Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d015459_T004
CDS Infomation	cds chromosome:B73_RefGen_v4:5:91459423:91463857:-1 gene:Zm00001d015459 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:coumarate ligase1 description:4-coumarate--CoA ligase 1
Sequence	ATGGGTTCCGTAGACGCGGCGATCGCGGTGCCGGTGCCGGCGGCGGAGGAGAAGGCGGTG GAGGAGAAGGCGGTGGTGTTCCGGTCCAAGCTCCCCGACATCGAGATCGACAGCAGCATG GCGCTGCACACCTACTGCTTCGGGAAGATGGGTGAGGTGGCGGAGCGGGCGTGCCTGGTC GACGGGCTGACGGGCGCGTCGTACACGTACGCGGAGGTGGAGTCCCTGTCCCGGCGCGCC GCGTCGGGGCTGCGCGCCATGGGGGTGGGCAAGGGCGACGTGGTGATGAGCCTGCTCCGC AACTGCCCCGAGTTCGCCTTCACCTTCCTGGGCGCCGCCCGCCTGGGCGCCGCCACCACC ACGGCCAACCCGTTCTACACCCCGCACGAGGTGCACCGCCAGGCGGAGGCGGCCGGCGCC CGGCTCATCGTGACCGAGGCCTGCGCCGTGGAGAAGGTGCGGGAGTTCGCGGCGGAGCGG GGCATCCCCGTGGTCACCGTCGACGGGCGCTTCGACGGCTGCGTGGAGTTCGCCGAGCTG ATCGCGGCCGAGGAGCTGGAGGCCGACGCCGACATCCACCCCGACGACGTCGTCGCGCTG CCCTACTCCTCCGGCACCACCGGGCTGCCCAAGGGCGTCATGCTCACCCACCGCAGCCTC ATCACCAGCGTCGCGCAGCAGGTTGATGGCGAGAACCCGAACCTGTACTTCCGCAAGGAC GACGTGGTGCTGTGCCTGCTGCCGCTGTTCCACATCTACTCGCTGAACTCGGTGCTGCTG GCCGGCCTGCGCGCGGGCTCCACCATCGTGATCATGCGCAAGTTCGACCTGGGCGCGCTG GTGGACCTGGTGCGCAGGTACGTGATCACCATCGCGCCCTTCGTGCCGCCCATCGTGGTG GAGATCGCCAAGAGCCCCCGCGTGACCGCCGGCGACCTCGCGTCCATCCGCATGGTCATG TCCGGCGCCGCGCCCATGGGCAAGGAGCTCCAGGACGCCTTCATGGCCAAGATTCCCAAT GCCGTGCTCGGGCAGGGGTACGGGATGACGGAGGCAGGCCCCGTGCTGGCGATGTGCCTG GCCTTCGCCAAGGAGCCGTACCCGGTCAAGTCCGGGTCGTGCGGCACCGTGGTGCGGAAC GCGGAGCTGAAGATCGTCGACCCCGACACCGGCGCCGCCCTCGGCCGGAACCAGCCCGGC GAGATCTGCATCCGCGGGGAGCAGATCATGAAAGGTGCGCCGCACACCGCCCCAGCCGTT GACTTGTCATCTCATTTCTTTGCAGTTGCAGCTGTAGGCTGTATAGCGCTCGTGTTCGCA AAATATGGCCATCTATCCTTCGAATTCGAAGCATCACTTTCACATGCCATTAGCGCCACC AGCCAACCAAGCTGCGGGCACGCCACGCCTCTGACGCCGTCCTGGCGCTTGAGGCGACCT CGGCGCACTGCCACGTGGGCCAATGTGGTGCTCGTGCGCGCGTGCACCGCCACGCGGGGC CCCGCGTGGCTTGGGTACAGGTTGGTGACATGGACAAAATTTCCTGTTGGTCCGAGTACT TTGGCTGCAAAGAATCCGTTTGGTCCCTGCGGTTAG

Peptide Sequence

PEP ID	Zm00001d015459_P004
PEP Infomation	pep chromosome:B73_RefGen_v4:5:91459423:91463857:-1 gene:Zm00001d015459 transcript:Zm00001d015459_T004 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:coumarate ligase1 description:4-coumarate--CoA ligase 1
Sequence	MGSVDAAIAVPVPAAEEKAVEEKAVVFRSKLPDIEIDSSMALHTYCFGKMGEVAERACLV DGLTGASYTYAEVESLSRRAASGLRAMGVGKGDVVMSLLRNCPEFAFTFLGAARLGAATT TANPFYTPHEVHRQAEAAGARLIVTEACAVEKVREFAAERGIPVVTVDGRFDGCVEFAEL IAAEELEADADIHPDDVVALPYSSGTTGLPKGVMLTHRSLITSVAQQVDGENPNLYFRKD DVVLCLLPLFHIYSLNSVLLAGLRAGSTIVIMRKFDLGALVDLVRRYVITIAPFVPPIVV EIAKSPRVTAGDLASIRMVMSGAAPMGKELQDAFMAKIPNAVLGQGYGMTEAGPVLAMCL AFAKEPYPVKSGSCGTVVRNAELKIVDPDTGAALGRNQPGEICIRGEQIMKGAPHTAPAV DLSSHFFAVAAVGCIALVFAKYGHLSFEFEASLSHAISATSQPSCGHATPLTPSWRLRRP RRTATWANVVLVRACTATRGPAWLGYRLVTWTKFPVGPSTLAAKNPFGPCG

Transcript Sequence

Transcript ID	Zm00001d015459_T004
Transcript Infomation	cdna chromosome:B73_RefGen_v4:5:91459423:91463857:-1 gene:Zm00001d015459 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:coumarate ligase1 description:4-coumarate--CoA ligase 1
Sequence	AGGAGATCAGAGCCCCGGCGAGGTCGCACCGCACCAGCCATCGTCTCCTTCCTTCCTTCC TATACTACCATCCAACCAGCTGCCCAGCGCAACGTTACCTGCCCGACATCCGACAAGCCA GTCCATCCGGCAGCGAGCAAAGGTCTGAGATGGGTTCCGTAGACGCGGCGATCGCGGTGC CGGTGCCGGCGGCGGAGGAGAAGGCGGTGGAGGAGAAGGCGGTGGTGTTCCGGTCCAAGC TCCCCGACATCGAGATCGACAGCAGCATGGCGCTGCACACCTACTGCTTCGGGAAGATGG GTGAGGTGGCGGAGCGGGCGTGCCTGGTCGACGGGCTGACGGGCGCGTCGTACACGTACG CGGAGGTGGAGTCCCTGTCCCGGCGCGCCGCGTCGGGGCTGCGCGCCATGGGGGTGGGCA AGGGCGACGTGGTGATGAGCCTGCTCCGCAACTGCCCCGAGTTCGCCTTCACCTTCCTGG GCGCCGCCCGCCTGGGCGCCGCCACCACCACGGCCAACCCGTTCTACACCCCGCACGAGG TGCACCGCCAGGCGGAGGCGGCCGGCGCCCGGCTCATCGTGACCGAGGCCTGCGCCGTGG AGAAGGTGCGGGAGTTCGCGGCGGAGCGGGGCATCCCCGTGGTCACCGTCGACGGGCGCT TCGACGGCTGCGTGGAGTTCGCCGAGCTGATCGCGGCCGAGGAGCTGGAGGCCGACGCCG ACATCCACCCCGACGACGTCGTCGCGCTGCCCTACTCCTCCGGCACCACCGGGCTGCCCA AGGGCGTCATGCTCACCCACCGCAGCCTCATCACCAGCGTCGCGCAGCAGGTTGATGGCG AGAACCCGAACCTGTACTTCCGCAAGGACGACGTGGTGCTGTGCCTGCTGCCGCTGTTCC ACATCTACTCGCTGAACTCGGTGCTGCTGGCCGGCCTGCGCGCGGGCTCCACCATCGTGA TCATGCGCAAGTTCGACCTGGGCGCGCTGGTGGACCTGGTGCGCAGGTACGTGATCACCA TCGCGCCCTTCGTGCCGCCCATCGTGGTGGAGATCGCCAAGAGCCCCCGCGTGACCGCCG GCGACCTCGCGTCCATCCGCATGGTCATGTCCGGCGCCGCGCCCATGGGCAAGGAGCTCC AGGACGCCTTCATGGCCAAGATTCCCAATGCCGTGCTCGGGCAGGGGTACGGGATGACGG AGGCAGGCCCCGTGCTGGCGATGTGCCTGGCCTTCGCCAAGGAGCCGTACCCGGTCAAGT CCGGGTCGTGCGGCACCGTGGTGCGGAACGCGGAGCTGAAGATCGTCGACCCCGACACCG GCGCCGCCCTCGGCCGGAACCAGCCCGGCGAGATCTGCATCCGCGGGGAGCAGATCATGA AAGGTGCGCCGCACACCGCCCCAGCCGTTGACTTGTCATCTCATTTCTTTGCAGTTGCAG CTGTAGGCTGTATAGCGCTCGTGTTCGCAAAATATGGCCATCTATCCTTCGAATTCGAAG CATCACTTTCACATGCCATTAGCGCCACCAGCCAACCAAGCTGCGGGCACGCCACGCCTC TGACGCCGTCCTGGCGCTTGAGGCGACCTCGGCGCACTGCCACGTGGGCCAATGTGGTGC TCGTGCGCGCGTGCACCGCCACGCGGGGCCCCGCGTGGCTTGGGTACAGGTTGGTGACAT GGACAAAATTTCCTGTTGGTCCGAGTACTTTGGCTGCAAAGAATCCGTTTGGTCCCTGCG GTTAGGGCCACGCAGCGACACACAGTCGCCTGATCGAACGCCTTTTTCCAAACCGACAGA CAGTGAAATGGTGATTTGTCGTTTTCGCCATCGTCAATACGAGGGACCATCGGCATCGTC TGCAAAATCAAGAACGGCGAGCTAGAAAACTCGTGGCGTGCTCGGTCGTGTTAGCGCCAG TTTATTCGTAGCTGGAGACTTTGCAGGAGGGATCTGTTAGTGGCGGCCTGGCCTGGTCCA AGTTCCACCATGGTTAGCTGGACAGAGGAATCCATTCCCCGCACGCCACACGTTTCGCGT TCTCTGCTCCGCAGCCGCCAGCCGCGCGTGGTAGTTGGCCATTCGGGCGACCATGGCACT CCCTCTTTTTTTATTGGCAAAAACAAAAAAGAGTCATGTGGCCACCACGCCGCATGATTG AGTGGTACTGCTAGCTAGCAGGGAAGTCAAAAGTTTTGGTGAAGAAAGATGGACGCTCGT GGCCATGGCGGCGGGTTATGAACGTTCACGTCCATCGCCTCGCCTGTGCCAGGACCAGCC AGAGAGCTTGCTTCCCCGGTAGACTTCCAACGGCAGTTGGTTAGGTTTTTAGGTCCACCT AACACGAGTAGAGTAGCTGGCACTACCTGGCGTGGGAGCGCGAGGGCAGAGTCGGTGTCG CTGCAGAGTCATGATCATTTCCGTCCGTCGTGCTCCCGTCCGACGACATAGCAACCACGA AAGCGAGGACCTGAAACTGAAACGCTAGCAGATGTTCGGTGCACCGTCGCCGTGACCGAG ACAGCAATGGAAGTCCTCCATTTGGGCGAGCCAAGGAAAATTCATTGCCCCCCTTTTTTT TTCTCTCTCTCTCAATCGTATCGTTGAAGCGTATGTCTGCCTGGATAAACCTGACCAAAC CAAACCAAACCAAACTCGATCTTTGGTGGCATCTAGCTGCGCAGGGTGCTTTCGGCGACG CCTCCTTGCTTTGCTCTCTTTATTTTTAAAACAAAATTAAATTTCGCCATGACAAATTCC GTCGTCCCGCCATCATCACTGAGTTTGCTGTATTGGTCAGAGGTGCAAACTAACTCCATC GATGCCGCGGATTAATGAACCGGCCGTCTTTCTGCAGGTTACCTGAACGACCCCGAGTCG ACGAAGAACACCATCGACAAGGACGGCTGGCTGCACACCGGAGACATCGGCTACGTGGAC GACGACGACGAGATCTTCATCGTCGACAGGCTCAAGGAGATCATCAAGTACAAGGGCTTC CAGGTGCCGCCGGCGGAGCTGGAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCC GCCGTCGTATCAATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGG ACCGAAGGTTCTCAAGTCACCGAGGATGAGATCAAGCAATTCGTCGCCAAGGAGGTGGTT TTCTACAAGAAGATCCACAAGGTCTTCTTCACCGAATCCATCCCCAAGAACCCGTCGGGC AAGATCCTGAGGAAGGACTTGAGAGCCAGGCTCGCCGCCGGTGTTCACTGAGGCCCGTAT GCAGCTTCTTCTCGGACGGCCACCACGCTGCTGCGAAAAAAAAGGCGATGTAATGGCGGT AACACTACTATTCATGAACTGGCAACAGAAGGGACACGTATTCCTGTGGAACACATGTTG CCAGAAAGAGGTTTTAGTTTGTCTGTTTGTTGGCCCTGTGTGTAATGTTCATAAACGATA TAGACGTCGTCTCTATGTTGTTTTTGACCCAAAGAACAAGCCTGATTACGGCAATACAGC TACGGAGTACCGTGTTT