Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d015559_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:5:97471869:97474547:-1 gene:Zm00001d015559 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGGCCGCGGCGGCGCGCCGCGCGATCCCCCTCGTCCTGATCTTCCTCGTCTCGGCGCCC
TTGTACGCGGCCGATGCGTCAGCGGCAGCGGCGGGGGCCGGGGCGAACTCGTCGTCGTTC
CTGCTCGCGGCGGAGCAGACGCAGCGGAAGGACCCGCTCGATGGGCTGAGGTACTACACC
GGCGGGTGGAACATCAGCGACGAGCACTACTGGGCCTCCGTCGGCTTCACCGCGGCGCCG
GTGTTCGCGGCGGCGGCTGTCTGGTTCGTCGTGTTCGGCATTGGGCTGTTCATCGCCGGC
TGCTGCTTCTGCTGCTGCCCGGGCGCCGGCGACGCGTACTCGCGCGCGTGCCTGTGCGTC
TCGCTCGTGCTCCTCCTCGTCGCCACGGCCGCGGCAGCTGTCGGCTGCGCCGTGCTGTAC
GACGGGCAGGGCAGGTTCCACGGCAGCACGGTGGCGACGGTGGACTACGTGGTGCGGCAG
TCGGGCGACACGGTGGCCAACCTGCAGCGCTTCACGGGCTTCCTGGAGACCGCCAAGGCC
GCCGGCGTGGGGCCCGTCGCGCTGCCCGACGACGTCAAGGGGAGGATCGACGACGTCGTG
CGCAAGGTGGGCGCGGCCTCCGACGAGCTCGCCGCCCGCACGGCCAGCAACGCCGCCAAG
ATCCGCGCCGCCCTGGAGACAGTAAGGAAGGTTCTGATAGTTGTTGCGGCGGCGATGCTA
ATCCTCGCTTTTCTTGGCCTTGTGTTCTCGCTGTGTGGGTTGGAATCGATTGTCTACGTG
TTGGTGTTCCTGGGGTGGATCCTGGTTGCAGGGACGCTTGTACTGTGCGGTACTTTCCTC
CTCCTGCACAACGTGGTGGACGACACGTGCGTGGCGATGGGCGAGTGGGTGCAGCACCCG
CAGGCGCGCACGGCGCTGGACGACATCCTGCCGTGCGTCGACACGGCCGCGGCCAAGGAG
GCGCTGAACCGGAGCAAGGAGGTGAACTACCAGCTGGTGGCCGTGCTCAACGCCGCGCTC
ACCAACGTCTCCAACCGCGACTTCCCGCCGCAGGTCCCGCCGCCGCTCAACTACAACCAG
TCGGGCCCGCCCGTGCCGCTGCTCTGCAGCCCCTACGCGGCGGACCTCCGCGACCGCGCG
TGCGCGCCGGGCGAGGTGCCCCTCGACGCCACCACGCCGCGGCAGGCGTGGCAGCGATAC
GTGTGCCGTGGCGTCTCCGCGGACGCCGGGTCGGGGGCCGAGGTGTGCACGTCCCCGGGG
CGCGTCACGCCGTCCATGTACGCGCAGCTCACCGGCGCGGCCGACGTCAGCTACGGGCTG
TACCACTACGGCCCCGCCCTGGTGGCGCTGGCGGACTGCACCTTCGTCAGGGAGACGTTC
CGGTCCATCGGCGACGACCACTGCCCGGGCCTCAGCCGGTACAGCGGCCAGGTGTTCCGG
GGCTTGCTCGCCGCCGCCGTCGCCGTGCTGCTGGCAGTGCTGCTCTGGGTCGTGCACTCG
CGGGAGCGCCGGCGGCGGAGCGAGGCCATGGAGATCCTGTGTCTGGCCTCGTCGCCCTAC
AAGTATCCTCTGGAGGAGAGGGCGTTTCTCAAGAGCCCCGCGAGGCCGTACATGTAA

Peptide Sequence

PEP ID

Zm00001d015559_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:5:97471869:97474547:-1 gene:Zm00001d015559 transcript:Zm00001d015559_T001 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MAAAARRAIPLVLIFLVSAPLYAADASAAAAGAGANSSSFLLAAEQTQRKDPLDGLRYYT
GGWNISDEHYWASVGFTAAPVFAAAAVWFVVFGIGLFIAGCCFCCCPGAGDAYSRACLCV
SLVLLLVATAAAAVGCAVLYDGQGRFHGSTVATVDYVVRQSGDTVANLQRFTGFLETAKA
AGVGPVALPDDVKGRIDDVVRKVGAASDELAARTASNAAKIRAALETVRKVLIVVAAAML
ILAFLGLVFSLCGLESIVYVLVFLGWILVAGTLVLCGTFLLLHNVVDDTCVAMGEWVQHP
QARTALDDILPCVDTAAAKEALNRSKEVNYQLVAVLNAALTNVSNRDFPPQVPPPLNYNQ
SGPPVPLLCSPYAADLRDRACAPGEVPLDATTPRQAWQRYVCRGVSADAGSGAEVCTSPG
RVTPSMYAQLTGAADVSYGLYHYGPALVALADCTFVRETFRSIGDDHCPGLSRYSGQVFR
GLLAAAVAVLLAVLLWVVHSRERRRRSEAMEILCLASSPYKYPLEERAFLKSPARPYM

Transcript Sequence

Transcript ID

Zm00001d015559_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:97471869:97474547:-1 gene:Zm00001d015559 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

CCAACCAAACTGTCAAGTGGTCACCAGCTAGGTTTCCCTTTCCCTTCCGTGGCCCACGGC
TCCGCGTCCTCCTCCGCAGTCGGCCGTTCGAACCCCGACTACTGACGCCGTGTTGACTCG
CTTGCGACAACCAACTGACTCAAGCAGAAACGCACGTCCTCCCGTGGCCATGGCCGCGGC
GGCGCGCCGCGCGATCCCCCTCGTCCTGATCTTCCTCGTCTCGGCGCCCTTGTACGCGGC
CGATGCGTCAGCGGCAGCGGCGGGGGCCGGGGCGAACTCGTCGTCGTTCCTGCTCGCGGC
GGAGCAGACGCAGCGGAAGGACCCGCTCGATGGGCTGAGGTACTACACCGGCGGGTGGAA
CATCAGCGACGAGCACTACTGGGCCTCCGTCGGCTTCACCGCGGCGCCGGTGTTCGCGGC
GGCGGCTGTCTGGTTCGTCGTGTTCGGCATTGGGCTGTTCATCGCCGGCTGCTGCTTCTG
CTGCTGCCCGGGCGCCGGCGACGCGTACTCGCGCGCGTGCCTGTGCGTCTCGCTCGTGCT
CCTCCTCGTCGCCACGGCCGCGGCAGCTGTCGGCTGCGCCGTGCTGTACGACGGGCAGGG
CAGGTTCCACGGCAGCACGGTGGCGACGGTGGACTACGTGGTGCGGCAGTCGGGCGACAC
GGTGGCCAACCTGCAGCGCTTCACGGGCTTCCTGGAGACCGCCAAGGCCGCCGGCGTGGG
GCCCGTCGCGCTGCCCGACGACGTCAAGGGGAGGATCGACGACGTCGTGCGCAAGGTGGG
CGCGGCCTCCGACGAGCTCGCCGCCCGCACGGCCAGCAACGCCGCCAAGATCCGCGCCGC
CCTGGAGACAGTAAGGAAGGTTCTGATAGTTGTTGCGGCGGCGATGCTAATCCTCGCTTT
TCTTGGCCTTGTGTTCTCGCTGTGTGGGTTGGAATCGATTGTCTACGTGTTGGTGTTCCT
GGGGTGGATCCTGGTTGCAGGGACGCTTGTACTGTGCGGTACTTTCCTCCTCCTGCACAA
CGTGGTGGACGACACGTGCGTGGCGATGGGCGAGTGGGTGCAGCACCCGCAGGCGCGCAC
GGCGCTGGACGACATCCTGCCGTGCGTCGACACGGCCGCGGCCAAGGAGGCGCTGAACCG
GAGCAAGGAGGTGAACTACCAGCTGGTGGCCGTGCTCAACGCCGCGCTCACCAACGTCTC
CAACCGCGACTTCCCGCCGCAGGTCCCGCCGCCGCTCAACTACAACCAGTCGGGCCCGCC
CGTGCCGCTGCTCTGCAGCCCCTACGCGGCGGACCTCCGCGACCGCGCGTGCGCGCCGGG
CGAGGTGCCCCTCGACGCCACCACGCCGCGGCAGGCGTGGCAGCGATACGTGTGCCGTGG
CGTCTCCGCGGACGCCGGGTCGGGGGCCGAGGTGTGCACGTCCCCGGGGCGCGTCACGCC
GTCCATGTACGCGCAGCTCACCGGCGCGGCCGACGTCAGCTACGGGCTGTACCACTACGG
CCCCGCCCTGGTGGCGCTGGCGGACTGCACCTTCGTCAGGGAGACGTTCCGGTCCATCGG
CGACGACCACTGCCCGGGCCTCAGCCGGTACAGCGGCCAGGTGTTCCGGGGCTTGCTCGC
CGCCGCCGTCGCCGTGCTGCTGGCAGTGCTGCTCTGGGTCGTGCACTCGCGGGAGCGCCG
GCGGCGGAGCGAGGCCATGGAGATCCTGTGTCTGGCCTCGTCGCCCTACAAGTATCCTCT
GGAGGAGAGGGCGTTTCTCAAGAGCCCCGCGAGGCCGTACATGTAATTTAAACTGACTTA
AACACCGTCCGACAAAATGGGGCGTATTATACCTGGTAGACATTGGTGTTCTCATATGTG
CTAAATTTGGAGAGAGAAAAAATATATGGCGGATGAACTGCTATCACAGAC