Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d015992_T006
CDS Infomation

cds chromosome:B73_RefGen_v4:5:137795092:137821579:-1 gene:Zm00001d015992 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGATGCTGCAAAGTAAGTTCATTGCGGCAAAGGAAGGGAAGGAACGTGGTTTGATTGAT
GCCCTTTGCTCTCCTGATGAATTGATAAAGACATCACGTCTTTGGGCTCTGGAAATTGCT
AATTGCCGTAAACCTTGGATGAGATCTCTTGGCAGAACAGATAGGCTTGGATCACTATCT
GAAGCTCGTGCTGTATTAAATGCAGCAAGACAGCAAGCAATGAAGGTTGCACCAAACATG
CCACAGCACCAGGCCTGCCTTGATGTAATGGAAGAAGGCATATTATATGGAGGTCAAGCT
GGTGTTTTGAAGGAAGCCAGGGTTTTCAAGGAACTGGTGGTAGCACCAACATCAAAGGCT
CTTGTCCATGTTTTCTTTGCACAACGTTCCACGACAAAGGTGCCAGGTGTAACTGATGTT
CAACTGAAACCAAGGCCAATTAGAAAAGTTGCTGTTATTGGTGGTGGTCTGATGGGCTCT
GGAATTGCTACATCACTTCTTGTTAGCAATATTTCTGTTGTGCTCAAGGAAGTGAACCCT
CAGTTTCTGCAAAGGGGAGAGAAAATGATAGCAGGTAATCTTGAGGGCCTGATAAAAAAA
GGTTCACTAACAAAGGATAGGATGCACAAGGCCATGTCGCTTTTCAAGGGCGCTTTGGAT
TATTCAGATTTCAAGGATGTTGATATGGTTATTGAGGCTGTTATTGAGAAGATTCCTTTG
AAGCAATCGATATTTTCTGACATTGAAAAAATCTGTCCGAAACATTGCATACTTGCGACA
AACACATCCACCATTGATTTGAATGTTGTTGGCGAGAAGACAAATTCTCAAGATAGAATT
ATAGGGGCTCACTTTTTCAGCCCTGCTCATATTATGCCCTTGCTTGAAATTGTCCGGACG
GAGAAGACATCACCACAAGCTATCCTTGATCTCATCACTGTTGGGAAGATAATAAAGAAG
GTCCCTGTTGTGGTCGGCAACTGCACAGGATTTGCAGTCAACCGTACATTTTTTCCTTAC
ACACAGGCTTCTCATCTTCTAGTTAGTCTTGGTATTGATGTTTTCAGAATTGATCGAGTA
ATAAGCAGCTTTGGCATGCCAATGGGACCTTTTCAACTCCAAGATGTGGCTGGGTATGGA
GTGGCTTTGGCAGTAAAAGATATCTACGCTGATGCCTTTGGAGAAAGAAATTTGGGCTCT
AACCTTGTGGGCCTGATGGTAAAGGATGGACGACAAGGAAAGGTGAATGCCAAAGGTTAC
TACATTTATGAGAAGGGTGCGAAGCCAAAGCCAGACCCTAGTGTTAAGCATGTGATCGAG
GAGTACCGAAAGCAGGCAAACACAATGCCTGGTGGAAAGCCTGTTACTTTAATGGATCAA
GATATTTTGGAGATGATTTTCTTCCCAGTTGTGAATGAGGCATGCAGGGTTATGGATGAA
AATGTTGTAATTCGAGCTTCCGATCTTGATATTGCTTCTGTTCTTGGAATGGGCTTTCCC
AAATACAGGGGTGGTCTTGTCTTCTGGGCTGACACTGTTGGAGCGCCTTACATACATTCG
AAGCTAAGCAAGTGGGCCGAAATGTATGGTCCCTTCTTCAAACCTTCATCGTATTTGGAA
CAACGAGCTAAAAGTGGTGTACCATTGAGCGCACCAGGAACATCACAGCAAGGTTCGGCG
AGGTCGCGCATGTGA

Peptide Sequence

PEP ID

Zm00001d015992_P006
PEP Infomation

pep chromosome:B73_RefGen_v4:5:137795092:137821579:-1 gene:Zm00001d015992 transcript:Zm00001d015992_T006 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MMLQSKFIAAKEGKERGLIDALCSPDELIKTSRLWALEIANCRKPWMRSLGRTDRLGSLS
EARAVLNAARQQAMKVAPNMPQHQACLDVMEEGILYGGQAGVLKEARVFKELVVAPTSKA
LVHVFFAQRSTTKVPGVTDVQLKPRPIRKVAVIGGGLMGSGIATSLLVSNISVVLKEVNP
QFLQRGEKMIAGNLEGLIKKGSLTKDRMHKAMSLFKGALDYSDFKDVDMVIEAVIEKIPL
KQSIFSDIEKICPKHCILATNTSTIDLNVVGEKTNSQDRIIGAHFFSPAHIMPLLEIVRT
EKTSPQAILDLITVGKIIKKVPVVVGNCTGFAVNRTFFPYTQASHLLVSLGIDVFRIDRV
ISSFGMPMGPFQLQDVAGYGVALAVKDIYADAFGERNLGSNLVGLMVKDGRQGKVNAKGY
YIYEKGAKPKPDPSVKHVIEEYRKQANTMPGGKPVTLMDQDILEMIFFPVVNEACRVMDE
NVVIRASDLDIASVLGMGFPKYRGGLVFWADTVGAPYIHSKLSKWAEMYGPFFKPSSYLE
QRAKSGVPLSAPGTSQQGSARSRM

Transcript Sequence

Transcript ID

Zm00001d015992_T006
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:137795092:137821579:-1 gene:Zm00001d015992 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

AGGTACTCAGCGTTTGCCGAGGCTTGTAGGTCTACCCAAAGCGATTGAAATGATGCTGCA
AAGTAAGTTCATTGCGGCAAAGGAAGGGAAGGAACGTGGTTTGATTGATGCCCTTTGCTC
TCCTGATGAATTGATAAAGACATCACGTCTTTGGGCTCTGGAAATTGCTAATTGCCGTAA
ACCTTGGATGAGATCTCTTGGCAGAACAGATAGGCTTGGATCACTATCTGAAGCTCGTGC
TGTATTAAATGCAGCAAGACAGCAAGCAATGAAGGTTGCACCAAACATGCCACAGCACCA
GGCCTGCCTTGATGTAATGGAAGAAGGCATATTATATGGAGGTCAAGCTGGTGTTTTGAA
GGAAGCCAGGGTTTTCAAGGAACTGGTGGTAGCACCAACATCAAAGGCTCTTGTCCATGT
TTTCTTTGCACAACGTTCCACGACAAAGGTGCCAGGTGTAACTGATGTTCAACTGAAACC
AAGGCCAATTAGAAAAGTTGCTGTTATTGGTGGTGGTCTGATGGGCTCTGGAATTGCTAC
ATCACTTCTTGTTAGCAATATTTCTGTTGTGCTCAAGGAAGTGAACCCTCAGTTTCTGCA
AAGGGGAGAGAAAATGATAGCAGGTAATCTTGAGGGCCTGATAAAAAAAGGTTCACTAAC
AAAGGATAGGATGCACAAGGCCATGTCGCTTTTCAAGGGCGCTTTGGATTATTCAGATTT
CAAGGATGTTGATATGGTTATTGAGGCTGTTATTGAGAAGATTCCTTTGAAGCAATCGAT
ATTTTCTGACATTGAAAAAATCTGTCCGAAACATTGCATACTTGCGACAAACACATCCAC
CATTGATTTGAATGTTGTTGGCGAGAAGACAAATTCTCAAGATAGAATTATAGGGGCTCA
CTTTTTCAGCCCTGCTCATATTATGCCCTTGCTTGAAATTGTCCGGACGGAGAAGACATC
ACCACAAGCTATCCTTGATCTCATCACTGTTGGGAAGATAATAAAGAAGGTCCCTGTTGT
GGTCGGCAACTGCACAGGATTTGCAGTCAACCGTACATTTTTTCCTTACACACAGGCTTC
TCATCTTCTAGTTAGTCTTGGTATTGATGTTTTCAGAATTGATCGAGTAATAAGCAGCTT
TGGCATGCCAATGGGACCTTTTCAACTCCAAGATGTGGCTGGGTATGGAGTGGCTTTGGC
AGTAAAAGATATCTACGCTGATGCCTTTGGAGAAAGAAATTTGGGCTCTAACCTTGTGGG
CCTGATGGTAAAGGATGGACGACAAGGAAAGGTGAATGCCAAAGGTTACTACATTTATGA
GAAGGGTGCGAAGCCAAAGCCAGACCCTAGTGTTAAGCATGTGATCGAGGAGTACCGAAA
GCAGGCAAACACAATGCCTGGTGGAAAGCCTGTTACTTTAATGGATCAAGATATTTTGGA
GATGATTTTCTTCCCAGTTGTGAATGAGGCATGCAGGGTTATGGATGAAAATGTTGTAAT
TCGAGCTTCCGATCTTGATATTGCTTCTGTTCTTGGAATGGGCTTTCCCAAATACAGGGG
TGGTCTTGTCTTCTGGGCTGACACTGTTGGAGCGCCTTACATACATTCGAAGCTAAGCAA
GTGGGCCGAAATGTATGGTCCCTTCTTCAAACCTTCATCGTATTTGGAACAACGAGCTAA
AAGTGGTGTACCATTGAGCGCACCAGGAACATCACAGCAAGGTTCGGCGAGGTCGCGCAT
GTGAGGTGCTGTCCAGCATTGGGAAGAAGAATTCAGAATACTTGCGGCCGGGATGAGCCA
TAGACGGCTGCTTCGCAGATCAAAAACACCTCCTTGAATACAAATAGGAGGCACAGAAAT
GATGAAAAATAAATGGTTTTGCATAGCTGTAACAGTTTTGGTGCCTTGAACTGTAACTAT
GGCAGAGTTTCTGTGAACAGAGTGGCATGCATTAATTATACTTGACCACTCTATATGTCG
CTGTTTGTATAATTTTCAATACGTACAAGAACTAAAATATAT