Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d015499_T018
CDS Infomation

cds chromosome:B73_RefGen_v4:5:93943669:93959730:1 gene:Zm00001d015499 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein RRC1
Sequence

ATGTGGCCTAGAACAGAAGAGGAACGCAGAAGGCAAAGAAATTGTGGTTTTGTTGCCTTC
ATGAATAGAACAGATGGACAAGCAGCAAAGGATGAAATGCAAGGTGTTATTGTGTATGAC
TATGAACTGAAGATTGGGTGGGGTAAATCTGTTGCTCTTCCGTCACAGGCTTTGCCTGCT
CCTCCTCCAGGACACATGGCAATCAGAAATAAGGAGGGTGGTACAGCTACAGTCATACTT
TCTGGTCCTGGCGGCCCTGCTGTTGCATCTATTAAACCACAAACCTCAGAGCTGGTCCTT
ACACCAAATGTTCCTGATATTGTGGTTGCTCCACCTGATGATGGGCATCTTCGGCATGTG
ATTGACACAATGGCTCTGCACGTACTTGATGGTGGATGTGCTTTTGAACAAGCTGTAATG
GAGAGAGGGCGAGGAAATCCTTTATTTGATTTCTTGTTCAATCTTAAATCTAAAGAGCAC
ACATATTATGTTTGGAGGCTATACTCATTTGCCCAGGGTGATACTCTACAACGATGGAGA
ACAGAACCCTACATCATGATCACAGGAAGTGGAAGATGGGTCCCACCTCCCTTGTCGTCC
AACAGAAGCCCTGAACGTGAAAAGGAATCTACATTTGCTGCTGGTAGAAGCAGGCGTGTT
GAAGTGGAGCGTACATTGACTGACTCACAGCGTGATGAATTTGAGGACATGCTGCGAGCT
TTGACATTAGAGAGGAGCCAAATAAAAGACGCCATGGGATTTGCCTTGGATAATGCTGAT
GCAGCTGGCGAGATTGTTGAGGTTCTTACAGAATCCTTGACACTCAAGGAGACGTCTATT
CCAACAAAGGTTGCTCGGCTTATGCTAGTGTCTGACATCCTTCATAACAGTAGCGCTCCT
GTGAAGAACGCATCTGCATTCCGAACGAAGTTTGAAGCTTCTTTGCCAGATGTTATGGAG
AGCTTTAATGACTTGTATCGCAGTATCACTGGAAGGATTACTGCTGAAGCTCTGAAGGAG
AGGGTTATGAAAGTTCTACAAGTTTGGGCAGACTGGTTCCTGTTTTCTGATGCATTTCTT
AATGGGCTGAGGGCTACTTTTCTTAGATCAGGCAACTCTGGTGTTGTTCCGTTTCACTCG
TTATGTGGTGATGCACCCGAAATTGAAAAGAAAGGTAGCTCTGAGGACGGAAATGATGGA
TTTAAGCTTAATGAAGACGGTGCCTTGGCTACTGGAAAGGCAGCAGCGACAAAGGAGCTA
TTAGGGCTCCCGCTAGCTGAACTTGAGCGCCGCTGTAGACATAATGGCCTCTCTCTGTGC
GGTGGTAAAGAAATGATGGTCGCCAGGCTGCTTAACTTGGAAGAGGCTGAGAAGGAACGA
ATTTACGAGAAGGATGTTGACGTGAAATATGTGCAGGGTGAACAGCATGTGGTTGGAAGA
GAGGACAGTGGTGTGAATGCTCATAGTACTTCAAGGTTTGGTGAAGGTTCTAATGGTGAT
GAATTAGATGTCTCTCGGAACAGTATGAGAGCTGGTAAAGGACGTTCTGGAGGATCTGCT
TCTGCCGAACTTGAATCATTTCCAAGCAAGAAGCCGAAATACGATCCTGTTTTGCCAGCT
TCTAAATGGAGTCGAGAGGATGACATCAGTGACGATGAAGATAGGAAAGGTGGCCGAGGC
TTGGGATTAAGCTATTCGTCCGGAAGCGATATTGCTGATGGTCTCGGAAAGGTCGATACA
ACAGAAGCTAGTACTGACCACACAAGTCATCATCATGATACGATTGTTGATGAAGAGCAC
AGGCAGAAGTTGAGGCAGATTGAAATTTCTGTCATGCAGTACCGTGAATCTCTTGAGGAG
CAGGGTCTGCGTGACTTGGATGAGATTGAGAGGAAGGTTGCCAGCCATCGAAGACGTCTC
CAGTCAGAATATGGTTTATCCACTCCAACTGATGGTGCTAACAGCAGGCGATCTTCTGAA
AGAACATCATCGTCGTCGGAGCGGAAAGAGAGGCATGGCGATGCACATGATCATCCTAGG
AAACGTCGCCGGAGCCAGAGTAGAAGCTGCAGTCCTCCAAGGAAGTCTCAGGAGAGGGAT
CGAGAGCACAATCGCAGTAGGGACCGAGATAGGGTACGCGAGAAAAGTGCAAGCCGAGGG
CGAGACGACCACCACGACAGAAGCCGAGATAGAGAGGACAGGAGAAAGGGGAGGTGA

Peptide Sequence

PEP ID

Zm00001d015499_P018
PEP Infomation

pep chromosome:B73_RefGen_v4:5:93943669:93959730:1 gene:Zm00001d015499 transcript:Zm00001d015499_T018 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein RRC1
Sequence

MWPRTEEERRRQRNCGFVAFMNRTDGQAAKDEMQGVIVYDYELKIGWGKSVALPSQALPA
PPPGHMAIRNKEGGTATVILSGPGGPAVASIKPQTSELVLTPNVPDIVVAPPDDGHLRHV
IDTMALHVLDGGCAFEQAVMERGRGNPLFDFLFNLKSKEHTYYVWRLYSFAQGDTLQRWR
TEPYIMITGSGRWVPPPLSSNRSPEREKESTFAAGRSRRVEVERTLTDSQRDEFEDMLRA
LTLERSQIKDAMGFALDNADAAGEIVEVLTESLTLKETSIPTKVARLMLVSDILHNSSAP
VKNASAFRTKFEASLPDVMESFNDLYRSITGRITAEALKERVMKVLQVWADWFLFSDAFL
NGLRATFLRSGNSGVVPFHSLCGDAPEIEKKGSSEDGNDGFKLNEDGALATGKAAATKEL
LGLPLAELERRCRHNGLSLCGGKEMMVARLLNLEEAEKERIYEKDVDVKYVQGEQHVVGR
EDSGVNAHSTSRFGEGSNGDELDVSRNSMRAGKGRSGGSASAELESFPSKKPKYDPVLPA
SKWSREDDISDDEDRKGGRGLGLSYSSGSDIADGLGKVDTTEASTDHTSHHHDTIVDEEH
RQKLRQIEISVMQYRESLEEQGLRDLDEIERKVASHRRRLQSEYGLSTPTDGANSRRSSE
RTSSSSERKERHGDAHDHPRKRRRSQSRSCSPPRKSQERDREHNRSRDRDRVREKSASRG
RDDHHDRSRDREDRRKGR

Transcript Sequence

Transcript ID

Zm00001d015499_T018
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:93943669:93959730:1 gene:Zm00001d015499 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein RRC1
Sequence

GGTCGATGAGAATTTTCTTTTGAGGACATTTGGTCGGTTTGGACCTATTGCTAGTGTCAA
GATTATGTGGCCTAGAACAGAAGAGGAACGCAGAAGGCAAAGAAATTGTGGTTTTGTTGC
CTTCATGAATAGAACAGATGGACAAGCAGCAAAGGATGAAATGCAAGGTGTTATTGTGTA
TGACTATGAACTGAAGATTGGGTGGGGTAAATCTGTTGCTCTTCCGTCACAGGCTTTGCC
TGCTCCTCCTCCAGGACACATGGCAATCAGAAATAAGGAGGGTGGTACAGCTACAGTCAT
ACTTTCTGGTCCTGGCGGCCCTGCTGTTGCATCTATTAAACCACAAACCTCAGAGCTGGT
CCTTACACCAAATGTTCCTGATATTGTGGTTGCTCCACCTGATGATGGGCATCTTCGGCA
TGTGATTGACACAATGGCTCTGCACGTACTTGATGGTGGATGTGCTTTTGAACAAGCTGT
AATGGAGAGAGGGCGAGGAAATCCTTTATTTGATTTCTTGTTCAATCTTAAATCTAAAGA
GCACACATATTATGTTTGGAGGCTATACTCATTTGCCCAGGGTGATACTCTACAACGATG
GAGAACAGAACCCTACATCATGATCACAGGAAGTGGAAGATGGGTCCCACCTCCCTTGTC
GTCCAACAGAAGCCCTGAACGTGAAAAGGAATCTACATTTGCTGCTGGTAGAAGCAGGCG
TGTTGAAGTGGAGCGTACATTGACTGACTCACAGCGTGATGAATTTGAGGACATGCTGCG
AGCTTTGACATTAGAGAGGAGCCAAATAAAAGACGCCATGGGATTTGCCTTGGATAATGC
TGATGCAGCTGGCGAGATTGTTGAGGTTCTTACAGAATCCTTGACACTCAAGGAGACGTC
TATTCCAACAAAGGTTGCTCGGCTTATGCTAGTGTCTGACATCCTTCATAACAGTAGCGC
TCCTGTGAAGAACGCATCTGCATTCCGAACGAAGTTTGAAGCTTCTTTGCCAGATGTTAT
GGAGAGCTTTAATGACTTGTATCGCAGTATCACTGGAAGGATTACTGCTGAAGCTCTGAA
GGAGAGGGTTATGAAAGTTCTACAAGTTTGGGCAGACTGGTTCCTGTTTTCTGATGCATT
TCTTAATGGGCTGAGGGCTACTTTTCTTAGATCAGGCAACTCTGGTGTTGTTCCGTTTCA
CTCGTTATGTGGTGATGCACCCGAAATTGAAAAGAAAGGTAGCTCTGAGGACGGAAATGA
TGGATTTAAGCTTAATGAAGACGGTGCCTTGGCTACTGGAAAGGCAGCAGCGACAAAGGA
GCTATTAGGGCTCCCGCTAGCTGAACTTGAGCGCCGCTGTAGACATAATGGCCTCTCTCT
GTGCGGTGGTAAAGAAATGATGGTCGCCAGGCTGCTTAACTTGGAAGAGGCTGAGAAGGA
ACGAATTTACGAGAAGGATGTTGACGTGAAATATGTGCAGGGTGAACAGCATGTGGTTGG
AAGAGAGGACAGTGGTGTGAATGCTCATAGTACTTCAAGGTTTGGTGAAGGTTCTAATGG
TGATGAATTAGATGTCTCTCGGAACAGTATGAGAGCTGGTAAAGGACGTTCTGGAGGATC
TGCTTCTGCCGAACTTGAATCATTTCCAAGCAAGAAGCCGAAATACGATCCTGTTTTGCC
AGCTTCTAAATGGAGTCGAGAGGATGACATCAGTGACGATGAAGATAGGAAAGGTGGCCG
AGGCTTGGGATTAAGCTATTCGTCCGGAAGCGATATTGCTGATGGTCTCGGAAAGGTCGA
TACAACAGAAGCTAGTACTGACCACACAAGTCATCATCATGATACGATTGTTGATGAAGA
GCACAGGCAGAAGTTGAGGCAGATTGAAATTTCTGTCATGCAGTACCGTGAATCTCTTGA
GGAGCAGGGTCTGCGTGACTTGGATGAGATTGAGAGGAAGGTTGCCAGCCATCGAAGACG
TCTCCAGTCAGAATATGGTTTATCCACTCCAACTGATGGTGCTAACAGCAGGCGATCTTC
TGAAAGAACATCATCGTCGTCGGAGCGGAAAGAGAGGCATGGCGATGCACATGATCATCC
TAGGAAACGTCGCCGGAGCCAGAGTAGAAGCTGCAGTCCTCCAAGGAAGTCTCAGGAGAG
GGATCGAGAGCACAATCGCAGTAGGGACCGAGATAGGGTACGCGAGAAAAGTGCAAGCCG
AGGGCGAGACGACCACCACGACAGAAGCCGAGATAGAGAGGACAGGAGAAAGGGGAGGTG
ACCGACCCGAAAAACCTCGTCACTATGCACCATTTGCCCTAACCGAAGGGCCCAGGAGCA
TCATTTGAGCTGGGCTACACGCCCACCAGCATCTCCATCGGTAAACATATATTCCGCACC
AGGCAGGTTACCCTGGTCTGCTCCATGCTTCGTCTGCAATAGGAGTTTTTGAGGATTAAG
TTGAGGTTTTGTAAAGAAGACTTGTTCGTTACTTTTTTTGTGGATTATTAAGATATATCC
TATGTGTAGTTTATGCTTAAAATTTAAAACCAATGTTGAATACAGCCAGACCCAGAATTG
TCAG