Plant GARDEN
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d015733_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:5:114324145:114328130:-1 gene:Zm00001d015733 gene_biotype:protein_coding transcript_biotype:protein_coding description:Rhamnogalacturonate lyase family protein
Sequence

ATGGCCGCCGCGACTGTTGTTGGCGGAACGTGGACGAGAACATCAAGGTCGTCGTTGTCG
CTAGTGGTGGTATTCCTGCTGCTACACATGGGCGTCGGAGCCACTGCGACGCCGCCGCGG
CACCACACCGCCGCCGCCAGTGGCATCACATTGCGCGTCGATGACTATCTGCATCAGGTG
GCTGTGGACAACGGCCTGGTGCAGGTGACGCTGTCCAAGCCACAGGGCCACATTACCGGC
GTCCGCTACAACGGCCACCGCAACCTCCTGCACTACGACGGCAGCCAAAACTCGGGAGGG
TATTGGGATGTGGTGTGGAACTACCCGGGCTCCGATCAGCCAGGAGGAATGATGGACACG
TTGGACAGTACGGAGTTCAAGGTGGTGGTTTCAAGCGAGGACCAAGTGGAGCTTTCTTTC
AGCAGCGCCTACACTCCGTCGTCGCCAACTAGTGTTCACCTGCATGTCGACAAGAGGCTC
GTGGTACTGAAAGGCAGCTCCGGGTTCTACTGCTACGCCATCTTGGAGCACGCCCGCGAC
TGGCCCGCCCTCAACGTCACCGAGGCCAGGCTCGCCTTCAAGCTCAACACGGACGCGTTC
AAGTACATGGCGGTCTCGGACGACATCCAGAGGTACATGCCGAGCGCGGCGGACAGGGCC
GAGCCACGTGGCGCCCCGCTCGCCTACAAGGAGGCCGTGCTGCTGGTGAACCCGCAGGAG
CCACGGTTCAGGGGCGAGGTGGACGACAAGTACCAGTACTCCATGGACAACAAGGACAGC
ACCGTGCATGGATGGACCACGGCCGGCGGCGTAGAACGCTCGCCGAACGACAACCCCGTC
GTCGGCTTCTGGGTCATCACGCCCAGCAACGAGTTCAAGAGCGGAGGACCCACCAAGCGG
GAGCTCACCTCCCACGTCGGCCCCACCACGCTCACGATGTTTCTGGGGACGCATTACGTC
GGTAACGACATCGTGCTCAGCATCAGCGGCGGCGAGTACTGGAAGAAGGTGATGGGCCCT
GTCTTCGTGTACCTCAACTCCCGCCCGAGGCGAGGCGGCATCGGCGGCTGCGACCACAGC
CGGGCGCTCTGGGCAGACGCCAAGGCGCAGGCGCGGGCGGAGGCCGGCAAGTGGCCCTAC
AGCTTCCCAAAGTCACCGGACTTCGCCAAGGCCGGAGAGAGGGGCGGCGTCACCGGCAGG
CTGCTGGTCAGGGACGACGACAGGTTCACGACCGACGACGACAATAACGACGCGGCCGCC
GCTCCCATGCCCGTTGGGACGGAGGCGTACGTGGGTCTCGCGGCGCCCGGGCAGGCCGGC
AGCTGGGTAACGGAGTGCAAGGGCTACCAGTTCTGGACAGCGACAACGGCGACGGAGGAC
GGCTTCGTATTCACCATCGCCAACGTCCGGGAGGGAGTGTACAGCCTCTACGCGTGGGTT
CCCGGGGTCCTCGGAGAATACGTGCACGCTTCCCCGGTGACCGTGGCGGTAGGCGGCGCC
GTCGTCGACCTCGGCGACCTCGTGTTCCGGCCCCCCAGGTCGGGCCCGACGTTGTGGGAG
ATTGGGGTCCCCGACCGGAAGGCCGCGGAGTTCTTCGTTCCAGACGTGGATCCCCGATTC
GCCAACAGGCTCTTCCTGCACAAGGACAGGTACAGGCAGTACGGTCTGTGGGCGAGGTAC
GCCGAGCTGTACCCTGACGGCGACCCCGTCTTCACCGTCGGCCGGAGCGAACCTTGGAAG
GACTGGTTCTTCGCGCATGTCACCAGGAAGGTAGGCGAAGGCCGGTACGCGCCGACGACG
CGGGAGATCCGATTCAGGCTGTACCGCGTCGTGGCCGACGGCACGTACACGCTGCGTGTG
TCGCTCGCTGCCGCGCACATGTCCAGGCTGCAGGTGCGCGTGAATGGGCGGGGCGGTGGC
GGTGCGGCGGAGCTGACCACACCGGAGTTCGGCGGCGGGAACGCCATCGCGCGCCACGGG
ATCCATGGAGTGCAGTGGAACTTCCAGTTCCCAATCAGGGGATACCTGCTGCGGGAAGGC
GACAACAGCGTCAGCATCACGCAGACCAGGGCCGACGGCGAGTTCCTAGGTGTCTTGTAC
GACTACGTCCGCCTCGAGGCACCTCCGGCGCACTGCCGAGACCCCACGGCCACGGCGACG
ACGTGGCGTACATGA

Peptide Sequence

PEP ID

Zm00001d015733_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:5:114324145:114328130:-1 gene:Zm00001d015733 transcript:Zm00001d015733_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Rhamnogalacturonate lyase family protein
Sequence

MAAATVVGGTWTRTSRSSLSLVVVFLLLHMGVGATATPPRHHTAAASGITLRVDDYLHQV
AVDNGLVQVTLSKPQGHITGVRYNGHRNLLHYDGSQNSGGYWDVVWNYPGSDQPGGMMDT
LDSTEFKVVVSSEDQVELSFSSAYTPSSPTSVHLHVDKRLVVLKGSSGFYCYAILEHARD
WPALNVTEARLAFKLNTDAFKYMAVSDDIQRYMPSAADRAEPRGAPLAYKEAVLLVNPQE
PRFRGEVDDKYQYSMDNKDSTVHGWTTAGGVERSPNDNPVVGFWVITPSNEFKSGGPTKR
ELTSHVGPTTLTMFLGTHYVGNDIVLSISGGEYWKKVMGPVFVYLNSRPRRGGIGGCDHS
RALWADAKAQARAEAGKWPYSFPKSPDFAKAGERGGVTGRLLVRDDDRFTTDDDNNDAAA
APMPVGTEAYVGLAAPGQAGSWVTECKGYQFWTATTATEDGFVFTIANVREGVYSLYAWV
PGVLGEYVHASPVTVAVGGAVVDLGDLVFRPPRSGPTLWEIGVPDRKAAEFFVPDVDPRF
ANRLFLHKDRYRQYGLWARYAELYPDGDPVFTVGRSEPWKDWFFAHVTRKVGEGRYAPTT
REIRFRLYRVVADGTYTLRVSLAAAHMSRLQVRVNGRGGGGAAELTTPEFGGGNAIARHG
IHGVQWNFQFPIRGYLLREGDNSVSITQTRADGEFLGVLYDYVRLEAPPAHCRDPTATAT
TWRT

Transcript Sequence

Transcript ID

Zm00001d015733_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:114324145:114328130:-1 gene:Zm00001d015733 gene_biotype:protein_coding transcript_biotype:protein_coding description:Rhamnogalacturonate lyase family protein
Sequence

AACCAACTCTGATCCTTCCTTCCTTGTCTCTCTCGATCGAACCCAGGCCACCGGATACCC
GAGAGCGCTAGTGTTGTTGCCATGGCCGCCGCGACTGTTGTTGGCGGAACGTGGACGAGA
ACATCAAGGTCGTCGTTGTCGCTAGTGGTGGTATTCCTGCTGCTACACATGGGCGTCGGA
GCCACTGCGACGCCGCCGCGGCACCACACCGCCGCCGCCAGTGGCATCACATTGCGCGTC
GATGACTATCTGCATCAGGTGGCTGTGGACAACGGCCTGGTGCAGGTGACGCTGTCCAAG
CCACAGGGCCACATTACCGGCGTCCGCTACAACGGCCACCGCAACCTCCTGCACTACGAC
GGCAGCCAAAACTCGGGAGGGTATTGGGATGTGGTGTGGAACTACCCGGGCTCCGATCAG
CCAGGAGGAATGATGGACACGTTGGACAGTACGGAGTTCAAGGTGGTGGTTTCAAGCGAG
GACCAAGTGGAGCTTTCTTTCAGCAGCGCCTACACTCCGTCGTCGCCAACTAGTGTTCAC
CTGCATGTCGACAAGAGGCTCGTGGTACTGAAAGGCAGCTCCGGGTTCTACTGCTACGCC
ATCTTGGAGCACGCCCGCGACTGGCCCGCCCTCAACGTCACCGAGGCCAGGCTCGCCTTC
AAGCTCAACACGGACGCGTTCAAGTACATGGCGGTCTCGGACGACATCCAGAGGTACATG
CCGAGCGCGGCGGACAGGGCCGAGCCACGTGGCGCCCCGCTCGCCTACAAGGAGGCCGTG
CTGCTGGTGAACCCGCAGGAGCCACGGTTCAGGGGCGAGGTGGACGACAAGTACCAGTAC
TCCATGGACAACAAGGACAGCACCGTGCATGGATGGACCACGGCCGGCGGCGTAGAACGC
TCGCCGAACGACAACCCCGTCGTCGGCTTCTGGGTCATCACGCCCAGCAACGAGTTCAAG
AGCGGAGGACCCACCAAGCGGGAGCTCACCTCCCACGTCGGCCCCACCACGCTCACGATG
TTTCTGGGGACGCATTACGTCGGTAACGACATCGTGCTCAGCATCAGCGGCGGCGAGTAC
TGGAAGAAGGTGATGGGCCCTGTCTTCGTGTACCTCAACTCCCGCCCGAGGCGAGGCGGC
ATCGGCGGCTGCGACCACAGCCGGGCGCTCTGGGCAGACGCCAAGGCGCAGGCGCGGGCG
GAGGCCGGCAAGTGGCCCTACAGCTTCCCAAAGTCACCGGACTTCGCCAAGGCCGGAGAG
AGGGGCGGCGTCACCGGCAGGCTGCTGGTCAGGGACGACGACAGGTTCACGACCGACGAC
GACAATAACGACGCGGCCGCCGCTCCCATGCCCGTTGGGACGGAGGCGTACGTGGGTCTC
GCGGCGCCCGGGCAGGCCGGCAGCTGGGTAACGGAGTGCAAGGGCTACCAGTTCTGGACA
GCGACAACGGCGACGGAGGACGGCTTCGTATTCACCATCGCCAACGTCCGGGAGGGAGTG
TACAGCCTCTACGCGTGGGTTCCCGGGGTCCTCGGAGAATACGTGCACGCTTCCCCGGTG
ACCGTGGCGGTAGGCGGCGCCGTCGTCGACCTCGGCGACCTCGTGTTCCGGCCCCCCAGG
TCGGGCCCGACGTTGTGGGAGATTGGGGTCCCCGACCGGAAGGCCGCGGAGTTCTTCGTT
CCAGACGTGGATCCCCGATTCGCCAACAGGCTCTTCCTGCACAAGGACAGGTACAGGCAG
TACGGTCTGTGGGCGAGGTACGCCGAGCTGTACCCTGACGGCGACCCCGTCTTCACCGTC
GGCCGGAGCGAACCTTGGAAGGACTGGTTCTTCGCGCATGTCACCAGGAAGGTAGGCGAA
GGCCGGTACGCGCCGACGACGCGGGAGATCCGATTCAGGCTGTACCGCGTCGTGGCCGAC
GGCACGTACACGCTGCGTGTGTCGCTCGCTGCCGCGCACATGTCCAGGCTGCAGGTGCGC
GTGAATGGGCGGGGCGGTGGCGGTGCGGCGGAGCTGACCACACCGGAGTTCGGCGGCGGG
AACGCCATCGCGCGCCACGGGATCCATGGAGTGCAGTGGAACTTCCAGTTCCCAATCAGG
GGATACCTGCTGCGGGAAGGCGACAACAGCGTCAGCATCACGCAGACCAGGGCCGACGGC
GAGTTCCTAGGTGTCTTGTACGACTACGTCCGCCTCGAGGCACCTCCGGCGCACTGCCGA
GACCCCACGGCCACGGCGACGACGTGGCGTACATGATCGGTGCTTGGTCGCCACCGTCTA
CCCTTGCCTAGACCAGGTAGTACCGTAGTAGCAGTAGCTAGGTGATGATAGCATCGTCTC
TAGCTAACAGAGATATATACTTTCATAGTTAGTGGACCGTGCGTTTGCGATGTGTTGCCA
GGGTACGTATGAGATTTTTGGGTACCTCTATTATTAA