Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d015955_T007
CDS Infomation	cds chromosome:B73_RefGen_v4:5:134000311:134004181:1 gene:Zm00001d015955 gene_biotype:protein_coding transcript_biotype:protein_coding description:Topoisomerase II-associated protein PAT1
Sequence	ATGCCATCTCCTCCCACTGCATTCCAGTTGCATATGTCTTCTGCACAAAATGATCTACTC CTTCCCCAGTTCCATCATGGAGGTACGCCTCCAGGGCCTCCATTTGGTAGACAGAATCAT GTTTTAAATAATGGATCGATGCATGGAAAGGGTCCCAGGTTTATGCCAGGTTTGATGCCT CATCAATTGCAATGTCCCAATGGACTGATGCCACCTCAGATGCAGCCACCTCATCAACAT GGAATGCTGCCAATACAACAGTCCCCACCACAGTTCTCACAACTACATGCACGGATGATT GGTCCCCATCATTCCCCACCACAAAGCATGCAGATGTTTGGTCCTCAACATCCTTCTTCA CAAGTGATGAGTAGATTTGATGCAAACTTTGCTATGCCTGACTTGAGTGATCCAAGAGCA AGATCAATGTTGCAACATGAAAGGCTGGGACAGCGTTATCCTCACCAAGGTTATGAGCTC AATAATATTAGGATAGATAATGGATGGTCACGGTTCAGATCCAAGTACATGTGTACTGAA GAAATCGAGAACATTGCAAGGATGCAGCAGGCTGCCACACACATCAATGACCCGTATATT GATGATTACTACCATCAAGCTTGTTTAGCAAAAAAATCAGCAGGGGCTCAACTAAAGCAC CACTTTTGTCCAACCTTGATTAGAGATCCATCTTCACGTGCACGCAGTAAGGATGAGCCA CATGCATATCTACAGGTTGATGCTCTTGGGAGGCTTCCATTTTCTTCTATCCGCAGGCCT CGTCCGCTTCTTGATGTTGAACAAGCCTCTGCACCAAGTGATAATGCTGAAAAATCTGTG TCAAAGCCTCTTGACCAAGAGCCCATGCTTGCTGCTAGGATCACAATTGAAGACGGACTT TGCCTACTGCTTGATGTTGATGATATTGATCGTCTGCTGCAATTTAGCCAGCAGCAAGAT GGTGGTTTGCAACTGAGAAACAGAAGACAGGGGCTCCTCGAGCAGCTTGCAGAATCACTG CAATTAGTTGATCTCCTTGCACCAAATAAGAATTCACCTGTGTCTCCGTATGATGATTTG GTGTTTCTTCGCATAGTCACTCTATCAAAGGGCCAGAAGCTACTTTCCCATTACCTTGAG CTTCTGACATCAGGCAGTGAGCTTGCAAGGATAGCTTGCATGGCAGTCTTCCGGCATCTA AGATCCATATTTGGAAATATGCCCTCTGATATCAGTGCAGTGGAGACAATGAATAGACTT GCAAAAGCTGTATCCGCACATATTGTTCAGATGGATTTGAGTGATCTCAGTGCTTGCCTT GCTGCTGTTGTGTGTTCATCATTGCAACCACCTCTTCGACCTCTGGGATCCCCAGCAGGT GATTGGGCTTCTGTCATCATAAAGTATGTATTGGACAGAGCAACAGTTCTACTCACTGAT CACCATGTGGCTTCTAACTACAGCATGCGGAATCGATCTCTATGGCAGGCATCATTCGAC GCCTTTTTTGGGCTGCTTACACAGTACTGCATGAGTAAGTTTGATCGTGTGGTTCATACT GCCCAATTGCAACCTGCTGCTGCAACCGTTATAACCAGGGAAATGCCAGTAGAGCTTCTG CGTGCCAGCCTCCCTCATACCAATGAGGCTCAACGCAAGCAATTGCTCAGTTTTGCTCAA CGCACTGTGCCTGTTGGTACCCACAGTTCTCATGGGTCTTGGTAG

Peptide Sequence

PEP ID	Zm00001d015955_P007
PEP Infomation	pep chromosome:B73_RefGen_v4:5:134000311:134004181:1 gene:Zm00001d015955 transcript:Zm00001d015955_T007 gene_biotype:protein_coding transcript_biotype:protein_coding description:Topoisomerase II-associated protein PAT1
Sequence	MPSPPTAFQLHMSSAQNDLLLPQFHHGGTPPGPPFGRQNHVLNNGSMHGKGPRFMPGLMP HQLQCPNGLMPPQMQPPHQHGMLPIQQSPPQFSQLHARMIGPHHSPPQSMQMFGPQHPSS QVMSRFDANFAMPDLSDPRARSMLQHERLGQRYPHQGYELNNIRIDNGWSRFRSKYMCTE EIENIARMQQAATHINDPYIDDYYHQACLAKKSAGAQLKHHFCPTLIRDPSSRARSKDEP HAYLQVDALGRLPFSSIRRPRPLLDVEQASAPSDNAEKSVSKPLDQEPMLAARITIEDGL CLLLDVDDIDRLLQFSQQQDGGLQLRNRRQGLLEQLAESLQLVDLLAPNKNSPVSPYDDL VFLRIVTLSKGQKLLSHYLELLTSGSELARIACMAVFRHLRSIFGNMPSDISAVETMNRL AKAVSAHIVQMDLSDLSACLAAVVCSSLQPPLRPLGSPAGDWASVIIKYVLDRATVLLTD HHVASNYSMRNRSLWQASFDAFFGLLTQYCMSKFDRVVHTAQLQPAAATVITREMPVELL RASLPHTNEAQRKQLLSFAQRTVPVGTHSSHGSW

Transcript Sequence

Transcript ID	Zm00001d015955_T007
Transcript Infomation	cdna chromosome:B73_RefGen_v4:5:134000311:134004181:1 gene:Zm00001d015955 gene_biotype:protein_coding transcript_biotype:protein_coding description:Topoisomerase II-associated protein PAT1
Sequence	GGAGGGTGTAGGTTCATTTGCTGACATTGATGATCTTGCTGGAACTTTCTCGAAGCTGAC CAGAATAGTCAATGGACCAAAGCAACCAGTAGTAGTTAGTCATAGTGGATCAATTTCTAG ACAAAGTTCTAATGCAGAGTGGGTGCAAGAGTCTGAACTTCCATATTGGCCTACACAGCC TGTATTGGACACTGATCACGGGCTGGATAAAAAGAATTGGTGGTCCCAACCACCCCATTC AGTCAACTTCATTGACTATAGACTGCAGAGGACATCGTCATCCCCACAGCAAGATGCTCA GCATAATCCTGTTGAACCTATTCTTGAAGCAAAGCCATCTCCTTTACATAGAACATCAAC GTACCCACAACAAGAACCTCAGTACAGTAATACTGAACCAATTCCTGTGCCCAAGTCATC ATTCATTTCATGTCCTCCATCTGGTGCAGCATCTCATTCTTCACCTAGTCAGCCACATCA TGTGAACATGCCATCTCCTCCCACTGCATTCCAGTTGCATATGTCTTCTGCACAAAATGA TCTACTCCTTCCCCAGTTCCATCATGGAGGTACGCCTCCAGGGCCTCCATTTGGTAGACA GAATCATGTTTTAAATAATGGATCGATGCATGGAAAGGGTCCCAGGTTTATGCCAGGTTT GATGCCTCATCAATTGCAATGTCCCAATGGACTGATGCCACCTCAGATGCAGCCACCTCA TCAACATGGAATGCTGCCAATACAACAGTCCCCACCACAGTTCTCACAACTACATGCACG GATGATTGGTCCCCATCATTCCCCACCACAAAGCATGCAGATGTTTGGTCCTCAACATCC TTCTTCACAAGTGATGAGTAGATTTGATGCAAACTTTGCTATGCCTGACTTGAGTGATCC AAGAGCAAGATCAATGTTGCAACATGAAAGGCTGGGACAGCGTTATCCTCACCAAGGTTA TGAGCTCAATAATATTAGGATAGATAATGGATGGTCACGGTTCAGATCCAAGTACATGTG TACTGAAGAAATCGAGAACATTGCAAGGATGCAGCAGGCTGCCACACACATCAATGACCC GTATATTGATGATTACTACCATCAAGCTTGTTTAGCAAAAAAATCAGCAGGGGCTCAACT AAAGCACCACTTTTGTCCAACCTTGATTAGAGATCCATCTTCACGTGCACGCAGTAAGGA TGAGCCACATGCATATCTACAGGTTGATGCTCTTGGGAGGCTTCCATTTTCTTCTATCCG CAGGCCTCGTCCGCTTCTTGATGTTGAACAAGCCTCTGCACCAAGTGATAATGCTGAAAA ATCTGTGTCAAAGCCTCTTGACCAAGAGCCCATGCTTGCTGCTAGGATCACAATTGAAGA CGGACTTTGCCTACTGCTTGATGTTGATGATATTGATCGTCTGCTGCAATTTAGCCAGCA GCAAGATGGTGGTTTGCAACTGAGAAACAGAAGACAGGGGCTCCTCGAGCAGCTTGCAGA ATCACTGCAATTAGTTGATCTCCTTGCACCAAATAAGAATTCACCTGTGTCTCCGTATGA TGATTTGGTGTTTCTTCGCATAGTCACTCTATCAAAGGGCCAGAAGCTACTTTCCCATTA CCTTGAGCTTCTGACATCAGGCAGTGAGCTTGCAAGGATAGCTTGCATGGCAGTCTTCCG GCATCTAAGATCCATATTTGGAAATATGCCCTCTGATATCAGTGCAGTGGAGACAATGAA TAGACTTGCAAAAGCTGTATCCGCACATATTGTTCAGATGGATTTGAGTGATCTCAGTGC TTGCCTTGCTGCTGTTGTGTGTTCATCATTGCAACCACCTCTTCGACCTCTGGGATCCCC AGCAGGTGATTGGGCTTCTGTCATCATAAAGTATGTATTGGACAGAGCAACAGTTCTACT CACTGATCACCATGTGGCTTCTAACTACAGCATGCGGAATCGATCTCTATGGCAGGCATC ATTCGACGCCTTTTTTGGGCTGCTTACACAGTACTGCATGAGTAAGTTTGATCGTGTGGT TCATACTGCCCAATTGCAACCTGCTGCTGCAACCGTTATAACCAGGGAAATGCCAGTAGA GCTTCTGCGTGCCAGCCTCCCTCATACCAATGAGGCTCAACGCAAGCAATTGCTCAGTTT TGCTCAACGCACTGTGCCTGTTGGTACCCACAGTTCTCATGGGTCTTGGTAGTGGAAGCA TCGAGTTCTTATTAGAACTGAGTACTCGCTAAAAATGGCTCTTTAGGGGACCTGTTATGC TTCCCCTGAAAGAAGAGAGGGTTAAACTTGTCACTAGTACTATGAATATCAAAAAACAAG AGTAAAGATGGTTGGAGCATCAAAATGGTAATACTCAACATCAAATTTTGTGTCACTCAA ACATGTTTGCATGGATTACTTTTGTAGGGTAGTCAGATGTCTGCGTCAATTTTGTCAATA CCTGTGTTGGTTATTGCAAAATGGTTCCTGTGGGTCTGTTGCTCTTAAGAGGAATCCGCA ATTGGTCTGTAGCGGTTACTTGAAGACACTGTTTAATTGCTCTTCAAGGTGGTTCTTTTC AAGGAGTAGTTGCCTTGGCCTCAAGATGTGGAAGTTGGCATAGCCACAACACGTCGTTAA GTTCTTCAGGAACAATGCGGTTGCTATGGAAGTTGTAAAATGGTAGTATTATTGTTTTGC GACGGCCTTTTGCCTTTTG