Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d015231_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:5:80210465:80215267:1 gene:Zm00001d015231 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glucan endo-1%2C3-beta-glucosidase 6

Sequence

ATGGGTTCCCGGTCCGGCTGTGGAGCGGCGATGGCGGCGGCCGCGGCCGCGGTGTTGGTT
TCTTGGCTGTGCTTCGCGGCGGCCGGCGTCGGCGCGATAGGGGCGAACTGGGGCACGCAG
GCGAGCCACCCGCTGCCGCCGGAGACGGTGGTGCGGATGCTCAAGGACAATGGGTTCCAG
AAGGTCAAGCTGTTCGACGCCGAGGAGGGCACCATGAGCGCCCTCAGGAAGAGCGGGCTG
GAGGTGATGGTCGGCATCCCCAACGACTTGCTGTCCACGATGGCCACCAGCATGAAGGCC
GCGGAGAAGTGGGTCGACACCAACGTCTCCAGCTACCTCAACGACGGCGTCAGCATCAGG
TATGTTGCAGTCGGGAATGAGCCTTTCTTGGAGACATACAACGGAAGCTTCCTGCAGTCC
ACTTTCCCCGCCATCAGGAACATACAAGGCGCGCTCATAAAAGCCGGCCTGGGCAACCAA
GTCAAGGTGACATGCCCTCTCAACGCCGATGTCTACTCCTCGACGACCTCCAAGCCTTCC
GACGGGGACTTCCGCACGGACATCCACGACCTGATGCTCACCATAGTGAAGTTCCTGAGC
GACAACGGCGGTGCCTTCACCGTCAACATCTACCCGTTCATAAGCCTCTACATCGACCCG
AACTTCCCCGTGGACTACGCCTTCTTCGAGGGGGCCTCGTCGCCGATTGTGGACGGCTCC
TTCACCTACAGCAACATGTTCGACGCGAACCACGACACGCTGATATGGGCGCTGAAGAAG
AACGGGTTCGGGAACCTGCCCGTGATCGTCGGCGAGATCGGGTGGCCGACGGACGGCGAC
CGGAACGCCAACGCCCAGATGGCGCAGCGCTTCAACCAGGGCTTCATGACCCACATCGCC
TCCGGGCGGGGCACGCCGATGCGGCCCGGACCCGTCGACGCCTACCTGTTCAGCCTGATC
GACGAGGACGACAAGAGCATCCAGCCAGGGAACTTCGAGCGGCACTGGGGCATCTTCACC
TACGACGGCCTGCCCAAGTACCAGCTGAACCTGGGGACGTCGAACGCGGGCGGCGGTCTC
GTGAGAGCCAAGGGCGTGAAGTACCTCGAGAGGAAGTGGTGCGTGCTGAAGCCTTCTGTG
AACCTCAACGACCCGAAGCTCGCCGACAACGTGGGATACGCGTGCTCCATGGCGGACTGC
ACCAGCCTTGGCTACAAGACGTCGTGCGGGATGCTGGACATCCGCGGCAACGTCTCGTAC
GCGTTCAACAACTACTTCCAGAAGAACGACCAGGACGACGTGGCCTGCGGGTTCCAGGGC
CTCGCGACGACCACGGGCCAGGACCCCAGCACCGGGACCTGCAGGTTCGGGGTCATGATC
GAGGTCGACTCCGCCTTCTCGTGGAGGCTGCAGGGGCTTGGGAGCAACCTCCTCCTGTTC
CTCCTGCTTGGGGTTCTCCAGCTATCCCTGTCCTTCTCTTAG

Peptide Sequence

PEP ID

Zm00001d015231_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:5:80210465:80215267:1 gene:Zm00001d015231 transcript:Zm00001d015231_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glucan endo-1%2C3-beta-glucosidase 6

Sequence

MGSRSGCGAAMAAAAAAVLVSWLCFAAAGVGAIGANWGTQASHPLPPETVVRMLKDNGFQ
KVKLFDAEEGTMSALRKSGLEVMVGIPNDLLSTMATSMKAAEKWVDTNVSSYLNDGVSIR
YVAVGNEPFLETYNGSFLQSTFPAIRNIQGALIKAGLGNQVKVTCPLNADVYSSTTSKPS
DGDFRTDIHDLMLTIVKFLSDNGGAFTVNIYPFISLYIDPNFPVDYAFFEGASSPIVDGS
FTYSNMFDANHDTLIWALKKNGFGNLPVIVGEIGWPTDGDRNANAQMAQRFNQGFMTHIA
SGRGTPMRPGPVDAYLFSLIDEDDKSIQPGNFERHWGIFTYDGLPKYQLNLGTSNAGGGL
VRAKGVKYLERKWCVLKPSVNLNDPKLADNVGYACSMADCTSLGYKTSCGMLDIRGNVSY
AFNNYFQKNDQDDVACGFQGLATTTGQDPSTGTCRFGVMIEVDSAFSWRLQGLGSNLLLF
LLLGVLQLSLSFS

Transcript Sequence

Transcript ID

Zm00001d015231_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:80210465:80215267:1 gene:Zm00001d015231 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glucan endo-1%2C3-beta-glucosidase 6

Sequence

ATCCTCTCCCTCAATCTTTGTCACAGCGCATTTCATCACTGTTCGGCAGTGCTGTCACCG
CTAGCAACTGCAGTGTGTGAGTTCACAGCTCAGTGAGCAGCTCCTGAGGCTCTCGGAGTT
GAAAGCTCATCCAGTTTTGGGGGGGATCACCTATTTTGGAGTCACCTTGCCGTCGTCATC
AGCCAATTTACTCACACACCTGACGGCCTGCATGCCATCAATGCTCGCTCCCCTCCCCTG
ATGACTGAGGTGTTTATCATCTTCGGCTTTTGGAGGTCCACAAATTCTCGAGTTGTTGGG
AAAATCGGGCTGGCCTCTTATTAGAGCCCTTTTGGCCCTTGCTCCTCTTTCCAGCAGAGG
TTTCAACTTCTCTTTCCCCCCTGAGGTTTCGTGAGCGCAGCAGTAAGGTTTCTGAAACTG
TTCTTGGAGGTTTGCTCTCGCCGGTTTCCACTGTCCCTGCTTTATCTGCCTGGGACGGCT
CCAAGATCTGAGCTTGGGGGCGTTCTTGGTGCAAAGCGGAGCAATCCACCAAACCGCCCC
GGGATTTGGAGCTGGAATAATCCTTCCATGGGTTCCCGGTCCGGCTGTGGAGCGGCGATG
GCGGCGGCCGCGGCCGCGGTGTTGGTTTCTTGGCTGTGCTTCGCGGCGGCCGGCGTCGGC
GCGATAGGGGCGAACTGGGGCACGCAGGCGAGCCACCCGCTGCCGCCGGAGACGGTGGTG
CGGATGCTCAAGGACAATGGGTTCCAGAAGGTCAAGCTGTTCGACGCCGAGGAGGGCACC
ATGAGCGCCCTCAGGAAGAGCGGGCTGGAGGTGATGGTCGGCATCCCCAACGACTTGCTG
TCCACGATGGCCACCAGCATGAAGGCCGCGGAGAAGTGGGTCGACACCAACGTCTCCAGC
TACCTCAACGACGGCGTCAGCATCAGGTATGTTGCAGTCGGGAATGAGCCTTTCTTGGAG
ACATACAACGGAAGCTTCCTGCAGTCCACTTTCCCCGCCATCAGGAACATACAAGGCGCG
CTCATAAAAGCCGGCCTGGGCAACCAAGTCAAGGTGACATGCCCTCTCAACGCCGATGTC
TACTCCTCGACGACCTCCAAGCCTTCCGACGGGGACTTCCGCACGGACATCCACGACCTG
ATGCTCACCATAGTGAAGTTCCTGAGCGACAACGGCGGTGCCTTCACCGTCAACATCTAC
CCGTTCATAAGCCTCTACATCGACCCGAACTTCCCCGTGGACTACGCCTTCTTCGAGGGG
GCCTCGTCGCCGATTGTGGACGGCTCCTTCACCTACAGCAACATGTTCGACGCGAACCAC
GACACGCTGATATGGGCGCTGAAGAAGAACGGGTTCGGGAACCTGCCCGTGATCGTCGGC
GAGATCGGGTGGCCGACGGACGGCGACCGGAACGCCAACGCCCAGATGGCGCAGCGCTTC
AACCAGGGCTTCATGACCCACATCGCCTCCGGGCGGGGCACGCCGATGCGGCCCGGACCC
GTCGACGCCTACCTGTTCAGCCTGATCGACGAGGACGACAAGAGCATCCAGCCAGGGAAC
TTCGAGCGGCACTGGGGCATCTTCACCTACGACGGCCTGCCCAAGTACCAGCTGAACCTG
GGGACGTCGAACGCGGGCGGCGGTCTCGTGAGAGCCAAGGGCGTGAAGTACCTCGAGAGG
AAGTGGTGCGTGCTGAAGCCTTCTGTGAACCTCAACGACCCGAAGCTCGCCGACAACGTG
GGATACGCGTGCTCCATGGCGGACTGCACCAGCCTTGGCTACAAGACGTCGTGCGGGATG
CTGGACATCCGCGGCAACGTCTCGTACGCGTTCAACAACTACTTCCAGAAGAACGACCAG
GACGACGTGGCCTGCGGGTTCCAGGGCCTCGCGACGACCACGGGCCAGGACCCCAGCACC
GGGACCTGCAGGTTCGGGGTCATGATCGAGGTCGACTCCGCCTTCTCGTGGAGGCTGCAG
GGGCTTGGGAGCAACCTCCTCCTGTTCCTCCTGCTTGGGGTTCTCCAGCTATCCCTGTCC
TTCTCTTAGACGCAGAGGTTCTGCGAGGGATGGGTGGGGTGGCAGTGAGCGCATAAACAG
TCTGACAACAGCTTGAGGATATTAGATGTGTGTTGTCAGTGCCATTCATTTAGAAACTCT
TTCCTCTA