Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d015234_T010
CDS Infomation

cds chromosome:B73_RefGen_v4:5:80281341:80289586:-1 gene:Zm00001d015234 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cycloartenol synthase
Sequence

ATGTGGCGCCTGCGGATCGCGGAGGGGGGCGGGGACCCCTGGCTACGCACGAAGAACGCC
CACGTCGGCCGCCAGGTGTGGGAGTTCGACGCCGCCGCCGACCCCGACCCCGCCGTCGAC
GCCGCGCGCCGCGCCTTCGTCGCCACCAGGGGCCACCTCAAGCACAGCGCCGACCTCCTC
ATGCGCATCCAGTTCGCCAAAGAAAACTCGATTGAGCTTCACCTTCCAGGCATCAAGCTC
GGTGAGCATGAAGATGTGACCGAGGAAGCTGTGTTGACTACATTGAAAAGGGCAATCAGC
CGTTTCTCTACTCTCCAGGCACATGATGGACACTGGCCTGGGGATTATGGTGGTCCTATG
TTCCTTATGCCAGGCTTGATCATAACATTGTATGTGACTGGAGCACTAAACACTGTCTTG
TCATTGGAACACCAGAAGGAGATCCGCCGGTATCTTTATAATCACCAGAATGAAGATGGC
GGCTGGGGCTTGCACATTGAGGGTCCAAGCACCATGTTCGGCTCAGCACTGACCTATGTT
ATTTTGAGATTGCTTGGAGAGGGACCAGATAGTGGAGATGGAGCCATGGAGAAAGGTCGA
AACTGGATATTAGACCATGGTGGAGCAACATATATAACATCGTGGGGGAAGTTTTGGCTT
TCGGTACTAGGTGTATTTGAATGGTCTGGTAACAACCCGGTGCCACCAGAAGTATGGCTA
CTGCCATATCTCCTCCCATTTCACCCAGGGAGGATGTGGTGTCATTGTCGAATGGTGTAT
TTGCCAATGTGCTACATTTATGGGAAGAGGTTTGTTGGCCGAATCACACCACTTCTGTTG
GAATTAAGGAAGGAACTTTTCAAAGACCCTTACAGCAAGATTGATTGGGACAAGGCCCGC
AACCTATGTGCCAAGGAAGATCTGTACTACCCACACCCATTCGTTCAAGATGTGTTGTGG
GCCACTCTCCATAAATTCGTTGAACCAGTTATGATGCATTGGCCTGGCAGCAAATTGAGG
GAGAAAGCTCTGGAAACAGTCATGCAACATGTTCATTATGAAGATGAGAACACTCGTTAT
ATTTGCATTGGTCCTGTAAACAAGGTATTGAATATGCTTGCTTGCTGGATTGAAGATCCA
AACTCGGAGGCCTTCAAACTTCATATCCCACGAGTCTATGATTACTTGTGGCTTGCTGAA
GATGGCATGAAGATGCAGGGTTATAATGGCAGCCAACTTTGGGATACAGCTTTCACAGTT
CAAGCCATTGTGGCTACCAACCTTATTGAAGAGTTTGGTCCTACCCTTAAACTAGCACAC
AACTATATCAAGAATTCACAGGTTCTTGATGACTGCCCTGGTGATCTGAATGACTGGTAC
CGCCACACATCTAAAGGTGCATGGCCATTCTCAACTGCTGATCATGGTTGGCCTATATCT
GATTGCACTGCTGAAGGACTAAAGGCTTCATTATTGTTATCAAGGATCTCTCCCAAAATT
GTTGGTGAACCGATGGAAGCTAATAGATTTTATGATGCTGTCAGTTGTCTGATGTCTTAT
ATGAATGATAATGGCGGTTTCGCGACATATGAACTCACAAGATCTTATCCCTGGTTGGAG
CTGATCAATCCCGCTGAGACCTTTGGGGATATTGTGATTGATTACCCGTATGTTGAATGT
ACATCAGCAGCAATTCAGGCCCTGACATCATTCAAAAAACTATACCCTGGGCACCGCAGG
AAAGAGGTGGATAACTGTATCAGCAAAGCTTCCAATTTCATCGAGAGTATTCAGAAAAGC
GATGGTTCATGGTATGGCTCTTGGGCCGTCTGTTTCACATACGGCACTTGGTTTGGTGTG
AAGGGACTAATTGCTGCTGGTAGAACATTTGAGAACAGTCCTGCAATTAGAAAGGCATGC
GACTTTCTGTTGTCAAAAGAACTTCCTTCCGGTGGTTGGGGAGAAAGCTATTTGTCATCT
CAAGACCAGGTTTACACCAATCTCAAAGGCAACCGGCCTCATGCGGTGAACACTAGTTGG
GCCATGCTGGCGCTGATTGATGCGGGCCAGGCCGAGAGAGATCCAACGCCTCTACACCGA
GCAGCAAAGGTTTTGATCAACTTACAATCAGAGGACGGAGAATTTCCTCAGCAAGAGATC
ATAGGAGTGTTCAACAAGAACTGCATGATAAGCTACTCCCAGTACAGGAACATCTTCCCG
ATTTGGGCTCTGGGTGAGTACCGGTGTCGAGTCTTGGGGGCTGGCAAGCCTTGGCGGTGA

Peptide Sequence

PEP ID

Zm00001d015234_P010
PEP Infomation

pep chromosome:B73_RefGen_v4:5:80281341:80289586:-1 gene:Zm00001d015234 transcript:Zm00001d015234_T010 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cycloartenol synthase
Sequence

MWRLRIAEGGGDPWLRTKNAHVGRQVWEFDAAADPDPAVDAARRAFVATRGHLKHSADLL
MRIQFAKENSIELHLPGIKLGEHEDVTEEAVLTTLKRAISRFSTLQAHDGHWPGDYGGPM
FLMPGLIITLYVTGALNTVLSLEHQKEIRRYLYNHQNEDGGWGLHIEGPSTMFGSALTYV
ILRLLGEGPDSGDGAMEKGRNWILDHGGATYITSWGKFWLSVLGVFEWSGNNPVPPEVWL
LPYLLPFHPGRMWCHCRMVYLPMCYIYGKRFVGRITPLLLELRKELFKDPYSKIDWDKAR
NLCAKEDLYYPHPFVQDVLWATLHKFVEPVMMHWPGSKLREKALETVMQHVHYEDENTRY
ICIGPVNKVLNMLACWIEDPNSEAFKLHIPRVYDYLWLAEDGMKMQGYNGSQLWDTAFTV
QAIVATNLIEEFGPTLKLAHNYIKNSQVLDDCPGDLNDWYRHTSKGAWPFSTADHGWPIS
DCTAEGLKASLLLSRISPKIVGEPMEANRFYDAVSCLMSYMNDNGGFATYELTRSYPWLE
LINPAETFGDIVIDYPYVECTSAAIQALTSFKKLYPGHRRKEVDNCISKASNFIESIQKS
DGSWYGSWAVCFTYGTWFGVKGLIAAGRTFENSPAIRKACDFLLSKELPSGGWGESYLSS
QDQVYTNLKGNRPHAVNTSWAMLALIDAGQAERDPTPLHRAAKVLINLQSEDGEFPQQEI
IGVFNKNCMISYSQYRNIFPIWALGEYRCRVLGAGKPWR

Transcript Sequence

Transcript ID

Zm00001d015234_T010
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:80281341:80289586:-1 gene:Zm00001d015234 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cycloartenol synthase
Sequence

CTGTCCTCCCTGGACTCCCCTCGCCATTCATCAACGCCCGCCACAGAGGGGGATCCCGGC
CTCCCGGTGCCGGGAGCCAAGCCAAGCCACGCACCGGCCGGCCGCGGCGGATCGGAACCT
TCCCCACCGCTCGCCCGCCGCATTTGAGGAGGGCGATGTGGCGCCTGCGGATCGCGGAGG
GGGGCGGGGACCCCTGGCTACGCACGAAGAACGCCCACGTCGGCCGCCAGGTGTGGGAGT
TCGACGCCGCCGCCGACCCCGACCCCGCCGTCGACGCCGCGCGCCGCGCCTTCGTCGCCA
CCAGGGGCCACCTCAAGCACAGCGCCGACCTCCTCATGCGCATCCAGTTCGCCAAAGAAA
ACTCGATTGAGCTTCACCTTCCAGGCATCAAGCTCGGTGAGCATGAAGATGTGACCGAGG
AAGCTGTGTTGACTACATTGAAAAGGGCAATCAGCCGTTTCTCTACTCTCCAGGCACATG
ATGGACACTGGCCTGGGGATTATGGTGGTCCTATGTTCCTTATGCCAGGCTTGATCATAA
CATTGTATGTGACTGGAGCACTAAACACTGTCTTGTCATTGGAACACCAGAAGGAGATCC
GCCGGTATCTTTATAATCACCAGAATGAAGATGGCGGCTGGGGCTTGCACATTGAGGGTC
CAAGCACCATGTTCGGCTCAGCACTGACCTATGTTATTTTGAGATTGCTTGGAGAGGGAC
CAGATAGTGGAGATGGAGCCATGGAGAAAGGTCGAAACTGGATATTAGACCATGGTGGAG
CAACATATATAACATCGTGGGGGAAGTTTTGGCTTTCGGTACTAGGTGTATTTGAATGGT
CTGGTAACAACCCGGTGCCACCAGAAGTATGGCTACTGCCATATCTCCTCCCATTTCACC
CAGGGAGGATGTGGTGTCATTGTCGAATGGTGTATTTGCCAATGTGCTACATTTATGGGA
AGAGGTTTGTTGGCCGAATCACACCACTTCTGTTGGAATTAAGGAAGGAACTTTTCAAAG
ACCCTTACAGCAAGATTGATTGGGACAAGGCCCGCAACCTATGTGCCAAGGAAGATCTGT
ACTACCCACACCCATTCGTTCAAGATGTGTTGTGGGCCACTCTCCATAAATTCGTTGAAC
CAGTTATGATGCATTGGCCTGGCAGCAAATTGAGGGAGAAAGCTCTGGAAACAGTCATGC
AACATGTTCATTATGAAGATGAGAACACTCGTTATATTTGCATTGGTCCTGTAAACAAGG
TATTGAATATGCTTGCTTGCTGGATTGAAGATCCAAACTCGGAGGCCTTCAAACTTCATA
TCCCACGAGTCTATGATTACTTGTGGCTTGCTGAAGATGGCATGAAGATGCAGGGTTATA
ATGGCAGCCAACTTTGGGATACAGCTTTCACAGTTCAAGCCATTGTGGCTACCAACCTTA
TTGAAGAGTTTGGTCCTACCCTTAAACTAGCACACAACTATATCAAGAATTCACAGGTTC
TTGATGACTGCCCTGGTGATCTGAATGACTGGTACCGCCACACATCTAAAGGTGCATGGC
CATTCTCAACTGCTGATCATGGTTGGCCTATATCTGATTGCACTGCTGAAGGACTAAAGG
CTTCATTATTGTTATCAAGGATCTCTCCCAAAATTGTTGGTGAACCGATGGAAGCTAATA
GATTTTATGATGCTGTCAGTTGTCTGATGTCTTATATGAATGATAATGGCGGTTTCGCGA
CATATGAACTCACAAGATCTTATCCCTGGTTGGAGCTGATCAATCCCGCTGAGACCTTTG
GGGATATTGTGATTGATTACCCGTATGTTGAATGTACATCAGCAGCAATTCAGGCCCTGA
CATCATTCAAAAAACTATACCCTGGGCACCGCAGGAAAGAGGTGGATAACTGTATCAGCA
AAGCTTCCAATTTCATCGAGAGTATTCAGAAAAGCGATGGTTCATGGTATGGCTCTTGGG
CCGTCTGTTTCACATACGGCACTTGGTTTGGTGTGAAGGGACTAATTGCTGCTGGTAGAA
CATTTGAGAACAGTCCTGCAATTAGAAAGGCATGCGACTTTCTGTTGTCAAAAGAACTTC
CTTCCGGTGGTTGGGGAGAAAGCTATTTGTCATCTCAAGACCAGGTTTACACCAATCTCA
AAGGCAACCGGCCTCATGCGGTGAACACTAGTTGGGCCATGCTGGCGCTGATTGATGCGG
GCCAGGCCGAGAGAGATCCAACGCCTCTACACCGAGCAGCAAAGGTTTTGATCAACTTAC
AATCAGAGGACGGAGAATTTCCTCAGCAAGAGATCATAGGAGTGTTCAACAAGAACTGCA
TGATAAGCTACTCCCAGTACAGGAACATCTTCCCGATTTGGGCTCTGGGTGAGTACCGGT
GTCGAGTCTTGGGGGCTGGCAAGCCTTGGCGGTGAACGGG