Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d015651_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:5:103229657:103231129:-1 gene:Zm00001d015651 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:pink scutellum1 description:Lycopene beta cyclase chloroplastic
Sequence	ATGGCCACTACCGCCCTCCTCCTCCGCACTCACCACCATCCCTGCAAGCCGCCGGCGCCG CGCGCGTCCGTACTCTGCCGCGCCACGGCGGGGATGGCTGGGCCGGCGTCGGCCGCGGCG CTGCGGTCCCTGGCCCCGCCCACGCGGCCGGAGCTGCTGTCGCTCGACCTGCCCCGCTAC GACCCAGCGCCCGCCCGCCCCGTGGACCTCGCCGTGGTGGGCGGCGGGCCCGCGGGCCTC GCTGTGGCGCAGCGCGTCGCGGAGGCGGGCCTGTCGGTGTGCGCCATCGACCCGTCCCCC GCGGTCGTGTGGCCCAACAACTACGGCGTGTGGGTGGACGAGTTCGAGGCCATGGGCCTC TCCCACTGCCTCGACACCGTCTGGCCCTCCGCCTCCGTCTTCATCGACGATGGCGGCGCC AAGTCGCTCGACCGCCCCTACGCCCGCGTCGCGCGCCGCAAGCTCAAGTCCACCATGATG GACCGCTGCGTCGCCAACGGCGTCGTCTTCCACCAGGCCAAGGTCGCCAAGGCCGTCCAC TACGACGCCTCGTCCCTCCTCATCTGTGACGACGGCGTCGCCGTCCCGGCAAGCGTCGTG CTCGACGCCACGGGCTTCTCGCGCTGCCTCGTGCAGTACGACAAGCCGTACAACCCGGGG TACCAGGTCGCCTACGGCATCCTCGCCGAGGTCGACGCCCACCCGTTCGACATCGACAAG ATGCTCTTCATGGACTGGCGCGACTCGCACCTCCCCGAAGGGTCGGAGATCAGGGAGCGC AACCGCCGCATCCCCACCTTCCTCTACGCCATGCCCTTCTCCCCCACCAGGATCTTCCTC GAGGAGACGTCCCTGGTCGCGCGCCCGGGGCTCGCCATGGACGACATCCAGGAGCGCATG GCCGCGCGCCTCAGGCACCTGGGTATACGCGTCCGAAGCGTCGAGGAGGACGAGCGCTGC GTCATCCCCATGGGAGGGCCGCTGCCCGTCCTGCCGCAGAGGGTTGTCGGCATCGGCGGC ACGGCAGGGATGGTGCACCCGTCCACGGGCTACATGGTGGCGCGCACGCTTGCCACCGCG CCTATCGTGGCGGACGCCATCGTAAGGTTCCTCGACACCGGCACCGGCAACGGCATGGGT GGCCTGGCAGGGGACGCGCTCTCCGCCGAGGTGTGGAAGCAGCTGTGGCCAGCCAACAGG CGGCGGCAGAGGGAGTTCTTCTGCTTCGGCATGGACGTCCTGCTCAAGCTGGACCTCGAG GGAACGCGGCGGTTCTTCGACGCCTTCTTCGACCTGGAGCCACACTACTGGCACGGTTTC CTGTCATCCAGACTGTTCCTGCCGGAGCTCTTGATGTTCGGCCTCGCACTGTTCGGGAAC GCCTCCAACTCGTCGAGGCTGGAGATCATGGCCAAGGGCACCGTGCCTCTTGGCAAGATG ATTGGCAACTTGATACAGGACAGAGATGGGTGA

Peptide Sequence

PEP ID	Zm00001d015651_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:5:103229657:103231129:-1 gene:Zm00001d015651 transcript:Zm00001d015651_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:pink scutellum1 description:Lycopene beta cyclase chloroplastic
Sequence	MATTALLLRTHHHPCKPPAPRASVLCRATAGMAGPASAAALRSLAPPTRPELLSLDLPRY DPAPARPVDLAVVGGGPAGLAVAQRVAEAGLSVCAIDPSPAVVWPNNYGVWVDEFEAMGL SHCLDTVWPSASVFIDDGGAKSLDRPYARVARRKLKSTMMDRCVANGVVFHQAKVAKAVH YDASSLLICDDGVAVPASVVLDATGFSRCLVQYDKPYNPGYQVAYGILAEVDAHPFDIDK MLFMDWRDSHLPEGSEIRERNRRIPTFLYAMPFSPTRIFLEETSLVARPGLAMDDIQERM AARLRHLGIRVRSVEEDERCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLATA PIVADAIVRFLDTGTGNGMGGLAGDALSAEVWKQLWPANRRRQREFFCFGMDVLLKLDLE GTRRFFDAFFDLEPHYWHGFLSSRLFLPELLMFGLALFGNASNSSRLEIMAKGTVPLGKM IGNLIQDRDG

Transcript Sequence

Transcript ID	Zm00001d015651_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:5:103229657:103231129:-1 gene:Zm00001d015651 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:pink scutellum1 description:Lycopene beta cyclase chloroplastic
Sequence	ATGGCCACTACCGCCCTCCTCCTCCGCACTCACCACCATCCCTGCAAGCCGCCGGCGCCG CGCGCGTCCGTACTCTGCCGCGCCACGGCGGGGATGGCTGGGCCGGCGTCGGCCGCGGCG CTGCGGTCCCTGGCCCCGCCCACGCGGCCGGAGCTGCTGTCGCTCGACCTGCCCCGCTAC GACCCAGCGCCCGCCCGCCCCGTGGACCTCGCCGTGGTGGGCGGCGGGCCCGCGGGCCTC GCTGTGGCGCAGCGCGTCGCGGAGGCGGGCCTGTCGGTGTGCGCCATCGACCCGTCCCCC GCGGTCGTGTGGCCCAACAACTACGGCGTGTGGGTGGACGAGTTCGAGGCCATGGGCCTC TCCCACTGCCTCGACACCGTCTGGCCCTCCGCCTCCGTCTTCATCGACGATGGCGGCGCC AAGTCGCTCGACCGCCCCTACGCCCGCGTCGCGCGCCGCAAGCTCAAGTCCACCATGATG GACCGCTGCGTCGCCAACGGCGTCGTCTTCCACCAGGCCAAGGTCGCCAAGGCCGTCCAC TACGACGCCTCGTCCCTCCTCATCTGTGACGACGGCGTCGCCGTCCCGGCAAGCGTCGTG CTCGACGCCACGGGCTTCTCGCGCTGCCTCGTGCAGTACGACAAGCCGTACAACCCGGGG TACCAGGTCGCCTACGGCATCCTCGCCGAGGTCGACGCCCACCCGTTCGACATCGACAAG ATGCTCTTCATGGACTGGCGCGACTCGCACCTCCCCGAAGGGTCGGAGATCAGGGAGCGC AACCGCCGCATCCCCACCTTCCTCTACGCCATGCCCTTCTCCCCCACCAGGATCTTCCTC GAGGAGACGTCCCTGGTCGCGCGCCCGGGGCTCGCCATGGACGACATCCAGGAGCGCATG GCCGCGCGCCTCAGGCACCTGGGTATACGCGTCCGAAGCGTCGAGGAGGACGAGCGCTGC GTCATCCCCATGGGAGGGCCGCTGCCCGTCCTGCCGCAGAGGGTTGTCGGCATCGGCGGC ACGGCAGGGATGGTGCACCCGTCCACGGGCTACATGGTGGCGCGCACGCTTGCCACCGCG CCTATCGTGGCGGACGCCATCGTAAGGTTCCTCGACACCGGCACCGGCAACGGCATGGGT GGCCTGGCAGGGGACGCGCTCTCCGCCGAGGTGTGGAAGCAGCTGTGGCCAGCCAACAGG CGGCGGCAGAGGGAGTTCTTCTGCTTCGGCATGGACGTCCTGCTCAAGCTGGACCTCGAG GGAACGCGGCGGTTCTTCGACGCCTTCTTCGACCTGGAGCCACACTACTGGCACGGTTTC CTGTCATCCAGACTGTTCCTGCCGGAGCTCTTGATGTTCGGCCTCGCACTGTTCGGGAAC GCCTCCAACTCGTCGAGGCTGGAGATCATGGCCAAGGGCACCGTGCCTCTTGGCAAGATG ATTGGCAACTTGATACAGGACAGAGATGGGTGA