Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d015715_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:5:111122849:111143518:1 gene:Zm00001d015715 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGGGAAGGCTAGCCCTGGCTGTGCCGGTGATGCTTCTGCTGCTTTGCACGACGTGCAGA
CTGACGCTCGGAATTACAGACGGTCTGCTCCCGAACGGCAACTTCGAGCGGAGCCCGCTG
CCGTCGCAGCTGCGGGGGACCCGGGTGGTGGGCGCGTCGGCGATCCCGTCGTGGCAGACG
TCGGGGTTCGTGGAGTACATCTCGTCGGGGCAGAAGCAGGGTGACATGGTGCTGGTGGTG
CCCGAGGGCGCCTACGCCGTGCGGCTCGGGAACGAGGCGTCCATCCGGCAGCGGCTCCGG
GGCGCCGCCCGCGGCGCGCGCTACTCGCTCACGTTCAGCGCGGCGCGGACGTGCGCGCAG
GCGGAGCAGCTGAACGTTTCTGCGTCGGGGCAGTCGGGCCTGCTGGCCATGCAGACCATG
TACAGCAGCAACGGGTGGGACTCGTACGCCTGGGCCTGGGTCGCCAACGCCGACGAGGTC
GACATCGTCATCCACAACCCCGGCGTCACCGAGGACCCCGCCTGCGGCCCGCTCATCGAT
TCCGTCGCCATCAAGACGCTCAACCCGCCTCGTCGCACCAACAAGAACTTGGTCAAGAAT
GGTGACTTCGAGGAGGGCCCGTACATCATCCCGGGGACCAAGTGGGGCGTGCTGATCCCA
TCGCGCGTGGTGGAGGACCATTCGCCGCTTCCGGGGTGGATGGTGGAGTCGCTCAAGGCC
ATCAAGTACATCGACGGCGAGAGCTTCGCCGTGCCGCGGGGTCGGCGCGCCGTGGAGCTG
CTGGCCGGGAGGGAGAGCGCGATCGCGCAGGTCATCCGCACCGTGCCGGGGCGACAGTAC
GTGCTGTCCTTCACCATCGGCGACGCCAGTAACGCCTGCCGCGGCTCGCTCATGGTGGAG
GCATACGCGGGCCGGGAGTCCACCAAGGTGGCGTACGAGTCGGCGGGGAAGGGCGGCGTG
AAGCGCGCCGTGCTGCCGTTCCGCGCCGCGTCGGCGCGCACCAGGCTCGTCTTCTTCAGC
TCCTTCTACAGCACCAGGAGCGACGACCTCAGCTCGCTATGCGGGCCAGTGCTTGATGAC
GTCGTCGTCGTCAGCGGCAATTTTATTGCCCAGATGAATCCTGCTTGCCACTATTTTACG
GTTTTACTGTTATATTCTCGGAACTACTTGGAAAGGAAAAAACCATCTGAAGCTAAATTT
TTCAACAAGCCACTTGAGAACTACCATTACATGGCTATCATATTTGGGAATCAGCAAGGA
ACTGGACTGTTTGCAAAATGTACCAGTGATCCCCTAGGTTTCGACACATCTGAAAGTGCA
GGTACATATGGTGTGGATTATTCTGGAGACTTGGCTGGTCATGAGAGTAACAATGCAAGT
CCAACTCATGATAGTGGAGAATCATTGAACCCAAGTGGTCCAATTCGTGATGGTGGAGAC
TCATCTACTCGAAGTGGTGCAAGAAGGAACAGAGGGTGCATGATGATGGAAGATGAGGAT
CCATTGATATGCACTGTCACTGAAGCTTTTAAGACTCTTTCAGATGCAATCAAGCAGTCA
GCACCACAACCACGTTTGATAATCCCACCCAACCTATGGACTATGATGAAACAGATTCCT
GTCTTTGAAAGGAAACATATAGCACACTACTATGGCTACTTGTGTGAGAATCCAGCCCTT
GCTTATGCCTTTCTAGAGATGGGACTAGATGATCAAATGGTATGGGTGTCTATGTACATC
AAGACTCATCTTTCTGATTGA

Peptide Sequence

PEP ID

Zm00001d015715_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:5:111122849:111143518:1 gene:Zm00001d015715 transcript:Zm00001d015715_T001 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MGRLALAVPVMLLLLCTTCRLTLGITDGLLPNGNFERSPLPSQLRGTRVVGASAIPSWQT
SGFVEYISSGQKQGDMVLVVPEGAYAVRLGNEASIRQRLRGAARGARYSLTFSAARTCAQ
AEQLNVSASGQSGLLAMQTMYSSNGWDSYAWAWVANADEVDIVIHNPGVTEDPACGPLID
SVAIKTLNPPRRTNKNLVKNGDFEEGPYIIPGTKWGVLIPSRVVEDHSPLPGWMVESLKA
IKYIDGESFAVPRGRRAVELLAGRESAIAQVIRTVPGRQYVLSFTIGDASNACRGSLMVE
AYAGRESTKVAYESAGKGGVKRAVLPFRAASARTRLVFFSSFYSTRSDDLSSLCGPVLDD
VVVVSGNFIAQMNPACHYFTVLLLYSRNYLERKKPSEAKFFNKPLENYHYMAIIFGNQQG
TGLFAKCTSDPLGFDTSESAGTYGVDYSGDLAGHESNNASPTHDSGESLNPSGPIRDGGD
SSTRSGARRNRGCMMMEDEDPLICTVTEAFKTLSDAIKQSAPQPRLIIPPNLWTMMKQIP
VFERKHIAHYYGYLCENPALAYAFLEMGLDDQMVWVSMYIKTHLSD

Transcript Sequence

Transcript ID

Zm00001d015715_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:111122849:111143518:1 gene:Zm00001d015715 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

CATGTTCTTGACCCTGCCAACACCGCACGTTGCAGGTTCTGACATACAGTTTCTGAGGTC
GCCTCCCACTCCATTTAAGCACCCGCGCCCTCCTCACTCCTCCGCACGCCACATTGATCG
ATCGAACGATCTATCAGAAGTTCAGAATCTATCTCTCTGCTCCTGGTTCACCATTGCGCA
AATTGGAGCAAGATGGGAAGGCTAGCCCTGGCTGTGCCGGTGATGCTTCTGCTGCTTTGC
ACGACGTGCAGACTGACGCTCGGAATTACAGACGGTCTGCTCCCGAACGGCAACTTCGAG
CGGAGCCCGCTGCCGTCGCAGCTGCGGGGGACCCGGGTGGTGGGCGCGTCGGCGATCCCG
TCGTGGCAGACGTCGGGGTTCGTGGAGTACATCTCGTCGGGGCAGAAGCAGGGTGACATG
GTGCTGGTGGTGCCCGAGGGCGCCTACGCCGTGCGGCTCGGGAACGAGGCGTCCATCCGG
CAGCGGCTCCGGGGCGCCGCCCGCGGCGCGCGCTACTCGCTCACGTTCAGCGCGGCGCGG
ACGTGCGCGCAGGCGGAGCAGCTGAACGTTTCTGCGTCGGGGCAGTCGGGCCTGCTGGCC
ATGCAGACCATGTACAGCAGCAACGGGTGGGACTCGTACGCCTGGGCCTGGGTCGCCAAC
GCCGACGAGGTCGACATCGTCATCCACAACCCCGGCGTCACCGAGGACCCCGCCTGCGGC
CCGCTCATCGATTCCGTCGCCATCAAGACGCTCAACCCGCCTCGTCGCACCAACAAGAAC
TTGGTCAAGAATGGTGACTTCGAGGAGGGCCCGTACATCATCCCGGGGACCAAGTGGGGC
GTGCTGATCCCATCGCGCGTGGTGGAGGACCATTCGCCGCTTCCGGGGTGGATGGTGGAG
TCGCTCAAGGCCATCAAGTACATCGACGGCGAGAGCTTCGCCGTGCCGCGGGGTCGGCGC
GCCGTGGAGCTGCTGGCCGGGAGGGAGAGCGCGATCGCGCAGGTCATCCGCACCGTGCCG
GGGCGACAGTACGTGCTGTCCTTCACCATCGGCGACGCCAGTAACGCCTGCCGCGGCTCG
CTCATGGTGGAGGCATACGCGGGCCGGGAGTCCACCAAGGTGGCGTACGAGTCGGCGGGG
AAGGGCGGCGTGAAGCGCGCCGTGCTGCCGTTCCGCGCCGCGTCGGCGCGCACCAGGCTC
GTCTTCTTCAGCTCCTTCTACAGCACCAGGAGCGACGACCTCAGCTCGCTATGCGGGCCA
GTGCTTGATGACGTCGTCGTCGTCAGCGGCAATTTTATTGCCCAGATGAATCCTGCTTGC
CACTATTTTACGGTTTTACTGTTATATTCTCGGAACTACTTGGAAAGGAAAAAACCATCT
GAAGCTAAATTTTTCAACAAGCCACTTGAGAACTACCATTACATGGCTATCATATTTGGG
AATCAGCAAGGAACTGGACTGTTTGCAAAATGTACCAGTGATCCCCTAGGTTTCGACACA
TCTGAAAGTGCAGGTACATATGGTGTGGATTATTCTGGAGACTTGGCTGGTCATGAGAGT
AACAATGCAAGTCCAACTCATGATAGTGGAGAATCATTGAACCCAAGTGGTCCAATTCGT
GATGGTGGAGACTCATCTACTCGAAGTGGTGCAAGAAGGAACAGAGGGTGCATGATGATG
GAAGATGAGGATCCATTGATATGCACTGTCACTGAAGCTTTTAAGACTCTTTCAGATGCA
ATCAAGCAGTCAGCACCACAACCACGTTTGATAATCCCACCCAACCTATGGACTATGATG
AAACAGATTCCTGTCTTTGAAAGGAAACATATAGCACACTACTATGGCTACTTGTGTGAG
AATCCAGCCCTTGCTTATGCCTTTCTAGAGATGGGACTAGATGATCAAATGGTATGGGTG
TCTATGTACATCAAGACTCATCTTTCTGATTGA