Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d015435_T022
CDS Infomation

cds chromosome:B73_RefGen_v4:5:90053539:90074520:-1 gene:Zm00001d015435 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein STRUBBELIG-RECEPTOR FAMILY 1
Sequence

ATGTCATTATCAGAACTCCATAGTCTAACAGCCATGTCACTGAATGATAACCATCTAGAT
GGAAAGCTACCAGATGCATTTGATTCCCTCACGGGACTTGTAAATCTGGATATTTCTTCC
AACAACTTCAGTGGTCCATTACCACCTTCATTGGGAAGCTTGACATCACTGACTACATTG
CACATGCAAGATAATCAACTATCTGGTACCCTTAATGTCTTGCAGGATCTCCCCCTCAAA
GACTTAAATGTAGAGAATAATATGTTTTCTGGACCAGTTCCTCCGAAGCTGCTGAACATA
CCAAACTTCAAAAATGATGGGAATCCTTTTAATACCAGCATAGCTCCCTCTACCTCACCC
TCTTCAACACCTACAGGCTCTAGACCAACACAAACACCATCGTCTTCTTCATCCCCTTCA
GGATCTCCGCCACCATCTAGTGCAGCATCAAACTCTTCTAGTGGATCTACTGCTCGAAAT
AGCAACTCTCCATCATCCAAGAAGAACAAGTCTTCACCCCTCAGAACTGTTGGATATGTT
CTTCTTGCTATTGTACTATTCATAGTTCTAGTGCTGTTGGTAATCTTTTGCCTGTCCAAG
TATCAAGAAAGACAGTCTAGACGTGATTATTCCACGTCTCAATTAGGTAGGGTGCACCAG
AGGGTTGAGGAGCCAAAAAGCAAGCAAGCTTCGGTGCAGTCTAAACATGAAGCCAAAAAA
GGTTCATCTGAGGTTCCTGAAAGAAAGAAGCCCCGAGAAATAAATTTAGCTGTACCAGTT
GCCATTGAGAAGCCTCCTGAAAAGAGAAAAGAGCGTGTAATTAATTTGGAACGAACAGAA
TCAGAGATCTTTGCTGCAGCACCACCTCCACCTCCACCTCCGCCCCCACCACCACCGCCC
CCAACACCGCCACCGCCACCTCCGCCTCCACGACTGCCATCACCACCTCCTGTTGAAAAA
GTAACTGTAAATCCCATTGTACTTCCAGAAAAAAGAGTTAGCACCCCGCCAAGGACTGGT
CCCTCGACATCTGCAACATCCTTTTCGGTGGCATCACTTCAGCAATATACAAATAGTTTT
CAAGAGCAAAATTTGATAAGGGAGAGTAGATTGGGGAAAGTGTATTTGGCAGAACTTCCT
GAAGGCAAATTACTGGAAGTTATGAAGATTGATAATGCTAATGGAAGAATACCAGTAGAT
GACTTTCTAGAGTTGGTTGCTCGTATATCAGATATTAGACACCCTAACATTCTTGAATTA
GTTGGATATTGTGCTGAATATGAACAGCGGTTACTCGTGTATAACTACTTCAGTAGAAAA
ACATTACATGATGTACTACATGAAGGGGAGGATCTAGATGAACCATTATCCTGGAATGCT
CGCCTCCACATTGTTCTTCATGCAGCAAAAGCCTTAGAGTATCTCCATGACACCTGTGAA
CCTCCTGTAGTACACCAGAATTTTGAACCAGCCAACGTGCTCCTCGACAATAGATGCTCA
GTGCGTGTTGCTGAATGTGGGCTGGCACAATTGATGGCGTCTGGTTCTGTTACACAGCTA
TCAGGCCGTATGAGAGCTCTACTCAATTATGAAGCACCTGAAATCCATGAATCTGAGCCT
TTTACTCGTCAAAGCGACGTATATAGTTTGGGTGTGGTGATGCTAGAACTTCTTACTGGT
CGTAAGCCATATGACAGTTCTCGTCCACGTGATGAACAACATCTTGTTCGATGGGCTAAT
TCTCAGCTTCATGACATGGAGTCCCTGTCAAAGATGGTTGATCCTTCTATCCGAGGAGAG
TGTTCTGTGATACTGTTGTCACGTTTTGCAGACATCATCAGTCAGTGTATTCAGCCGGGA
CCAGAATTCAGGCCAGCAATGTCTCAAATCGTCCAAGACCTAGCTAGGATTGTAGGTGCT
AGTGGTGCGGTATCAGAGTGA

Peptide Sequence

PEP ID

Zm00001d015435_P022
PEP Infomation

pep chromosome:B73_RefGen_v4:5:90053539:90074520:-1 gene:Zm00001d015435 transcript:Zm00001d015435_T022 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein STRUBBELIG-RECEPTOR FAMILY 1
Sequence

MSLSELHSLTAMSLNDNHLDGKLPDAFDSLTGLVNLDISSNNFSGPLPPSLGSLTSLTTL
HMQDNQLSGTLNVLQDLPLKDLNVENNMFSGPVPPKLLNIPNFKNDGNPFNTSIAPSTSP
SSTPTGSRPTQTPSSSSSPSGSPPPSSAASNSSSGSTARNSNSPSSKKNKSSPLRTVGYV
LLAIVLFIVLVLLVIFCLSKYQERQSRRDYSTSQLGRVHQRVEEPKSKQASVQSKHEAKK
GSSEVPERKKPREINLAVPVAIEKPPEKRKERVINLERTESEIFAAAPPPPPPPPPPPPP
PTPPPPPPPPRLPSPPPVEKVTVNPIVLPEKRVSTPPRTGPSTSATSFSVASLQQYTNSF
QEQNLIRESRLGKVYLAELPEGKLLEVMKIDNANGRIPVDDFLELVARISDIRHPNILEL
VGYCAEYEQRLLVYNYFSRKTLHDVLHEGEDLDEPLSWNARLHIVLHAAKALEYLHDTCE
PPVVHQNFEPANVLLDNRCSVRVAECGLAQLMASGSVTQLSGRMRALLNYEAPEIHESEP
FTRQSDVYSLGVVMLELLTGRKPYDSSRPRDEQHLVRWANSQLHDMESLSKMVDPSIRGE
CSVILLSRFADIISQCIQPGPEFRPAMSQIVQDLARIVGASGAVSE

Transcript Sequence

Transcript ID

Zm00001d015435_T022
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:90053539:90074520:-1 gene:Zm00001d015435 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein STRUBBELIG-RECEPTOR FAMILY 1
Sequence

AGACGGGGGCAGAGCGTAAGGGGAGAATCGTGCTCCGGGAAAGCAAACCTCAGAGAATCC
ACCTCTCCCCCACCCTCTCTCTCTCTCTAGATCTACGCAAGCCGCCTCGGTATCCGCGAT
CGCCACCGCCCGCGGCGGCTGATGCGTCCGTGCTGCTGCGCGGAGGTGGCGCTGCGCTGT
TAGCTGGCGCGAGAGTTCGTCCGGCCCCCGACCGAGTGATGGGGGCGGCGGGGGGCGGCC
GGTGCGTCCGCCTCGGGGCGGCGCCGGTCCTCGTCCTGCTGCTGATCGCCGCTGCCACAT
TGCCGCGGCTGGCGCGCGCGGTCACCGACGCCGGCGACGTTTCTGCTATAAATGGACTTT
ATGTTGCACTTGGATCACCAAAGCTGCCAGGATGGTCTGCTAGTGCTGGAGATCCCTGTG
GTGAGAGCTGGCAGGGTGTCACATAACTCATTGTTTGCAGAGTTTTCAATGCTGCAAATC
TGGGAGGACAGCTAGGCAGCCTGGGGAACTTCACTTCAATAACTGAAATAAATCTTAGCA
ACAACAATATCGGTGGAACCATACCAGAAGATCTACCTGTCACACTGCAGAATCTGTTTC
TCTCAGATAACCAACTAACTGGAAGCATTCCAATGTCATTATCAGAACTCCATAGTCTAA
CAGCCATGTCACTGAATGATAACCATCTAGATGGAAAGCTACCAGATGCATTTGATTCCC
TCACGGGACTTGTAAATCTGGATATTTCTTCCAACAACTTCAGTGGTCCATTACCACCTT
CATTGGGAAGCTTGACATCACTGACTACATTGCACATGCAAGATAATCAACTATCTGGTA
CCCTTAATGTCTTGCAGGATCTCCCCCTCAAAGACTTAAATGTAGAGAATAATATGTTTT
CTGGACCAGTTCCTCCGAAGCTGCTGAACATACCAAACTTCAAAAATGATGGGAATCCTT
TTAATACCAGCATAGCTCCCTCTACCTCACCCTCTTCAACACCTACAGGCTCTAGACCAA
CACAAACACCATCGTCTTCTTCATCCCCTTCAGGATCTCCGCCACCATCTAGTGCAGCAT
CAAACTCTTCTAGTGGATCTACTGCTCGAAATAGCAACTCTCCATCATCCAAGAAGAACA
AGTCTTCACCCCTCAGAACTGTTGGATATGTTCTTCTTGCTATTGTACTATTCATAGTTC
TAGTGCTGTTGGTAATCTTTTGCCTGTCCAAGTATCAAGAAAGACAGTCTAGACGTGATT
ATTCCACGTCTCAATTAGGTAGGGTGCACCAGAGGGTTGAGGAGCCAAAAAGCAAGCAAG
CTTCGGTGCAGTCTAAACATGAAGCCAAAAAAGGTTCATCTGAGGTTCCTGAAAGAAAGA
AGCCCCGAGAAATAAATTTAGCTGTACCAGTTGCCATTGAGAAGCCTCCTGAAAAGAGAA
AAGAGCGTGTAATTAATTTGGAACGAACAGAATCAGAGATCTTTGCTGCAGCACCACCTC
CACCTCCACCTCCGCCCCCACCACCACCGCCCCCAACACCGCCACCGCCACCTCCGCCTC
CACGACTGCCATCACCACCTCCTGTTGAAAAAGTAACTGTAAATCCCATTGTACTTCCAG
AAAAAAGAGTTAGCACCCCGCCAAGGACTGGTCCCTCGACATCTGCAACATCCTTTTCGG
TGGCATCACTTCAGCAATATACAAATAGTTTTCAAGAGCAAAATTTGATAAGGGAGAGTA
GATTGGGGAAAGTGTATTTGGCAGAACTTCCTGAAGGCAAATTACTGGAAGTTATGAAGA
TTGATAATGCTAATGGAAGAATACCAGTAGATGACTTTCTAGAGTTGGTTGCTCGTATAT
CAGATATTAGACACCCTAACATTCTTGAATTAGTTGGATATTGTGCTGAATATGAACAGC
GGTTACTCGTGTATAACTACTTCAGTAGAAAAACATTACATGATGTACTACATGAAGGGG
AGGATCTAGATGAACCATTATCCTGGAATGCTCGCCTCCACATTGTTCTTCATGCAGCAA
AAGCCTTAGAGTATCTCCATGACACCTGTGAACCTCCTGTAGTACACCAGAATTTTGAAC
CAGCCAACGTGCTCCTCGACAATAGATGCTCAGTGCGTGTTGCTGAATGTGGGCTGGCAC
AATTGATGGCGTCTGGTTCTGTTACACAGCTATCAGGCCGTATGAGAGCTCTACTCAATT
ATGAAGCACCTGAAATCCATGAATCTGAGCCTTTTACTCGTCAAAGCGACGTATATAGTT
TGGGTGTGGTGATGCTAGAACTTCTTACTGGTCGTAAGCCATATGACAGTTCTCGTCCAC
GTGATGAACAACATCTTGTTCGATGGGCTAATTCTCAGCTTCATGACATGGAGTCCCTGT
CAAAGATGGTTGATCCTTCTATCCGAGGAGAGTGTTCTGTGATACTGTTGTCACGTTTTG
CAGACATCATCAGTCAGTGTATTCAGCCGGGACCAGAATTCAGGCCAGCAATGTCTCAAA
TCGTCCAAGACCTAGCTAGGATTGTAGGTGCTAGTGGTGCGGTATCAGAGTGACAGATAA
AGGGGGAACAGTAAACATCTAGCTTGACTGTATGCACTTGTGGAGACGCCAGAACGTTTG
TTTCCTTTATCTAAAAAAAAGGTAAAACATCTAGCCTCAGTCGTGTGGCCAGTGAAGATT
CATACATCCTCAGCGCAGTGCCAGGGGCACTCTCAGTATTTATGTTGGACGATATTGCGG
CTAGTGTACATGCCATTTTGGAGCCCCATTTGCTTCTGGAAAGGTGTAGTGGTACTGTGG
TAGTATGGCACAACCAGTGAGATATGGCTTCTCATTGTTGCTAGCAGATATTCCTGAGCT
CCTCTAGACATGATAATTTCACCTGCAGGCAGTGTATCTCTTGTAACTAATTCCAATTTT
TTATTACTTTATTATTACATT