Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d015474_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:5:92115423:92119193:-1 gene:Zm00001d015474 gene_biotype:protein_coding transcript_biotype:protein_coding description:Vacuolar import/degradation Vid27-related protein
Sequence

ATGGGGGGCTCGCACAGCCGCGAGGACCTCGACCTATCCGATTCCGACTCCGACGACGCC
GAGTCCCGGGCCTCCGACAATTCCTCCGACTACGGCACGCCTACCCCGGCATCTGCCTCC
TCCAAGTTGGCCAGCGGCGCAGGGGCGGCGGCCACGCCCGCCTCCATCGACGCCATCGAC
CGCCACCTCCGCCAGCTCCACCTCAAGTACAACGAGCCCATCTCCCCGAACCCTAGCCCC
GGGCTCACCCTCAGCGCCAACCCCGCCGCGCTCAACGCCGTCAAGCTATACCTCCACATC
GGCGGCTCCTCCCCCTCCGCCAAGTGGATCGTCTCCGACAGCCTCGCCGCCGCCTCCTTC
GTACGCACCGGCGACGACGAGGACGACGACGCGCCCGCCGGCGGGCCGTGGTGCCTCGTC
GTGGGCTCGAAGATCCAGGCCAGGGTCGGGCCCGAGCTGCAGCTCAAGACCTTCCCCGCG
CAGCGTCGGGTGGATTTCGTCGCCGACGGCGTATGGGCGCTTAAGTTCCGCCACGCTGAC
GGCTTCGGTGACTTCTGCGCGAAGTACCACAGCTGTATGTTTGAGAACAGCTACGGCGTC
GCCGCCACGGACGAGGGCCGCGCCAAGGTGTTTGGGAAGGACTTCGCGGCGTGGGCGCGC
CCGGAGGACGGCGACGAGTCGATATGGGAGGACGCCACCGACGGCTTCTTCTCTCCGGGT
CCCAAGGGCAGCCCGATGCCCCCGCGGACACCAGTACTGAAGCCTTTGTTAGAGGATCTG
CGCGAGTTTGAGGAGCCTGTTGAGGAAGGCAGCGGAATTAACAGTCTTGCGCTTGGCGCA
CTGGATAACAGTTTCCTCGTTGGAGACAAAGGCATTGAGGTCGTGAGGAATTTCGAGCAT
GGGATACACGGCAAGGGCATGTCCGTGAAGTTTTCTGGAGGGAGCACAAACTTCTCGACA
CCGAAAAAGGCTCTTCTTATGCGGGCCGAGACTAACATGCTCCTGATGAGCCCAGCCACT
GATGGAAAGCCACATGCCAAGGGGGTGCATCAATTTGATATCGAGACGGGGAAGGTGGTT
TCAGAATGGAAGTTTGAGAAGGATGGAGCGGATATTAACATGAGGGATATCACGAATGAT
AGCAAAGGTGCCCAGTTGGATCCATCCGAATCCACCTTCTTGGGACTGGATGACAACCGG
TTGTGCCGGTGGGATATGAGAGATCGCAGGGGCATTGTACAGAACTTGGCAAGTGCAACT
GAGTCGCCAGTATTGCAATGGACTCAGGGGCATCAGTTTTCCCGGGGGACAAACTTCCAG
TGCTTCGCTTCAACTGGTGATGGTTCGATTGTTGTTGGATCATTGGATGGGAAGATCCGC
TTGTATTCTAAGAGTTCTATGAGGTGA

Peptide Sequence

PEP ID

Zm00001d015474_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:5:92115423:92119193:-1 gene:Zm00001d015474 transcript:Zm00001d015474_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Vacuolar import/degradation Vid27-related protein
Sequence

MGGSHSREDLDLSDSDSDDAESRASDNSSDYGTPTPASASSKLASGAGAAATPASIDAID
RHLRQLHLKYNEPISPNPSPGLTLSANPAALNAVKLYLHIGGSSPSAKWIVSDSLAAASF
VRTGDDEDDDAPAGGPWCLVVGSKIQARVGPELQLKTFPAQRRVDFVADGVWALKFRHAD
GFGDFCAKYHSCMFENSYGVAATDEGRAKVFGKDFAAWARPEDGDESIWEDATDGFFSPG
PKGSPMPPRTPVLKPLLEDLREFEEPVEEGSGINSLALGALDNSFLVGDKGIEVVRNFEH
GIHGKGMSVKFSGGSTNFSTPKKALLMRAETNMLLMSPATDGKPHAKGVHQFDIETGKVV
SEWKFEKDGADINMRDITNDSKGAQLDPSESTFLGLDDNRLCRWDMRDRRGIVQNLASAT
ESPVLQWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKSSMR

Transcript Sequence

Transcript ID

Zm00001d015474_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:92115423:92119193:-1 gene:Zm00001d015474 gene_biotype:protein_coding transcript_biotype:protein_coding description:Vacuolar import/degradation Vid27-related protein
Sequence

CCAAAGGGCCCCATTTCTCCCATCACCTCTCCCAAATTCAAATTCCCGCACGCTCCTCCT
CCCCTCCCCCAATCTCACCTCCTCGCCGAAACCCTATCAGCCTCCGCCGCCATGGGGGGC
TCGCACAGCCGCGAGGACCTCGACCTATCCGATTCCGACTCCGACGACGCCGAGTCCCGG
GCCTCCGACAATTCCTCCGACTACGGCACGCCTACCCCGGCATCTGCCTCCTCCAAGTTG
GCCAGCGGCGCAGGGGCGGCGGCCACGCCCGCCTCCATCGACGCCATCGACCGCCACCTC
CGCCAGCTCCACCTCAAGTACAACGAGCCCATCTCCCCGAACCCTAGCCCCGGGCTCACC
CTCAGCGCCAACCCCGCCGCGCTCAACGCCGTCAAGCTATACCTCCACATCGGCGGCTCC
TCCCCCTCCGCCAAGTGGATCGTCTCCGACAGCCTCGCCGCCGCCTCCTTCGTACGCACC
GGCGACGACGAGGACGACGACGCGCCCGCCGGCGGGCCGTGGTGCCTCGTCGTGGGCTCG
AAGATCCAGGCCAGGGTCGGGCCCGAGCTGCAGCTCAAGACCTTCCCCGCGCAGCGTCGG
GTGGATTTCGTCGCCGACGGCGTATGGGCGCTTAAGTTCCGCCACGCTGACGGCTTCGGT
GACTTCTGCGCGAAGTACCACAGCTGTATGTTTGAGAACAGCTACGGCGTCGCCGCCACG
GACGAGGGCCGCGCCAAGGTGTTTGGGAAGGACTTCGCGGCGTGGGCGCGCCCGGAGGAC
GGCGACGAGTCGATATGGGAGGACGCCACCGACGGCTTCTTCTCTCCGGGTCCCAAGGGC
AGCCCGATGCCCCCGCGGACACCAGTACTGAAGCCTTTGTTAGAGGATCTGCGCGAGTTT
GAGGAGCCTGTTGAGGAAGGCAGCGGAATTAACAGTCTTGCGCTTGGCGCACTGGATAAC
AGTTTCCTCGTTGGAGACAAAGGCATTGAGGTCGTGAGGAATTTCGAGCATGGGATACAC
GGCAAGGGCATGTCCGTGAAGTTTTCTGGAGGGAGCACAAACTTCTCGACACCGAAAAAG
GCTCTTCTTATGCGGGCCGAGACTAACATGCTCCTGATGAGCCCAGCCACTGATGGAAAG
CCACATGCCAAGGGGGTGCATCAATTTGATATCGAGACGGGGAAGGTGGTTTCAGAATGG
AAGTTTGAGAAGGATGGAGCGGATATTAACATGAGGGATATCACGAATGATAGCAAAGGT
GCCCAGTTGGATCCATCCGAATCCACCTTCTTGGGACTGGATGACAACCGGTTGTGCCGG
TGGGATATGAGAGATCGCAGGGGCATTGTACAGAACTTGGCAAGTGCAACTGAGTCGCCA
GTATTGCAATGGACTCAGGGGCATCAGTTTTCCCGGGGGACAAACTTCCAGTGCTTCGCT
TCAACTGGTGATGGTTCGATTGTTGTTGGATCATTGGATGGGAAGATCCGCTTGTATTCT
AAGAGTTCTATGAGGTGACAGAGAACGGGAAGCAGGAGCGGCATCTAGTGGCCACGGTGG
GGAAGTACAGCGTGGTGTGGAACTTCTTGCAGGTGAAGAACAGCCACCACGAGTGCTACC
AGTACCAGGAGGGGCTTAAGACCTGCTATTGCTACAAGGTGATCCCCAAGGACGAGTCGA
TTGTGGCCAGCCGCTTTATGCACGACAGGTATTCGGTCAGCGACTCCCCGGAGGCTCCAC
TGGTGGTGGCTACCCCTATGATGGTCACCTCCTTCAGCATATCAAGCGGTCACTAGCTCT
GTGCTGCGCCTATGAAGCTCAACCTCCTTCAGCATATCAAGCAGTCACTGGCTCCGTGCT
GCTAACTTCTCAGCATGATTGCTAGGGTCGGTTGATTGCTTCTAATGTTGGGGTGTAACA
TCATACTAATAGATGAATCTTGTTTTGTTTCCTTTTCTTGGTGGACTATATATG