Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d015493_T006
CDS Infomation	cds chromosome:B73_RefGen_v4:5:93597488:93602463:-1 gene:Zm00001d015493 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:autophagy11b description:Autophagy-related protein 11
Sequence	ATGAGTTCCGGGTCGGCGGTGACAGGCGGTGGTGCGGAGGAGGCGGCGGCGGTGCCGCTG GGGCAGAAGTTGATGGTGCACGTGGCGGAGAACGGCCACACCTTGGAGTTCCAGTGCGGC GGCGACACGCTTGTCGAGGCCATCCAGCACTCCATCCACCACCTCTGTGTCATACCGCCC AGCGACCAGCTCCTCCTCTGCGGCAACACCTCCCTCGACGGCGCCAACGCGCTAGCCTAC TACAAGCTTCCGCGTGACGACCGTGAGGTCTTCCTCTACAACAAGGCCCGCCTCCTTGCG GACTCCCGCCCCCCGGCGCCGGAGTCCATCTACATCCCTGAGCCAAATATTCCACCACCA CCGCCCCGGCCGCAGGACTCATCACCTGTGGGCGCATCTGCAGACCCGGCTCTGAAGGCT CTGGTATCTTATGAAACAAGATTCAGATACCACTTCCAGGTCGCCAATGCGGTGTACCAA TCTAGCTTGGCAAAATTTGAGCTGTGCAGGCGGCTTCTGCGGGAGGGGCAGGTGCAGGAG CGAGCGCTGGACACAGCACGGAGCAACCTAGAGCACACGTTCCGGAAGCTCTCACAGCGG TACTCAGAATTCCTGCGGTGCTTCACGCAGCAGCACCGTTCACATGTTGAGATGCTGGCC AATTTCGAGAGAGATGTGCAGAAGCTGCGTGCTGTTAGGCTGCACCCAGCGCTGCAAAGC GAGGGGAGGCATTGCTTGATGGACCTTCTCAAGGAGAATGACCTGAGGAAACTGGCTGAC GGATGCTTGAGCTCACATAAGAAGTTTGAGGTCAAGGTGTCACAGCTGAAGGCAAACTTC TTGGAGCTGAAGAAGAGGGTGGAAGGCTTATTCAATGCCATGAACTCAGGTGGGTGCAAG GATGTTGAGAAGCTTATAAAGGAGCATCAGGGAGTCATTGGTGACCAGAAGATCATCATG CAGGCTCTAAGTAAAGATGTGGACACCTCAAAGAAGCTTGTCGATGACTGCTCAAGTTGC CAGCTATCTGCTTCTCTCCGTCCTCATGATGCAGTCTCAGCCGTTGGCCGTATCTATGAA ATACATGAAAATGATAACTTGCCCAGCATACAGAATTTTGATCACAGTCTAACAAAATTG CTTGAGAAATGCAAGGACAAGAAGAATGAAATGAATACTTTGGTCCATGTTTGCATGCAA AGAGTAAAATCTTCTCAGATTAGCATCAAAGGCATGATGAGTGAGCTCATTGCGTTCCAA GAGGTGATGGGTCATCAAGAAGATTTTGATAATCTGAAAATAGTCAGTGGCTTGGGTTAT GCATATAGAGCTTGTGTTGCCGAGGTAGCCAGGAGGAAATCATATTTTAAGCTGTATACT GGATTTGCTGGAAAACATGCCGAAAAGTTGGCAATCGAGTGTCAAAACGAGAAAACAAGA CGAGAGGATTTCCATAGGACATGGAGCAGGTACATTCCAGATGGTGTCATGTGTTCCATG GGGCTCTTTGATTCTCCAAGCCAGTGTGATGTAAAAGTCGCTCCTTTTGATTGTGATCTT CTTCCCATTGATGTTGATGATGTGGAAAAGCTTGCTCCCCAGTCTATACTGGGGTCTTTT CTGAAATCTGAGAGATCACAGATAGCAAAGCCTTTGCTAAGCAATTCTAGTATCAGTGGA AATTTGAACAAATCTGAGCAAAATTCTCTGAGCGCTGACGATAAGATGGATTTCCAAGAT TTTCTGGGGGGCTATGATACTATTGACATTGCAGGAACTAGTAAGTTAGAAGTGGAAAAT GCCAGGTTAAAAGCAGAACTTGCTTCTGCAATTGCAGTTCTCTGCAATATCAGTGCTGAA TATGGATACGAGTCTATTGACGAAGGGCAAATTGATGCTGCATTGAAAAAAGCAAGGGAA AAAACAGCTGAGGCACTTGCTGCAAAGGATGAGTTTGCTTACCAGCTTCAGTCATTGCTC ACTGCAAAGCAGGAAAAATGCCTGGCATATGAGAAGCGGATCCAGGATCTTGAGGAACGC TTAGCCAACCAGTACATTAAAGGTCACATGGTGTCAGGAAGCAAAGACACTTCTGGTTCC CTGCTTTCAGCATTTAAAAGTAATGACTGCAACCTGGATGTATCTGGAGGAAGGCAAACC CAAATACGTGATGAATCAAGTGTGGCCATGGATGAGGCCTCTTCAACATCTGAACAGCCA TCTAAACAAGCAGAAGGTGGCGATGAGAATATGACTGACATTTCAGGTGCACTGAACTTG CAGTTGCTTGATTCAGCAGCATGTACTAATCTGGATGCTTTCATGACAGAATTGCCACGT GATAATGAACATAAGATTGTAAACATTGATAAGGAAGGGCACATGTTGACACAACTTACT ATGGCTGATACTTCTGATGTCCGTATAGAAGATCCTCTTAGCATCTTAAACTCAAGAACT AATGAGCATCACACCTTAGAGTTGAGGAATAAGGAGCTCCTTGTGTCAGAGCTGCAAAGT ACCCTAGATCAAAAGTCAAAGCAGTTGGGTGAAACTGAAATTAAACTTAGCGCTATGATG GATGAGGTTAACTCCCTGATGAAAGAACTTGAACAAATCCGGGGTCTTCTTGATGAATCT CAGATGAATTGTGCACATCTTGAAAACTGTTTACATGAAGCAAGAGAAGAGGCCCGAACA AACAAATGCTCATCTGACAGAAGGGCTGTTGAGTATGATGCTCTGCGGTCATCTGCTTTG AGGATACATGGTTTATTCGAAAGGCTAAATAATTGTGTCACTGCACCAGGCATGACTGGT TTTGCAGAGTCACTGCGTTCTCTGGCTCTTTCCTTGGCAAGCTCTGTAAAGAAGGACGAA GCTGATACCACTGTACAGTTTCAACAATGCATCAAGATCCTGGCAGACAAAGTTTATTTA CTGACACGACAGAGTGCTGAGCTGCTAGAACGCTATTCAGCTATGCAGGCGGTACATGGA GATATCACAAAAGAGTTGGATTTGAAGAAAGTGCTGATTAAGAATCTCTACAATAAACTT CAACAAGAAAAACAGGCCAGCAAGGAGAAGATATCATTTGGTCGGTTTGAAGTCCATGAG CTTGCTGTCTTTTTTCGAAACTCTGCTGGGCACTACGAGGCGATCAACCGGAACTACCCA AACTACTTTCTGTCTGAGGAATCTGTCGCCTTGTTCACCGAGCACCACCTGCGGTACCCA GCGTACATAATCGGGCAGATCGTTCACATCGAGCGGCACATAGCGCACCCAGGCCAAATG AGAGGAGCTCCACGCCCTGATAGCAGTGGCGGCCGTCGGTCGCCCGCAGCCATGCTCACC CCCTACAACCTACCTGGGGGCCGTGAGTACTTCGTGGTGACTGTTGCCATGCTGCCTAAT GCTGCCCGTTGA

Peptide Sequence

PEP ID	Zm00001d015493_P006
PEP Infomation	pep chromosome:B73_RefGen_v4:5:93597488:93602463:-1 gene:Zm00001d015493 transcript:Zm00001d015493_T006 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:autophagy11b description:Autophagy-related protein 11
Sequence	MSSGSAVTGGGAEEAAAVPLGQKLMVHVAENGHTLEFQCGGDTLVEAIQHSIHHLCVIPP SDQLLLCGNTSLDGANALAYYKLPRDDREVFLYNKARLLADSRPPAPESIYIPEPNIPPP PPRPQDSSPVGASADPALKALVSYETRFRYHFQVANAVYQSSLAKFELCRRLLREGQVQE RALDTARSNLEHTFRKLSQRYSEFLRCFTQQHRSHVEMLANFERDVQKLRAVRLHPALQS EGRHCLMDLLKENDLRKLADGCLSSHKKFEVKVSQLKANFLELKKRVEGLFNAMNSGGCK DVEKLIKEHQGVIGDQKIIMQALSKDVDTSKKLVDDCSSCQLSASLRPHDAVSAVGRIYE IHENDNLPSIQNFDHSLTKLLEKCKDKKNEMNTLVHVCMQRVKSSQISIKGMMSELIAFQ EVMGHQEDFDNLKIVSGLGYAYRACVAEVARRKSYFKLYTGFAGKHAEKLAIECQNEKTR REDFHRTWSRYIPDGVMCSMGLFDSPSQCDVKVAPFDCDLLPIDVDDVEKLAPQSILGSF LKSERSQIAKPLLSNSSISGNLNKSEQNSLSADDKMDFQDFLGGYDTIDIAGTSKLEVEN ARLKAELASAIAVLCNISAEYGYESIDEGQIDAALKKAREKTAEALAAKDEFAYQLQSLL TAKQEKCLAYEKRIQDLEERLANQYIKGHMVSGSKDTSGSLLSAFKSNDCNLDVSGGRQT QIRDESSVAMDEASSTSEQPSKQAEGGDENMTDISGALNLQLLDSAACTNLDAFMTELPR DNEHKIVNIDKEGHMLTQLTMADTSDVRIEDPLSILNSRTNEHHTLELRNKELLVSELQS TLDQKSKQLGETEIKLSAMMDEVNSLMKELEQIRGLLDESQMNCAHLENCLHEAREEART NKCSSDRRAVEYDALRSSALRIHGLFERLNNCVTAPGMTGFAESLRSLALSLASSVKKDE ADTTVQFQQCIKILADKVYLLTRQSAELLERYSAMQAVHGDITKELDLKKVLIKNLYNKL QQEKQASKEKISFGRFEVHELAVFFRNSAGHYEAINRNYPNYFLSEESVALFTEHHLRYP AYIIGQIVHIERHIAHPGQMRGAPRPDSSGGRRSPAAMLTPYNLPGGREYFVVTVAMLPN AAR

Transcript Sequence

Transcript ID	Zm00001d015493_T006
Transcript Infomation	cdna chromosome:B73_RefGen_v4:5:93597488:93602463:-1 gene:Zm00001d015493 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:autophagy11b description:Autophagy-related protein 11
Sequence	CCATGTTAATGATACTGCTCGTCGTCAATCTCCCCTCTCACACGGAGCAGTAGAAAAATC CCATCCATCCCGGTTTCTTATTCAGCCTAGTCCCTTCGGAGACCGAATCAAACCCATTCG TGATCGGAGGCTATCCCGTCGGAGAGGTTAAAGAGTTCGGTGTTTCGTGTTTGGTGGTAC GGTAGAACTGTAGATTAATCTGTACTGTGTGAAGAAAAAGAAGAAGAAGATTCGGTTTTG GAGTGGAATTGTGGGCTGTAGTCGAATCGCGAGGAAGATGAGTTCCGGGTCGGCGGTGAC AGGCGGTGGTGCGGAGGAGGCGGCGGCGGTGCCGCTGGGGCAGAAGTTGATGGTGCACGT GGCGGAGAACGGCCACACCTTGGAGTTCCAGTGCGGCGGCGACACGCTTGTCGAGGCCAT CCAGCACTCCATCCACCACCTCTGTGTCATACCGCCCAGCGACCAGCTCCTCCTCTGCGG CAACACCTCCCTCGACGGCGCCAACGCGCTAGCCTACTACAAGCTTCCGCGTGACGACCG TGAGGTCTTCCTCTACAACAAGGCCCGCCTCCTTGCGGACTCCCGCCCCCCGGCGCCGGA GTCCATCTACATCCCTGAGCCAAATATTCCACCACCACCGCCCCGGCCGCAGGACTCATC ACCTGTGGGCGCATCTGCAGACCCGGCTCTGAAGGCTCTGGTATCTTATGAAACAAGATT CAGATACCACTTCCAGGTCGCCAATGCGGTGTACCAATCTAGCTTGGCAAAATTTGAGCT GTGCAGGCGGCTTCTGCGGGAGGGGCAGGTGCAGGAGCGAGCGCTGGACACAGCACGGAG CAACCTAGAGCACACGTTCCGGAAGCTCTCACAGCGGTACTCAGAATTCCTGCGGTGCTT CACGCAGCAGCACCGTTCACATGTTGAGATGCTGGCCAATTTCGAGAGAGATGTGCAGAA GCTGCGTGCTGTTAGGCTGCACCCAGCGCTGCAAAGCGAGGGGAGGCATTGCTTGATGGA CCTTCTCAAGGAGAATGACCTGAGGAAACTGGCTGACGGATGCTTGAGCTCACATAAGAA GTTTGAGGTCAAGGTGTCACAGCTGAAGGCAAACTTCTTGGAGCTGAAGAAGAGGGTGGA AGGCTTATTCAATGCCATGAACTCAGGTGGGTGCAAGGATGTTGAGAAGCTTATAAAGGA GCATCAGGGAGTCATTGGTGACCAGAAGATCATCATGCAGGCTCTAAGTAAAGATGTGGA CACCTCAAAGAAGCTTGTCGATGACTGCTCAAGTTGCCAGCTATCTGCTTCTCTCCGTCC TCATGATGCAGTCTCAGCCGTTGGCCGTATCTATGAAATACATGAAAATGATAACTTGCC CAGCATACAGAATTTTGATCACAGTCTAACAAAATTGCTTGAGAAATGCAAGGACAAGAA GAATGAAATGAATACTTTGGTCCATGTTTGCATGCAAAGAGTAAAATCTTCTCAGATTAG CATCAAAGGCATGATGAGTGAGCTCATTGCGTTCCAAGAGGTGATGGGTCATCAAGAAGA TTTTGATAATCTGAAAATAGTCAGTGGCTTGGGTTATGCATATAGAGCTTGTGTTGCCGA GGTAGCCAGGAGGAAATCATATTTTAAGCTGTATACTGGATTTGCTGGAAAACATGCCGA AAAGTTGGCAATCGAGTGTCAAAACGAGAAAACAAGACGAGAGGATTTCCATAGGACATG GAGCAGGTACATTCCAGATGGTGTCATGTGTTCCATGGGGCTCTTTGATTCTCCAAGCCA GTGTGATGTAAAAGTCGCTCCTTTTGATTGTGATCTTCTTCCCATTGATGTTGATGATGT GGAAAAGCTTGCTCCCCAGTCTATACTGGGGTCTTTTCTGAAATCTGAGAGATCACAGAT AGCAAAGCCTTTGCTAAGCAATTCTAGTATCAGTGGAAATTTGAACAAATCTGAGCAAAA TTCTCTGAGCGCTGACGATAAGATGGATTTCCAAGATTTTCTGGGGGGCTATGATACTAT TGACATTGCAGGAACTAGTAAGTTAGAAGTGGAAAATGCCAGGTTAAAAGCAGAACTTGC TTCTGCAATTGCAGTTCTCTGCAATATCAGTGCTGAATATGGATACGAGTCTATTGACGA AGGGCAAATTGATGCTGCATTGAAAAAAGCAAGGGAAAAAACAGCTGAGGCACTTGCTGC AAAGGATGAGTTTGCTTACCAGCTTCAGTCATTGCTCACTGCAAAGCAGGAAAAATGCCT GGCATATGAGAAGCGGATCCAGGATCTTGAGGAACGCTTAGCCAACCAGTACATTAAAGG TCACATGGTGTCAGGAAGCAAAGACACTTCTGGTTCCCTGCTTTCAGCATTTAAAAGTAA TGACTGCAACCTGGATGTATCTGGAGGAAGGCAAACCCAAATACGTGATGAATCAAGTGT GGCCATGGATGAGGCCTCTTCAACATCTGAACAGCCATCTAAACAAGCAGAAGGTGGCGA TGAGAATATGACTGACATTTCAGGTGCACTGAACTTGCAGTTGCTTGATTCAGCAGCATG TACTAATCTGGATGCTTTCATGACAGAATTGCCACGTGATAATGAACATAAGATTGTAAA CATTGATAAGGAAGGGCACATGTTGACACAACTTACTATGGCTGATACTTCTGATGTCCG TATAGAAGATCCTCTTAGCATCTTAAACTCAAGAACTAATGAGCATCACACCTTAGAGTT GAGGAATAAGGAGCTCCTTGTGTCAGAGCTGCAAAGTACCCTAGATCAAAAGTCAAAGCA GTTGGGTGAAACTGAAATTAAACTTAGCGCTATGATGGATGAGGTTAACTCCCTGATGAA AGAACTTGAACAAATCCGGGGTCTTCTTGATGAATCTCAGATGAATTGTGCACATCTTGA AAACTGTTTACATGAAGCAAGAGAAGAGGCCCGAACAAACAAATGCTCATCTGACAGAAG GGCTGTTGAGTATGATGCTCTGCGGTCATCTGCTTTGAGGATACATGGTTTATTCGAAAG GCTAAATAATTGTGTCACTGCACCAGGCATGACTGGTTTTGCAGAGTCACTGCGTTCTCT GGCTCTTTCCTTGGCAAGCTCTGTAAAGAAGGACGAAGCTGATACCACTGTACAGTTTCA ACAATGCATCAAGATCCTGGCAGACAAAGTTTATTTACTGACACGACAGAGTGCTGAGCT GCTAGAACGCTATTCAGCTATGCAGGCGGTACATGGAGATATCACAAAAGAGTTGGATTT GAAGAAAGTGCTGATTAAGAATCTCTACAATAAACTTCAACAAGAAAAACAGGCCAGCAA GGAGAAGATATCATTTGGTCGGTTTGAAGTCCATGAGCTTGCTGTCTTTTTTCGAAACTC TGCTGGGCACTACGAGGCGATCAACCGGAACTACCCAAACTACTTTCTGTCTGAGGAATC TGTCGCCTTGTTCACCGAGCACCACCTGCGGTACCCAGCGTACATAATCGGGCAGATCGT TCACATCGAGCGGCACATAGCGCACCCAGGCCAAATGAGAGGAGCTCCACGCCCTGATAG CAGTGGCGGCCGTCGGTCGCCCGCAGCCATGCTCACCCCCTACAACCTACCTGGGGGCCG TGAGTACTTCGTGGTGACTGTTGCCATGCTGCCTAATGCTGCCCGTTGAAACAAAACACC TTCCTGATCCTGCCTGACAATGGTCTGCTGAAATGATGGGGGAAAACTTTCAACTGTATA TATACTGAAATTTATTACTATACTCTCAATTCTCAGTTGCTTCCTCAAGTTATGTTTGT