Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d015985_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:5:136805753:136822192:1 gene:Zm00001d015985 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:sucrose export defective1 description:Probable tocopherol cyclase%2C chloroplastic

Sequence

ATGAACCTCGCCGTCGCAGCCGCACTGCCGTCCGTGACGCCACGTACCGGCGTCGTGCTC
CCACGGAGCAGTCGCCGACACTGCCCCCGCGGGGTCGTCCCACGCGCGGCCTCGAGCTCC
GTTTCCTCCTTTACCTCCCCCTCAGCAGCGGCGGCGCCCATCTACACGCCCACGCCGCAG
GACCGGTCTCTCCGGACGCCGCATAGCGGGTACCACTTTGATGGCACGGCTCGACCTTTC
TTTGAAGGATGGTACTTCAAGGTGTCGATTCCAGAGTGCAGGCAGAGTTTCTGCTTTATG
TACTCTGTTGAGAACCCTCTCTTCCGTGATGGTATGAGTGATTTGGACAAGTTGTTATAT
CGCCCACGCTTTACTGGTGTGGGAGCACAAATCCTTGGTGCGGACGATAAGTACATATGC
CAGTTCTCTGAGAAATCAAACAATTTTTGGGGAAGTAGGCATGAACTAATGCTGGGAAAC
ACTTTCATTTCCAATAAAGAGTCAACCCCACCGCAAGGGGAGGTGCCCCCTCAGGATTTC
TCTAGGCGTGTTTTGGAAGGGTTCCAAGTCACCCCAATATGGCATCAAGGTTTCATACGT
GATGATGGAAGGTCAAACTACGTGCCAAATGTCCAAACAGCTCGCTGGGAGTACAGCACT
CGTCCAGTTTATGGGTGGGGTGATGTCAAATCTAAGCAGTTGTCCACAGCTGGTTGGCTT
GCAGCTTTTCCTTTCTTTGAACCTCATTGGCAAATTTGCATGGCTAGTGGCTTGTCCACA
GGATGGATAGAATGGGATGGAGAACGGTTTGAATTTGAAAATGCTCCATCTTACTCAGAA
AAGAACTGGGGCGGAGGTTTTCCAAGAAAGTGGTATTGGATCCAGTGCAATGTCTTCCCA
GGAGCTTCTGGTGAAGTTTCTTTAACTGCTGCTGGTGGATTGAGGAAAATTGGACTTGGT
GATACCTATGAAAGTCCTTCACTGATTGGAATACATTATGAGGGACAGTTTTTTGAATTT
GTACCTTGGACTGGAACAGTAAGCTGGGACATTGGACTGTGGGGTCTTTGGAAAATGTCT
GGCGAGAACAAAACTCATCTGGTAGAAATAGAAGCAACCACTGCAGAATCAGGAACTGCT
CTGCGCGCTCCTACTATCGAGGCTGGACTGGTACCAGCGTGCAAAGACACCTGCTATGGA
GATCTAAGGCTACAGTTGTGGGAAAAGAAATACGATGGTAGCAAGGGAGAGATGATACTC
GACGCCACAAGCAACATGGCAGCACTAGAAGTTGGCGGAGGCCCCTGGTTCAATGGGTGG
AAAGGGACAACTGTTGTGAACGAGGTTGTAAATAACATTGTGGGCACGCCAGTCGATGTA
GAGAGCCTCCTCCCAATCCCATTTCTTAAGCCCCCAGGCCTATAG

Peptide Sequence

PEP ID

Zm00001d015985_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:5:136805753:136822192:1 gene:Zm00001d015985 transcript:Zm00001d015985_T005 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:sucrose export defective1 description:Probable tocopherol cyclase%2C chloroplastic

Sequence

MNLAVAAALPSVTPRTGVVLPRSSRRHCPRGVVPRAASSSVSSFTSPSAAAAPIYTPTPQ
DRSLRTPHSGYHFDGTARPFFEGWYFKVSIPECRQSFCFMYSVENPLFRDGMSDLDKLLY
RPRFTGVGAQILGADDKYICQFSEKSNNFWGSRHELMLGNTFISNKESTPPQGEVPPQDF
SRRVLEGFQVTPIWHQGFIRDDGRSNYVPNVQTARWEYSTRPVYGWGDVKSKQLSTAGWL
AAFPFFEPHWQICMASGLSTGWIEWDGERFEFENAPSYSEKNWGGGFPRKWYWIQCNVFP
GASGEVSLTAAGGLRKIGLGDTYESPSLIGIHYEGQFFEFVPWTGTVSWDIGLWGLWKMS
GENKTHLVEIEATTAESGTALRAPTIEAGLVPACKDTCYGDLRLQLWEKKYDGSKGEMIL
DATSNMAALEVGGGPWFNGWKGTTVVNEVVNNIVGTPVDVESLLPIPFLKPPGL

Transcript Sequence

Transcript ID

Zm00001d015985_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:136805753:136822192:1 gene:Zm00001d015985 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:sucrose export defective1 description:Probable tocopherol cyclase%2C chloroplastic

Sequence

GCACGGCGACTGGACTATACTGCTACCATGAACCTCGCCGTCGCAGCCGCACTGCCGTCC
GTGACGCCACGTACCGGCGTCGTGCTCCCACGGAGCAGTCGCCGACACTGCCCCCGCGGG
GTCGTCCCACGCGCGGCCTCGAGCTCCGTTTCCTCCTTTACCTCCCCCTCAGCAGCGGCG
GCGCCCATCTACACGCCCACGCCGCAGGACCGGTCTCTCCGGACGCCGCATAGCGGGTAC
CACTTTGATGGCACGGCTCGACCTTTCTTTGAAGGATGGTACTTCAAGGTGTCGATTCCA
GAGTGCAGGCAGAGTTTCTGCTTTATGTACTCTGTTGAGAACCCTCTCTTCCGTGATGGT
ATGAGTGATTTGGACAAGTTGTTATATCGCCCACGCTTTACTGGTGTGGGAGCACAAATC
CTTGGTGCGGACGATAAGTACATATGCCAGTTCTCTGAGAAATCAAACAATTTTTGGGGA
AGTAGGCATGAACTAATGCTGGGAAACACTTTCATTTCCAATAAAGAGTCAACCCCACCG
CAAGGGGAGGTGCCCCCTCAGGATTTCTCTAGGCGTGTTTTGGAAGGGTTCCAAGTCACC
CCAATATGGCATCAAGGTTTCATACGTGATGATGGAAGGTCAAACTACGTGCCAAATGTC
CAAACAGCTCGCTGGGAGTACAGCACTCGTCCAGTTTATGGGTGGGGTGATGTCAAATCT
AAGCAGTTGTCCACAGCTGGTTGGCTTGCAGCTTTTCCTTTCTTTGAACCTCATTGGCAA
ATTTGCATGGCTAGTGGCTTGTCCACAGGATGGATAGAATGGGATGGAGAACGGTTTGAA
TTTGAAAATGCTCCATCTTACTCAGAAAAGAACTGGGGCGGAGGTTTTCCAAGAAAGTGG
TATTGGATCCAGTGCAATGTCTTCCCAGGAGCTTCTGGTGAAGTTTCTTTAACTGCTGCT
GGTGGATTGAGGAAAATTGGACTTGGTGATACCTATGAAAGTCCTTCACTGATTGGAATA
CATTATGAGGGACAGTTTTTTGAATTTGTACCTTGGACTGGAACAGTAAGCTGGGACATT
GGACTGTGGGGTCTTTGGAAAATGTCTGGCGAGAACAAAACTCATCTGGTAGAAATAGAA
GCAACCACTGCAGAATCAGGAACTGCTCTGCGCGCTCCTACTATCGAGGCTGGACTGGTA
CCAGCGTGCAAAGACACCTGCTATGGAGATCTAAGGCTACAGTTGTGGGAAAAGAAATAC
GATGGTAGCAAGGGAGAGATGATACTCGACGCCACAAGCAACATGGCAGCACTAGAAGTT
GGCGGAGGCCCCTGGTTCAATGGGTGGAAAGGGACAACTGTTGTGAACGAGGTTGTAAAT
AACATTGTGGGCACGCCAGTCGATGTAGAGAGCCTCCTCCCAATCCCATTTCTTAAGCCC
CCAGGCCTATAGGATCACCAACGAATGTCACAATGAAGAAGTATCACGGATATCAATGTT
GATCATACAGTAAAACTGTGCCCAGTTCAATAATAATTCATGATTTTTACTTGTTTT