATCTCATCTGTTTGCAAAATCTGTAATCTGGTTTAGAATGAATGTGTGGATCTCAG
AGACTCAGACCTGTAGAACTTGCACTGATATGCTACTGATACTCTCCTTAGGTAGTTGGT
AAACCGAAGCTTGCTGACAATTTACTCTATGTCTATTGTCTTGGCAACTTACTCTATGTA
GCTGTGCACCAATGTATTGAAGTTGACTTTTAATTCAGTCCCACAATGGCTCTTTTCTTT
ATTTTTGATTTGTACATTTATTTTTATGAGTATCAACATAAGCATTGAATGCTGTTTAAT
GTATAAGGGGCATATCATGTGCAATCAGATGTATTGGTGCAATCATGCTAAATATTTCTT
GACACCCCTCCCCCCTCTTCCTTTCCAACTGACAATTCATTGCTAGAAAGATGCAAGACA
ATTGGTGATTCGTCATGAAAATGTAAATTGGCATTTCAAATACCTAAGATCAAAGACTGA
GAAAGAACTGGTGTCATCAATTATTTCGTTGGAAGTCAACAAGAAGGATATGAGCTACAG
AAAAAAAAGTTCAGAACCTGACTGAAAGATGCATGTGTTTGTGTGACTTCGTGCAACAAA
CCTGTTTCAGAGCATTTTTCTGATACATTGCTATCTCATATAACTATGACTATGAGTAGT
ATCCTGACATTACACCTCTGGCCTCTGCAAGTACTGAATCTTTGTGTTCTCCAATAGAAT
GCACTGTTAGAAATTACTCCAGAGATATTTGCAATTGAATTTAGTGGATGCATCTATTAT
ACGGAACATATAACCTGGGGTAGGAGAAACTTCTCGAATTATAAGGCTTAAGCTGTCATA
CTTTGGGGTGTGTTTGGTTTTGGGATGAGAGGGATGAAATGGATCCACTCTATTTTTTTG
GGATAGGATGATTCTATCTCGGTGTTTGGTTGGGAGGTCGGGGGCGTCCTTTCTCTGTGT
TTGGTTGGAGGGATGGAATGAAGGGGATAACATCATGTCTGTACACGGTTAGACATCTGT
TAGGTGGCGTTCATCTGCCATCCTCTCTCTGCTGCTGCTTCTTCCTTCAATGCAGTTCAA
ATGCACCATGGCCGAGCTCACACTAGGCTCCGCCCGCGCCATGTGGCTTCCCTCATTGGG
GCTGCCTGTGTAACCGTTGGGGCCGCTAGCGCTGCCGTCAGGGCTGCCCACGCCACCGCC
ATGGCCACCTGCGCCGCCGCTGGGGCTGAGCTCGCTCGTGATGCTGGTGTCGAGCTTGCC
CACCCTTGCCGGGGCCATGTCTTCCCGGACTGAGCTCACCCGCGCCTTGCCCTTGCCATC
TGCGCTGCGTCCGCTGTCCGCCTGCGTCGGAGCCGAGCTCGCTGTGCTCTCTCCATTCTC
CTCTGATGCCAAACACAAATAAAACACTGTCTGGGGGGGGGGGGGGGGGTGGGATGGCTG
CATACCTCAGTTTTTGGGGATGGATGTATCCCTGAATCTAGAGGAATATTTTTCTCTGGG
GACGACTCCAGCCTTGATGTCCCGCTCCAGAACCAAACACTACCTTATTAATCAGTACTC
ACTAGTCATAAATAACTGATGTAACTTTTCTCCATTCATTTTTAATGCTTGAATCTTTAC
ATTTGGTAATTTTGAGTGCTATGCTGTTCTCCTGTGATGACCCTTATCAAGGGAGTGGTA
CACGCAGTCAGGGTTGGTTTGGAAACTTTTATAGTCTTGCCAGTTAAGTTTGGTCTCAAT
CAACAGAGGTTCAAACTTCCAAATGAATCTGCTTAGTTATTTTGTTCGCAGGACAAAAAA
GAATGGATTAGTTTGAAAGAACATATAAGTCAACTTAATCCATGTTAGAGTGAACAGTTT
ACAGACCTGCAAATGGAAACTAGAAACCATTATTCTCTCTATCCATGTTGGCTTCAGACC
TTGATGGTAGTACAGTGAGTTCCCGGTACCCAGCATCACTGCCCTATGTTCTTTAGTGCC
TTAAACACTGAAGTATCTTCTAACGTTCTCCTATGAATTTCAAAATGGAAGGATATATTA
TCATATTTAAATGTTAACCTTGGCTTTTATCTTTTTGTGCAGCACCTTATTTTGGCTTAT
AAGTTTGATAGTCCTCTCGGGAATATGGAGAGGATTTCTTCCTATAAAGTCAGGAGCTTG
GTGGGCATATGTGATTCTGATCCTTACATCTGTCGCATTGCAAGAAGGCACTCGTCTTGT
GTTTTGGATGCTTTACAAGAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATC
TAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAGCTGGTGGTTTAGGCCA
TGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTCTTTTGACTCCAGCGTTTGGTCGAGC
CACATTTTATACTGAAAGGTGCTCAAAGCTGCCATTTTTCCTTACGTCAGCCCTTATTGC
ACTTGGATTCTTGGTCATCCATACATTCTCAATGATTATTGCTTTTAATGCATATGACGA
GGGAAAGAAAAGTGATCAAGTCTTTGTTCCAGTAATTCATTTGGCTGCTGCTGCGATGAC
ACTTGTTAACCTCGCCCCAGGAGGCTGTCTCATTGGTACCCCGCTGTTGTTGGTCATGGC
TGCGCTGACCTTGCAGCACTGCTGGCGAGTGGCATGCCGGAGATTAACTGAGCACCGGCA
TCAGCAGCATAACAGCAGCTAGTTGTAGGCTTGCCATCATGTAATTTTCCCATGTATGTT
TGACTGAATCTTCTGATGTACTATGACAGTAAAAATCAGGTTCTGAGTCGTGTCGTGTAG
TTAGACGAGGGGTTATTATAGTTTGACTCGATGTTTTGCATATGCAGTATGTCCTCCCTT
TCCTGGAGCACTTTTATATCTATCTATCTATATAACCATGATTG