Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d015346_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:5:85582446:85585318:-1 gene:Zm00001d015346 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein
Sequence	ATGGCCAACCTAGCGGCCCAGCTCGCTGCCGTGCTCCAGGCCTGCATCAAGCGTAGCGGT GGCCGCAAGCCCAGCCGCTCAAACGCCAAGGCCGCGCACGCGCGCGTCCTCGCCGCCGGC CTCGCCGCAGATACCTTCCTCCTCAACCGCCTCGTCGAGCTCTACTCCCTCTCGGGCCTG CCATGCCACGCGCTCCGCGCCTTCCGCGCGCTGCCCCACCCCAACGTCTACTCCTACAAC GCCGCCATCTCAGCTGCCTGCCGCGCGGGGGACCTCGCCGCCGCCCGGGACCTGCTCGGC CGAATGCCCGACCGGAACGCCGTCTCCTGGAATACCGTCATCGCCGCCGTCGCGCGGTCG GGCTCCCCGGGGGAGGCGCTAGAGATGTACCAGGGGATGCTGCAGGAGGGCCTCGCGCCG ACGAACTTCACGCTGGCCAGCGTGCTCAGCGCGTGCGGCGCCGTGGCCGCGCTCGACGAC GGGAGGCGCTGCCATGGGCTCGCCGTCAAGGTCGGGCTCGACGGGCACCAGTTCGTCGAG AACGGGCTCCTCGGCATGTACACAAAGTGCGGGAGCGTCGCCGACGCGGTCAGGCTGTTC GACGGGATGCCTAGCCCGAACGAGGTGTCGTTCACGGCGATGATGGGCGGGTTGGCGCAG GGCGGGGCCGTCGACGATGCCCTCAGGTTGTTCGCGCGGATGAGCAGGACCGGGATTCGT GTTGATCCGGTAGCGGTCTCCAGTGTTCTCGGCGCCTGCGCGCAGGCCTGCGCTGGTGAC TACAATGTCGCTCGTGCAATCCAGCTCGCACAGTCCATCCATGCATTGGTTGTCAGAAAA GGTTTTGGATCGGACCAACACGTGGGTAACTCGTTGGTTGATCTGTACGCGAAGGGCATG AAGATGGATGAGGCCATCAAAGTCTTTGAGTCGTTGTCCAGTGTTAGTATTGTTTCTTGG AACATTCTTATAACTGGGTATGGTCAGCTGGGATGCTATGAGAGGGCCATGGAAGTTCTT GAGTTTATGCAAGAGTCAGGCTTTGAGCCCAATGAGGTAACCTACAGTAACATGCTTGCT TCTTGTATTAAGGCAAGGGATGTTCCGTCTGCTCGTGCAATGTTTGACAAGATACCAAAG CCAAGTGTGACTACATGGAACACCCTATTATCTGGCTACGGCCAGGAGGAACTGCATCAA GAAACAATCGACTTGTTTAGGAGAATGCAACATCAAAATGTGCAGCCTGACCGGACAACT TTAGCTGTGATACTCAGTTCATGTTCTAGATTAGGAAATTTCGAACTGGGCAAGCAAGTG CATTCTGCTTCAGTAAGACTACTGCTTCATAATGACATGTTTGTTGCGAGTGGTCTGATA GATATATATTCAAAGTGTGGTCAGGTTGGCATCGCACTGATCATTTTCAACATGATGACC GAGAGAGATGTGGTATGCTGGAATTCCATGATCTCAGGTTTGGCTATCCATTCTTTGAGT GAAGAGGCCTTCGATTTCTTGAAGCAGATGAGGGAAAATGGGATGTTCCCCACAGAATCC TCTTATGCTAGTATGATCAATTTGTGTGCTAGATTGTCATCCATACCTCAAGGTAGGCAG ATGCATGCACAGGTTCTGAAGGATGGTTATGATCAGAATGTATACGTTGGCTGTTCCCTG ATCGACATGTATGCTAAATCTGGCAACATGGATGATGCACGCCTTTTCTTTAACTGCATG ATTGTGAAGAACTTAGTGGCATGGAATGAGATGATCCATGGATATGCCCAGAATGGTTTT GGAGAGAAAGCTGTGGAATTGTTTGAGTACATGCTAACCACAAAACAGAAGCCTGACAGT GTGACTTTCATTGCTGTACTGACAGGATGCAGTCACTCTGGGCTCGTTGATGAAGCAGTT ACATTCTTTAATTCCATGGAGAGCAATTATGGGATTACACCATTAGTTGAGCATTACACT TGCCTGATAGATGCACTGGCGCGGGCTGCTCGTTTTGCTGAAGTTGAGGCAGTGATAGGT AAAATGCCATACAAGGATGATCCTATACTGTGGGAAGTTCTACTAGCTGCATGTGTTGTA CATCACAATGCTGAGTTGGGGGAATTTTCTGCCAAGCATCTATTCCGCCTTGATCCAAAA AATCCATCACCTTATGTGCTTCTATCAAACATATATGCTACTTTGGGTAGACATGGTGAT GCCTCAGCTGTTAGGGCGCTGATGAGTAGTCGCGGTGTTGTGAAAGGCCGCGGATACAGC TGGGTGAATCACAAGGATGGTTCTCGTGCCTTTATGGTAGCTGATGATCTTGGAACGGAT GTTGGAGAACGCACAATGTTCAGTGATAATGGGGACACTTCTGGGATGACAGAAGTGCAC ATAGATGAAACCTGTGCTGGATGA

Peptide Sequence

PEP ID	Zm00001d015346_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:5:85582446:85585318:-1 gene:Zm00001d015346 transcript:Zm00001d015346_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein
Sequence	MANLAAQLAAVLQACIKRSGGRKPSRSNAKAAHARVLAAGLAADTFLLNRLVELYSLSGL PCHALRAFRALPHPNVYSYNAAISAACRAGDLAAARDLLGRMPDRNAVSWNTVIAAVARS GSPGEALEMYQGMLQEGLAPTNFTLASVLSACGAVAALDDGRRCHGLAVKVGLDGHQFVE NGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIR VDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHALVVRKGFGSDQHVGNSLVDLYAKGM KMDEAIKVFESLSSVSIVSWNILITGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNMLA SCIKARDVPSARAMFDKIPKPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTT LAVILSSCSRLGNFELGKQVHSASVRLLLHNDMFVASGLIDIYSKCGQVGIALIIFNMMT ERDVVCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTESSYASMINLCARLSSIPQGRQ MHAQVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCMIVKNLVAWNEMIHGYAQNGF GEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEAVTFFNSMESNYGITPLVEHYT CLIDALARAARFAEVEAVIGKMPYKDDPILWEVLLAACVVHHNAELGEFSAKHLFRLDPK NPSPYVLLSNIYATLGRHGDASAVRALMSSRGVVKGRGYSWVNHKDGSRAFMVADDLGTD VGERTMFSDNGDTSGMTEVHIDETCAG

Transcript Sequence

Transcript ID	Zm00001d015346_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:5:85582446:85585318:-1 gene:Zm00001d015346 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein
Sequence	ATGGCCAACCTAGCGGCCCAGCTCGCTGCCGTGCTCCAGGCCTGCATCAAGCGTAGCGGT GGCCGCAAGCCCAGCCGCTCAAACGCCAAGGCCGCGCACGCGCGCGTCCTCGCCGCCGGC CTCGCCGCAGATACCTTCCTCCTCAACCGCCTCGTCGAGCTCTACTCCCTCTCGGGCCTG CCATGCCACGCGCTCCGCGCCTTCCGCGCGCTGCCCCACCCCAACGTCTACTCCTACAAC GCCGCCATCTCAGCTGCCTGCCGCGCGGGGGACCTCGCCGCCGCCCGGGACCTGCTCGGC CGAATGCCCGACCGGAACGCCGTCTCCTGGAATACCGTCATCGCCGCCGTCGCGCGGTCG GGCTCCCCGGGGGAGGCGCTAGAGATGTACCAGGGGATGCTGCAGGAGGGCCTCGCGCCG ACGAACTTCACGCTGGCCAGCGTGCTCAGCGCGTGCGGCGCCGTGGCCGCGCTCGACGAC GGGAGGCGCTGCCATGGGCTCGCCGTCAAGGTCGGGCTCGACGGGCACCAGTTCGTCGAG AACGGGCTCCTCGGCATGTACACAAAGTGCGGGAGCGTCGCCGACGCGGTCAGGCTGTTC GACGGGATGCCTAGCCCGAACGAGGTGTCGTTCACGGCGATGATGGGCGGGTTGGCGCAG GGCGGGGCCGTCGACGATGCCCTCAGGTTGTTCGCGCGGATGAGCAGGACCGGGATTCGT GTTGATCCGGTAGCGGTCTCCAGTGTTCTCGGCGCCTGCGCGCAGGCCTGCGCTGGTGAC TACAATGTCGCTCGTGCAATCCAGCTCGCACAGTCCATCCATGCATTGGTTGTCAGAAAA GGTTTTGGATCGGACCAACACGTGGGTAACTCGTTGGTTGATCTGTACGCGAAGGGCATG AAGATGGATGAGGCCATCAAAGTCTTTGAGTCGTTGTCCAGTGTTAGTATTGTTTCTTGG AACATTCTTATAACTGGGTATGGTCAGCTGGGATGCTATGAGAGGGCCATGGAAGTTCTT GAGTTTATGCAAGAGTCAGGCTTTGAGCCCAATGAGGTAACCTACAGTAACATGCTTGCT TCTTGTATTAAGGCAAGGGATGTTCCGTCTGCTCGTGCAATGTTTGACAAGATACCAAAG CCAAGTGTGACTACATGGAACACCCTATTATCTGGCTACGGCCAGGAGGAACTGCATCAA GAAACAATCGACTTGTTTAGGAGAATGCAACATCAAAATGTGCAGCCTGACCGGACAACT TTAGCTGTGATACTCAGTTCATGTTCTAGATTAGGAAATTTCGAACTGGGCAAGCAAGTG CATTCTGCTTCAGTAAGACTACTGCTTCATAATGACATGTTTGTTGCGAGTGGTCTGATA GATATATATTCAAAGTGTGGTCAGGTTGGCATCGCACTGATCATTTTCAACATGATGACC GAGAGAGATGTGGTATGCTGGAATTCCATGATCTCAGGTTTGGCTATCCATTCTTTGAGT GAAGAGGCCTTCGATTTCTTGAAGCAGATGAGGGAAAATGGGATGTTCCCCACAGAATCC TCTTATGCTAGTATGATCAATTTGTGTGCTAGATTGTCATCCATACCTCAAGGTAGGCAG ATGCATGCACAGGTTCTGAAGGATGGTTATGATCAGAATGTATACGTTGGCTGTTCCCTG ATCGACATGTATGCTAAATCTGGCAACATGGATGATGCACGCCTTTTCTTTAACTGCATG ATTGTGAAGAACTTAGTGGCATGGAATGAGATGATCCATGGATATGCCCAGAATGGTTTT GGAGAGAAAGCTGTGGAATTGTTTGAGTACATGCTAACCACAAAACAGAAGCCTGACAGT GTGACTTTCATTGCTGTACTGACAGGATGCAGTCACTCTGGGCTCGTTGATGAAGCAGTT ACATTCTTTAATTCCATGGAGAGCAATTATGGGATTACACCATTAGTTGAGCATTACACT TGCCTGATAGATGCACTGGCGCGGGCTGCTCGTTTTGCTGAAGTTGAGGCAGTGATAGGT AAAATGCCATACAAGGATGATCCTATACTGTGGGAAGTTCTACTAGCTGCATGTGTTGTA CATCACAATGCTGAGTTGGGGGAATTTTCTGCCAAGCATCTATTCCGCCTTGATCCAAAA AATCCATCACCTTATGTGCTTCTATCAAACATATATGCTACTTTGGGTAGACATGGTGAT GCCTCAGCTGTTAGGGCGCTGATGAGTAGTCGCGGTGTTGTGAAAGGCCGCGGATACAGC TGGGTGAATCACAAGGATGGTTCTCGTGCCTTTATGGTAGCTGATGATCTTGGAACGGAT GTTGGAGAACGCACAATGTTCAGTGATAATGGGGACACTTCTGGGATGACAGAAGTGCAC ATAGATGAAACCTGTGCTGGATGATTTGAAATCTGGTGCTGCTGCTAGCCTGCTACCATC TTCACTGAAACCTTAAACCAATATTAGTTGAATCCAGCAGGCTCAATCTGGTGTTGGGAG CCTCAGGTTTCACTGTTGTTTTAGCTTCAAGCGTTACTGCAAATTAGGCATGGTCTGAAC GTTTGGGAGGAAAGTGTGAACTGAAGGAAATGTACATTGCAGATTGGTGCAAAGACAACT TCAAGCTGGATTGATTAGTTTATTTCATCATATTCTGCAAAAGGTGTGTTGAGCCATGAC ATGTGGAAGCTCATACCAATTCCTAGCTTCATGCACCATGATGAGTGTAAATTTCTTCCC AGATGAGTCAAGGATAAAATTGCAATTGTTTTTTGAAGTGTATAATGGGAGAAAAAGGTA ACACTAACTGTACTATATGTTCTTAGAAGTCTTGGCAGACAATGCCTTTTGAT