Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d015297_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:5:83172606:83176169:1 gene:Zm00001d015297 gene_biotype:protein_coding transcript_biotype:protein_coding description: protein; Ternary complex factor MIP1-like
Sequence

ATGAAGCTTCCACACAAGGCACAGGAGCTACTGATTAACATCGCCTCCTTGGAGATTACC
GTTTCAAACCTTGAAAAGAAGCTAAATGATCTGTACTACCAGCTTTGTCACGAAAGGAAC
GAAAGGTTACTTGCTGAAAATAATCAGGGATGCTTGCCATCTACATCCTCCGATGAGCAC
CAGTCATTGTCAACTTGCACGTGTACGTGGGAAGAGCACATATCATCGTTGAGAGATTTG
AAGTTTGGGGGATCTGAATCAATGAGATCAATGAGACAGGACTTATTCCCCGAGCTTGAA
GATGACCAGGATATGGGAGAAGATCCTGAGGGTCAACAGATAGTTTCTTTAAACAGGCTG
CTAGAAAAGCACCGAGATTCTTCTTTGAATAGACTTCTTGAAAAGCATCGAGATGAAGAG
ATGCAAGAATCTGGCTCCATGGAAAATGAAGGCAATGAAAATGAGCAGCCTGACACGTTA
TCCTTTGAACAGTCTATTCTAAAGATAACTAGCATAAAAGGAGGGAATCTTTGGAGCAAC
CCAAATGAGCTCTCTGAGGAGATGGTTCGCTGCATGAGAAACATTTTCCTACGCTTGTCT
GAATCCTTGAAGATATCGCCGAAGACATCTTCTGATTGTTCATCTTCCTCCGTGGAGCGT
CTATCAGGCTCCACGTTAGCATCTTTCTCAGATTCATCCATAATGCCCTCAATGCTACGG
AGTCCTTCAGTTGATTCTAATCACAATGACGAGACGATGAAGGAAGTCAGGAACTTTGAT
CCGTATAAAGTTAATGGAAAGGAAACCCGAAGAGATATCGGAAACTATCGTTCAGCAGCT
GAAGTATCTTGGATGTCTGTTGGAAAGGATCAACTAGAATATGCATCTGAAGCTTTAAAG
AAGTTCAGATTTCTAGTGGAACAATTGTCAAAGGTTAATCCTAGCTGTATGGATCGCGAT
CAGCGGCTAGCCTTTTGGATTAACTTATACAATGCTTTGATAATGCATGCGTATTTGGCA
TACGGAGTACCTCGAAATGACATCAAGCTTTTTTCTCTGATGCAAAAGGCTTGTTACACA
GTTGGCGGCCAGTCCTTCAGCGCAGCAGAAATAGAGTTTGTGATTCTAAAGATGAAGACT
CCAGTTCATCGGCCCCAACTTTCTTTGATGTTGACTCTGAATAAGTTCAAGATTACTGAG
GATCACAAGAAGTACTCAATCGATGAATTCGAACCCCTTCTTTTGTTCGGACTTAGCTGT
GGAATGTTCTCTTCTCCTGCTGTACGCATATTCTCCGCTGCAAATGTTAGGCAGGAGCTC
CAGGAATCTCTGAGAGACTATATTCAGGCGACTGTCGGTACAAATGGCAAAGGGAAGCTG
CTGATCCCGAAGCTAGTGCAGAGCTACGCCAAGGGAGCTGTCGAGGACTCTCTGCTCGCA
GACTGGATCTGCCACCACCTTGCACCTGATCAAGCCACGGTCATCCGGGACTCTTCCTCG
CAGTGGAAGCAGCGGCTACTCGGAGCTCGAAGCTTCACCGTTCTCGCCTTCGACTCCAAG
TTCCGGTACCTCTTCTTGCCAGACAGCTGTGGCTCCCAGAGCCAGAAGCCAGAGGCAAAG
CAATCTTACAAACTTCCTGAGCCGTGTTCAGAATCAGAATAG

Peptide Sequence

PEP ID

Zm00001d015297_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:5:83172606:83176169:1 gene:Zm00001d015297 transcript:Zm00001d015297_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description: protein; Ternary complex factor MIP1-like
Sequence

MKLPHKAQELLINIASLEITVSNLEKKLNDLYYQLCHERNERLLAENNQGCLPSTSSDEH
QSLSTCTCTWEEHISSLRDLKFGGSESMRSMRQDLFPELEDDQDMGEDPEGQQIVSLNRL
LEKHRDSSLNRLLEKHRDEEMQESGSMENEGNENEQPDTLSFEQSILKITSIKGGNLWSN
PNELSEEMVRCMRNIFLRLSESLKISPKTSSDCSSSSVERLSGSTLASFSDSSIMPSMLR
SPSVDSNHNDETMKEVRNFDPYKVNGKETRRDIGNYRSAAEVSWMSVGKDQLEYASEALK
KFRFLVEQLSKVNPSCMDRDQRLAFWINLYNALIMHAYLAYGVPRNDIKLFSLMQKACYT
VGGQSFSAAEIEFVILKMKTPVHRPQLSLMLTLNKFKITEDHKKYSIDEFEPLLLFGLSC
GMFSSPAVRIFSAANVRQELQESLRDYIQATVGTNGKGKLLIPKLVQSYAKGAVEDSLLA
DWICHHLAPDQATVIRDSSSQWKQRLLGARSFTVLAFDSKFRYLFLPDSCGSQSQKPEAK
QSYKLPEPCSESE

Transcript Sequence

Transcript ID

Zm00001d015297_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:83172606:83176169:1 gene:Zm00001d015297 gene_biotype:protein_coding transcript_biotype:protein_coding description: protein; Ternary complex factor MIP1-like
Sequence

GCAGGTCAAGAAATTGCAGAGGCAGCTTGAAGAAGAGGTTGATCTGCACGTGGCGTTGGC
GGATGCTGTTACACAAAATGTTGCGCCTATACTGAAGTCTTCTATGAAGCTTCCACACAA
GGCACAGGAGCTACTGATTAACATCGCCTCCTTGGAGATTACCGTTTCAAACCTTGAAAA
GAAGCTAAATGATCTGTACTACCAGCTTTGTCACGAAAGGAACGAAAGGTTACTTGCTGA
AAATAATCAGGGATGCTTGCCATCTACATCCTCCGATGAGCACCAGTCATTGTCAACTTG
CACGTGTACGTGGGAAGAGCACATATCATCGTTGAGAGATTTGAAGTTTGGGGGATCTGA
ATCAATGAGATCAATGAGACAGGACTTATTCCCCGAGCTTGAAGATGACCAGGATATGGG
AGAAGATCCTGAGGGTCAACAGATAGTTTCTTTAAACAGGCTGCTAGAAAAGCACCGAGA
TTCTTCTTTGAATAGACTTCTTGAAAAGCATCGAGATGAAGAGATGCAAGAATCTGGCTC
CATGGAAAATGAAGGCAATGAAAATGAGCAGCCTGACACGTTATCCTTTGAACAGTCTAT
TCTAAAGATAACTAGCATAAAAGGAGGGAATCTTTGGAGCAACCCAAATGAGCTCTCTGA
GGAGATGGTTCGCTGCATGAGAAACATTTTCCTACGCTTGTCTGAATCCTTGAAGATATC
GCCGAAGACATCTTCTGATTGTTCATCTTCCTCCGTGGAGCGTCTATCAGGCTCCACGTT
AGCATCTTTCTCAGATTCATCCATAATGCCCTCAATGCTACGGAGTCCTTCAGTTGATTC
TAATCACAATGACGAGACGATGAAGGAAGTCAGGAACTTTGATCCGTATAAAGTTAATGG
AAAGGAAACCCGAAGAGATATCGGAAACTATCGTTCAGCAGCTGAAGTATCTTGGATGTC
TGTTGGAAAGGATCAACTAGAATATGCATCTGAAGCTTTAAAGAAGTTCAGATTTCTAGT
GGAACAATTGTCAAAGGTTAATCCTAGCTGTATGGATCGCGATCAGCGGCTAGCCTTTTG
GATTAACTTATACAATGCTTTGATAATGCATGCGTATTTGGCATACGGAGTACCTCGAAA
TGACATCAAGCTTTTTTCTCTGATGCAAAAGGCTTGTTACACAGTTGGCGGCCAGTCCTT
CAGCGCAGCAGAAATAGAGTTTGTGATTCTAAAGATGAAGACTCCAGTTCATCGGCCCCA
ACTTTCTTTGATGTTGACTCTGAATAAGTTCAAGATTACTGAGGATCACAAGAAGTACTC
AATCGATGAATTCGAACCCCTTCTTTTGTTCGGACTTAGCTGTGGAATGTTCTCTTCTCC
TGCTGTACGCATATTCTCCGCTGCAAATGTTAGGCAGGAGCTCCAGGAATCTCTGAGAGA
CTATATTCAGGCGACTGTCGGTACAAATGGCAAAGGGAAGCTGCTGATCCCGAAGCTAGT
GCAGAGCTACGCCAAGGGAGCTGTCGAGGACTCTCTGCTCGCAGACTGGATCTGCCACCA
CCTTGCACCTGATCAAGCCACGGTCATCCGGGACTCTTCCTCGCAGTGGAAGCAGCGGCT
ACTCGGAGCTCGAAGCTTCACCGTTCTCGCCTTCGACTCCAAGTTCCGGTACCTCTTCTT
GCCAGACAGCTGTGGCTCCCAGAGCCAGAAGCCAGAGGCAAAGCAATCTTACAAACTTCC
TGAGCCGTGTTCAGAATCAGAATAGATAATAAGAGCTCAGTTTGGTATATTTGGACCATC
ATACATTCTTTTGCATAGCGGGCCATGTGATTGGCAGTTGTATATGATGTAAATTTTGAG
GAAGCTTGAATTGCTGTGTTTGCAAAACCGGATCCTCTCCACGGAGTTGGTGGCAATTTG
GGGGTCGTATTGGTTTTCTTTTGTATTCACTTGTCTTCCATACTGAAGATAACATTCTTT
TGTTGTTTTTGT