Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d015504_T020
CDS Infomation

cds chromosome:B73_RefGen_v4:5:94164592:94167036:1 gene:Zm00001d015504 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein phosphatase 2C isoform gamma

Sequence

ATGGAGTATGTCACATGTATAATCGTTTATCAGGGACCTCACTCTGACTTTGCTGGGCCA
ACATGTGGGAGTACAGCGTGTGTAGCATTAATAAGAAACACCCAACTTGTTGTGGCAAAT
GCTGGTGATTCCCGATGTGTTATTTCAAGGGGTGGGAAGGCATACAATTTATCGAGGGAC
CACAAACCAGAGCTTGCAGCTGAGAGAGAAAGGATAATGAAAGCAGGGGGCTTCATCCAT
ATGGGACGAGTAAATGGAAGTTTAAACTTGTCAAGGGCAATTGGAGACGTGGAATTGAAA
CAGAACAAATTCCTGCCTCCCGAGAAGCAAATTGTGACGGCCAATCCTGATATCAATGTC
GTGGAGCTCTGCGATGATGACGACTTTGTTGTTGTAGCATGTGATGGCATTTGGGACTGC
ATGTCAAGCCAACAGCTGGTGGATTTTATCCACGAGCGTATAAACACGGAGAGCAGCCTG
TCTGCCGTGTGCGAGAGAGTGCTGGACAGATGCCTGGCTCCATCAACGATCGCTGGAGAC
GGGTGCGACAACATGACCATGATCCTGGTGCAGTTCAAAAAACCTGTCGATCGGAACAAG
AAGGCCGAAGCAGCAGGGCAATCTGCCAGCAATGTGGACGAAGCCAAGAGTCGTGTTGCT
GAGGAGTGA

Peptide Sequence

PEP ID

Zm00001d015504_P020
PEP Infomation

pep chromosome:B73_RefGen_v4:5:94164592:94167036:1 gene:Zm00001d015504 transcript:Zm00001d015504_T020 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein phosphatase 2C isoform gamma

Sequence

MEYVTCIIVYQGPHSDFAGPTCGSTACVALIRNTQLVVANAGDSRCVISRGGKAYNLSRD
HKPELAAERERIMKAGGFIHMGRVNGSLNLSRAIGDVELKQNKFLPPEKQIVTANPDINV
VELCDDDDFVVVACDGIWDCMSSQQLVDFIHERINTESSLSAVCERVLDRCLAPSTIAGD
GCDNMTMILVQFKKPVDRNKKAEAAGQSASNVDEAKSRVAEE

Transcript Sequence

Transcript ID

Zm00001d015504_T020
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:94164592:94167036:1 gene:Zm00001d015504 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein phosphatase 2C isoform gamma

Sequence

ATATTAAATTTGGGAATCTCTCATAGATAATGTTTTTGTTAGGGAAGTCATCCTGATTTT
GTCTGTGGTAGATGGCTACTGCTGTTTTCACTTTTCTAAAATAGATGCACATCTGATTTT
CTTGCATTAAAATAAAGGTAATGTCTTTTGAATGCTTGCAAGCTGTGTCAGATGTGAATT
GCAAATAACATCCGAATTTTTGTGTAAAAAGAAATCCATGTGAAGAGAAAACGGGCACCC
AAACATGGTAGCTGCAATGTTACTAATGATGTAATATGAGTTAATTATGAAATGTAATAT
TCTGAAGTCTACGTCTTTATTATCGTTTGAACTAAAAAAATGGTAGATCCAGTGCCGTAG
GCTACCACATGAGAGCTTGTACCATATAAGAGCTTGTTCGGTCTGAGAAATGAATAAACC
GAGACAATCCCACATGAGTGGGGTCTAGGGAAGGGATAAATCGAGATAGGCCTTCTTAGA
TGCGGAGAGACAGCTCTCACCGCTACACCATGCTTTTCCTTACTTTATTATTGTTTAAAC
TATGGTATTAAATTCATGGAGTATGTCACATGTATAATCGTTTATCAGGGACCTCACTCT
GACTTTGCTGGGCCAACATGTGGGAGTACAGCGTGTGTAGCATTAATAAGAAACACCCAA
CTTGTTGTGGCAAATGCTGGTGATTCCCGATGTGTTATTTCAAGGGGTGGGAAGGCATAC
AATTTATCGAGGGACCACAAACCAGAGCTTGCAGCTGAGAGAGAAAGGATAATGAAAGCA
GGGGGCTTCATCCATATGGGACGAGTAAATGGAAGTTTAAACTTGTCAAGGGCAATTGGA
GACGTGGAATTGAAACAGAACAAATTCCTGCCTCCCGAGAAGCAAATTGTGACGGCCAAT
CCTGATATCAATGTCGTGGAGCTCTGCGATGATGACGACTTTGTTGTTGTAGCATGTGAT
GGCATTTGGGACTGCATGTCAAGCCAACAGCTGGTGGATTTTATCCACGAGCGTATAAAC
ACGGAGAGCAGCCTGTCTGCCGTGTGCGAGAGAGTGCTGGACAGATGCCTGGCTCCATCA
ACGATCGCTGGAGACGGGTGCGACAACATGACCATGATCCTGGTGCAGTTCAAAAAACCT
GTCGATCGGAACAAGAAGGCCGAAGCAGCAGGGCAATCTGCCAGCAATGTGGACGAAGCC
AAGAGTCGTGTTGCTGAGGAGTGAAGCATGGCTGGCACTCACCAGGGCGCAACCATTTGC
TTTCATAAGGCAGGTGAAAAAAAGGAACGAAGAAACCTGCAGTGTACGTATCTCAACTGT
ACGTGGCATGCCATGCAAATCCTGCCTAAGTTACCCCGGACAATGGCATTGCCTAGTGCA
GTGGTGGATCTTCAGATCACAACCTTTCTTGTGCCAGCTTTCGGTCATCTCCACTCTCCA
GCCCTCGGAACCATGGCTGAGTCTGTCTATTCTTTGTGTGGTGTGTAGCATTCCTCGTGT
TTTCGTTGTCCAAAATGGTGTCAAATCCAGTTTTTTGTTGCGAGAATGAACCGTGACGTT
AGTGTGTTTTGCTGGCGGTTAGGTGCAAAATACTCGAAACCTGAATTGCCCGCTCGCTAT
TTCGGGTTGTAAGTATATGATGAATCTGATTTTAGTTGCATGGTGTACCCATCTTATCTG
AAAATAATGAAAGATCTGTTTGTGGTTG