Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Zea mays ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d015208_T004
CDS Infomation	cds chromosome:B73_RefGen_v4:5:79389808:79394795:1 gene:Zm00001d015208 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cleavage and polyadenylation specificity factor (CPSF) A subunit protein
Sequence	ATGTACCTCTACAGCCTGACGCTACAGCGCGCGACGGGCGCGGTGTGCGCCGTCATCGGC AGCTTCAGCGGGCGGGACTCGAAGAAGTCCGCCGCCTCCGGGTCCGGCTCCACGCAAGAG ATCGCCGTGGCCCGGGGCAGCACGCTCGACCTCCTCCGCCCGGACCCGGAGACGGGCCGC CTCCGCACGCTCCTCTCCGTCGACGTCTTCGGCGCCATCCGCTCGCTCGCGCAGTTCCGC CTCACCGGCGCCAACAAGGATTACCTCGTCGTCGGCTCCGACTCGGGCCGCCTCGTCATC CTCGAGTACTCCCCCGACCGCAACCGCCTCGACAAGGTCCACCAGGAGACCTTTGGCAAG TCGGGCTGCCGCCGTATCGTCCCCGGCCAGCTCCTCGCCGTCGACCCAAAGGGCCGCGCG CTCTGCATCGCCGCGCTCGAGAAGCAGAAGCTCGTCTACGTCCTCAATCGCGACGCCGCC GCGCGCCTCACCATCTCGTCCCCGCTCGAGGCGCACAAGTCCAACACTCTCACCTTCGCC CTCGCCGCGCTCGACTGTGGGTTCGACAACCCCGTCTTCGCCGCCATCGAGCTCGAGTAC GCCGAGTCTGACCGCGACCCCACGGGGCAGGCCGCCAACCAGGCGCAGAAGCTCCTCACC TTCTACGAGCTTGACCTGGGGCTCAACCATGTCTCCCGCAAGGTCTCTGAGCCGATTGAT AATGGTGCCAATCTTCTCGTGACTGTACCGGGTGGTGGTGACGGTCCCAGCGGTGTTCTC GTGTGCTGTGATAACTTCGTGCTGTACCGGAACCAGGGCCACCCAGAGATTCGTGCTGTT ATTCCACGCCGTGCTGACCTCCCTGCTGAGCGTGGCGTCCTCATTGTCGCAGCCGCCACA CACAAACAAAAGAGTATGTTCTTCTTCCTGCTACAGACTGAGTATGGTGACATATTCAAG GTTGACCTCGATCATAATGGGGATGCTGTTAGTGAGCTCAGGATCAAGTACTTTGACACC ATACCAGTGACATCGGCTGTCTGTGTGCTGCGCTCCGGTTTCCTCTTTGCTGCTTCTGAG TTTGGCAACCATGCACTTTACCAGTTCCGTGATATTGGTAGAGAAGCCGATGTTGAGTCA TCTTCTGCAACACTGATGGAGACAGAGGAGGGATTCCAGCCAGTTTTCTTTCAGCCAAGG GCACTGAAGAACCTCATGCGCATAGATGAGATTGAGAGCCTCATGCCAGTCATGGACATG CGTGTCGCGAATTTATTCGATGAGGAAACACCCCAGTTGTTCACTGCCTGTGGCCGTGGT CCACGCTCCACGTTGCGCATCCTGAGGCCTGGCCTTGCCATCAGTGAGATGGCCCGATCA ATGCTGCCTGCTGAGCCTATTGCTGTGTGGACTGTCAAGAAGAACATCAATGACATGTTT GATGCTTACATTGTAGTGTCCTTTACTAATGTCACGCTTGTGCTCTCTATTGGTGAGACT ATTGAAGAAGTCAGCGACAGCCAGTTCCTGGACACGACTCACTCCCTTGCAGTCACGCTC CTTGGTGAGGACTCTCTAATGCAGGTCCATCCAAATGGCATCAGGCACATCAGGGAAGAT GGCCGTGTCAATGAGTGGAGGACGCCTGGAAAGAAAACTATTACGAAGGTTGGATCAAAC CGTCTCCAGGTGGTAATTGCTCTTAGTGGTGGAGAGCTCATCTATTTTGAGATGGATATG ACTGGTCAGCTCATGGAGGTAGAGAAGCAGGACATGTCTGGTGATGTTGCGTGCCTGGCC ATTGCACCGGTCCCTGAGGGGAGGCAAAGGTCCAGATTTCTTGCCGTAGGATCCTATGAT AACACCATTCGTATCCTCTCATTGGATCCTGATGATTGCCTGCAGCCTCTAAGCGTCCAG AGTGTATCATCGGCACCAGAGTCACTCCTATTCTTGGAGGTCCAGGCATCAGTTGGTGGT GAGGATGGTGCAGATTATCCAGCCAACCTTTTCCTCAATGCTGGTTTGCAGAATGGTGTT CTTTTCCGTACCAACGTCGACATGGTTACGGGTCAGCTATCTGACACACGTTCTCGATTC CTAGGCCTGAGACCTCCAAAGCTGTTCCCTTGTATAGTTAGCCACAGGCAAGCAATGCTC TGCCTGTCCAGCCGTCCTTGGCTGGGTTACATACATCAAGGCCATTTTCTCTTGACACCA CTGTCCTGTGATACACTCGAATCTGCAGCATCATTTTCTTCTGATCAGTGTTCAGAAGGT GTAGTTGCTGTTGCGGGAGATGCCTTACGTATTTTCACCATTGAACGCCTGGGAGAGACT TTCAATGAGACGGCAATCCCTCTGCGGTACACCCCAAGGAAGTTTGTGATTCTACCAAAG AAAAAATACATTGCTGTCATTGAGAGTGACAAAGGTGCATTCAGCGCAGAAGAGCGAGAA GCTGCTAAGAAAGAGTGCCTTGATGCTTCTGGTGCAGCGGAGAATGGAAATGCGAATAAT GGCGATCCTATGGAGAATGGTGATGGTCAAGATGGTGCCGAGGAGGGCAACACATTTCCT GATGAACAATATGGTTATCCAAAAGCTGAATCTGAGAGGTGGGTTTCCTGCATTAGGATC TTGGATCCAAGGAGTAGGGACACAACCTGTCTGCTGGAATTGCAGGACAATGAGGCTGCT GTCAGTATCTGCACTGTGAATTTCCATGATAAGGAGCATGGAACTCTACTGGCTATTGGC ACTGCCAAGGGTTTGCAGTTCTGGCCAAGGAGGACCCTTGCTGGTGGATTCATCCACGTA TATAAGTTTGTGGATGAAGGGAGGTCACTTGAACTTCTACACAAGACACAGGTGGAGGAA GTACCTCTTGCATTGTGCCAATTCCAGGGGCGATTACTTGCAGGTGTTGGTTCAGTGCTC AGACTATATGATCTGGGTAAAAGAAAATTGCTCAGAAAATGTGAAAACAAGCTTTTTCCG AGGACATTAGTATCTATTCATACCTACCGTGATAGAATCTATGTTGGCGATATGCAAGAG TCATTTCACTATTGCAAGTACAGACGAGATGAAAACCAACTCTATATATTTGCTGATGAC AGTGTTCCCAGGTGGCTTACAACAGCACAACACATAGATTTTGACACTATGGCTGGAGCA GATAAGTTTGGGAATATATATTTTGCTCGTCTTCCTCAGGATATCTCAGATGAGATTGAA GAAGACCCAACTGGAGGCAAGATTAAGTGGGAGCAAGGGAAGTTAAATGGTGCCCCTAAC AAAGTTGAGGAGATTGTGCAGTTTCATGTGGGTGATGTTGTAACGTGTTTGCAGAAGGCC TCTTTGATTCCTGGTGGAGGTGAATGTCTTATTTATGGGACTGTGATGGGCAGTGTGGGA GCACTGCTTGCATTTACCTCCAGGGAAGATGTTGATTTCTTCTCTCACTTGGAGATGCAT CTGCGTCAGGAGCATCCACCATTGTGTGGAAGAGATCACATGGCTTACAGATCTGCCTAT TTTCCAGTGAAGGTAAAATGTTCCTTGAATTGGATTTGTTAA

Peptide Sequence

PEP ID	Zm00001d015208_P004
PEP Infomation	pep chromosome:B73_RefGen_v4:5:79389808:79394795:1 gene:Zm00001d015208 transcript:Zm00001d015208_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cleavage and polyadenylation specificity factor (CPSF) A subunit protein
Sequence	MYLYSLTLQRATGAVCAVIGSFSGRDSKKSAASGSGSTQEIAVARGSTLDLLRPDPETGR LRTLLSVDVFGAIRSLAQFRLTGANKDYLVVGSDSGRLVILEYSPDRNRLDKVHQETFGK SGCRRIVPGQLLAVDPKGRALCIAALEKQKLVYVLNRDAAARLTISSPLEAHKSNTLTFA LAALDCGFDNPVFAAIELEYAESDRDPTGQAANQAQKLLTFYELDLGLNHVSRKVSEPID NGANLLVTVPGGGDGPSGVLVCCDNFVLYRNQGHPEIRAVIPRRADLPAERGVLIVAAAT HKQKSMFFFLLQTEYGDIFKVDLDHNGDAVSELRIKYFDTIPVTSAVCVLRSGFLFAASE FGNHALYQFRDIGREADVESSSATLMETEEGFQPVFFQPRALKNLMRIDEIESLMPVMDM RVANLFDEETPQLFTACGRGPRSTLRILRPGLAISEMARSMLPAEPIAVWTVKKNINDMF DAYIVVSFTNVTLVLSIGETIEEVSDSQFLDTTHSLAVTLLGEDSLMQVHPNGIRHIRED GRVNEWRTPGKKTITKVGSNRLQVVIALSGGELIYFEMDMTGQLMEVEKQDMSGDVACLA IAPVPEGRQRSRFLAVGSYDNTIRILSLDPDDCLQPLSVQSVSSAPESLLFLEVQASVGG EDGADYPANLFLNAGLQNGVLFRTNVDMVTGQLSDTRSRFLGLRPPKLFPCIVSHRQAML CLSSRPWLGYIHQGHFLLTPLSCDTLESAASFSSDQCSEGVVAVAGDALRIFTIERLGET FNETAIPLRYTPRKFVILPKKKYIAVIESDKGAFSAEEREAAKKECLDASGAAENGNANN GDPMENGDGQDGAEEGNTFPDEQYGYPKAESERWVSCIRILDPRSRDTTCLLELQDNEAA VSICTVNFHDKEHGTLLAIGTAKGLQFWPRRTLAGGFIHVYKFVDEGRSLELLHKTQVEE VPLALCQFQGRLLAGVGSVLRLYDLGKRKLLRKCENKLFPRTLVSIHTYRDRIYVGDMQE SFHYCKYRRDENQLYIFADDSVPRWLTTAQHIDFDTMAGADKFGNIYFARLPQDISDEIE EDPTGGKIKWEQGKLNGAPNKVEEIVQFHVGDVVTCLQKASLIPGGGECLIYGTVMGSVG ALLAFTSREDVDFFSHLEMHLRQEHPPLCGRDHMAYRSAYFPVKVKCSLNWIC

Transcript Sequence

Transcript ID	Zm00001d015208_T004
Transcript Infomation	cdna chromosome:B73_RefGen_v4:5:79389808:79394795:1 gene:Zm00001d015208 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cleavage and polyadenylation specificity factor (CPSF) A subunit protein
Sequence	CCGCCCGCCCGTTCTAAAACCCTAGATCTCTCTCCCCTCACCCCCGTCCCTCGACCCGCC GCCGAGTCGCCGGAGGAGGCGGGGGCCTCGCCGCAGAAGCCATGTACCTCTACAGCCTGA CGCTACAGCGCGCGACGGGCGCGGTGTGCGCCGTCATCGGCAGCTTCAGCGGGCGGGACT CGAAGAAGTCCGCCGCCTCCGGGTCCGGCTCCACGCAAGAGATCGCCGTGGCCCGGGGCA GCACGCTCGACCTCCTCCGCCCGGACCCGGAGACGGGCCGCCTCCGCACGCTCCTCTCCG TCGACGTCTTCGGCGCCATCCGCTCGCTCGCGCAGTTCCGCCTCACCGGCGCCAACAAGG ATTACCTCGTCGTCGGCTCCGACTCGGGCCGCCTCGTCATCCTCGAGTACTCCCCCGACC GCAACCGCCTCGACAAGGTCCACCAGGAGACCTTTGGCAAGTCGGGCTGCCGCCGTATCG TCCCCGGCCAGCTCCTCGCCGTCGACCCAAAGGGCCGCGCGCTCTGCATCGCCGCGCTCG AGAAGCAGAAGCTCGTCTACGTCCTCAATCGCGACGCCGCCGCGCGCCTCACCATCTCGT CCCCGCTCGAGGCGCACAAGTCCAACACTCTCACCTTCGCCCTCGCCGCGCTCGACTGTG GGTTCGACAACCCCGTCTTCGCCGCCATCGAGCTCGAGTACGCCGAGTCTGACCGCGACC CCACGGGGCAGGCCGCCAACCAGGCGCAGAAGCTCCTCACCTTCTACGAGCTTGACCTGG GGCTCAACCATGTCTCCCGCAAGGTCTCTGAGCCGATTGATAATGGTGCCAATCTTCTCG TGACTGTACCGGGTGGTGGTGACGGTCCCAGCGGTGTTCTCGTGTGCTGTGATAACTTCG TGCTGTACCGGAACCAGGGCCACCCAGAGATTCGTGCTGTTATTCCACGCCGTGCTGACC TCCCTGCTGAGCGTGGCGTCCTCATTGTCGCAGCCGCCACACACAAACAAAAGAGTATGT TCTTCTTCCTGCTACAGACTGAGTATGGTGACATATTCAAGGTTGACCTCGATCATAATG GGGATGCTGTTAGTGAGCTCAGGATCAAGTACTTTGACACCATACCAGTGACATCGGCTG TCTGTGTGCTGCGCTCCGGTTTCCTCTTTGCTGCTTCTGAGTTTGGCAACCATGCACTTT ACCAGTTCCGTGATATTGGTAGAGAAGCCGATGTTGAGTCATCTTCTGCAACACTGATGG AGACAGAGGAGGGATTCCAGCCAGTTTTCTTTCAGCCAAGGGCACTGAAGAACCTCATGC GCATAGATGAGATTGAGAGCCTCATGCCAGTCATGGACATGCGTGTCGCGAATTTATTCG ATGAGGAAACACCCCAGTTGTTCACTGCCTGTGGCCGTGGTCCACGCTCCACGTTGCGCA TCCTGAGGCCTGGCCTTGCCATCAGTGAGATGGCCCGATCAATGCTGCCTGCTGAGCCTA TTGCTGTGTGGACTGTCAAGAAGAACATCAATGACATGTTTGATGCTTACATTGTAGTGT CCTTTACTAATGTCACGCTTGTGCTCTCTATTGGTGAGACTATTGAAGAAGTCAGCGACA GCCAGTTCCTGGACACGACTCACTCCCTTGCAGTCACGCTCCTTGGTGAGGACTCTCTAA TGCAGGTCCATCCAAATGGCATCAGGCACATCAGGGAAGATGGCCGTGTCAATGAGTGGA GGACGCCTGGAAAGAAAACTATTACGAAGGTTGGATCAAACCGTCTCCAGGTGGTAATTG CTCTTAGTGGTGGAGAGCTCATCTATTTTGAGATGGATATGACTGGTCAGCTCATGGAGG TAGAGAAGCAGGACATGTCTGGTGATGTTGCGTGCCTGGCCATTGCACCGGTCCCTGAGG GGAGGCAAAGGTCCAGATTTCTTGCCGTAGGATCCTATGATAACACCATTCGTATCCTCT CATTGGATCCTGATGATTGCCTGCAGCCTCTAAGCGTCCAGAGTGTATCATCGGCACCAG AGTCACTCCTATTCTTGGAGGTCCAGGCATCAGTTGGTGGTGAGGATGGTGCAGATTATC CAGCCAACCTTTTCCTCAATGCTGGTTTGCAGAATGGTGTTCTTTTCCGTACCAACGTCG ACATGGTTACGGGTCAGCTATCTGACACACGTTCTCGATTCCTAGGCCTGAGACCTCCAA AGCTGTTCCCTTGTATAGTTAGCCACAGGCAAGCAATGCTCTGCCTGTCCAGCCGTCCTT GGCTGGGTTACATACATCAAGGCCATTTTCTCTTGACACCACTGTCCTGTGATACACTCG AATCTGCAGCATCATTTTCTTCTGATCAGTGTTCAGAAGGTGTAGTTGCTGTTGCGGGAG ATGCCTTACGTATTTTCACCATTGAACGCCTGGGAGAGACTTTCAATGAGACGGCAATCC CTCTGCGGTACACCCCAAGGAAGTTTGTGATTCTACCAAAGAAAAAATACATTGCTGTCA TTGAGAGTGACAAAGGTGCATTCAGCGCAGAAGAGCGAGAAGCTGCTAAGAAAGAGTGCC TTGATGCTTCTGGTGCAGCGGAGAATGGAAATGCGAATAATGGCGATCCTATGGAGAATG GTGATGGTCAAGATGGTGCCGAGGAGGGCAACACATTTCCTGATGAACAATATGGTTATC CAAAAGCTGAATCTGAGAGGTGGGTTTCCTGCATTAGGATCTTGGATCCAAGGAGTAGGG ACACAACCTGTCTGCTGGAATTGCAGGACAATGAGGCTGCTGTCAGTATCTGCACTGTGA ATTTCCATGATAAGGAGCATGGAACTCTACTGGCTATTGGCACTGCCAAGGGTTTGCAGT TCTGGCCAAGGAGGACCCTTGCTGGTGGATTCATCCACGTATATAAGTTTGTGGATGAAG GGAGGTCACTTGAACTTCTACACAAGACACAGGTGGAGGAAGTACCTCTTGCATTGTGCC AATTCCAGGGGCGATTACTTGCAGGTGTTGGTTCAGTGCTCAGACTATATGATCTGGGTA AAAGAAAATTGCTCAGAAAATGTGAAAACAAGCTTTTTCCGAGGACATTAGTATCTATTC ATACCTACCGTGATAGAATCTATGTTGGCGATATGCAAGAGTCATTTCACTATTGCAAGT ACAGACGAGATGAAAACCAACTCTATATATTTGCTGATGACAGTGTTCCCAGGTGGCTTA CAACAGCACAACACATAGATTTTGACACTATGGCTGGAGCAGATAAGTTTGGGAATATAT ATTTTGCTCGTCTTCCTCAGGATATCTCAGATGAGATTGAAGAAGACCCAACTGGAGGCA AGATTAAGTGGGAGCAAGGGAAGTTAAATGGTGCCCCTAACAAAGTTGAGGAGATTGTGC AGTTTCATGTGGGTGATGTTGTAACGTGTTTGCAGAAGGCCTCTTTGATTCCTGGTGGAG GTGAATGTCTTATTTATGGGACTGTGATGGGCAGTGTGGGAGCACTGCTTGCATTTACCT CCAGGGAAGATGTTGATTTCTTCTCTCACTTGGAGATGCATCTGCGTCAGGAGCATCCAC CATTGTGTGGAAGAGATCACATGGCTTACAGATCTGCCTATTTTCCAGTGAAGGTAAAAT GTTCCTTGAATTGGATTTGTTAACCAGGCGATATATAATACTCTGATTCTAATATTCTAC AATGTCACCAAGTGCACATTATGTTAGCATGAGAAAAGACTGATTTAGCATTTTTGTGCT CGCCTTGCAGTAAAAATTAGTTGTCCTCTTGACTTTGTAGCAGTCTAACCTTGAAAAACC ACAGGAATTTACTGCATGAATAATGAATGGTGCCCACAATTCACACAAAGAATAGCACCA TAAATTACCAAATGGAAAATTCATATCCACTGGACTTGGTACAAACTCCTATGTCGTATC GAGTAACTTGATGAAGTTTCATGAGCCCCTCTGGCATGGCATTAATGTGCTTAGTTTGTG ATTAATGATGTACTACAAATTCATTAGATATTGTCAGGCTATGCATAATATATTTAAGTT CGAGTTTATGAAAACCATGCTGACGTGGGCTGCTGCTCATTCACAATTTTATATGTTTGT TTGTTCGTTGTTACAGCTGAACTGCACGATGTGATAGATGGTGATCTCTGCGAGCAGTAT CCCTCCCTCCCAGCTGATATGCAGAGGAAGATTGCTGATGAGCTGGACAGAACTCCGGGT GAAATCCTGAAGAAGCTAGAAGACATCAGGAACAAAATCATCTAAAACAGCGGCTTAGTG TGAAGAAACTAGGCAGGGCAGTGCCGGTGCTCTTTGCTTTAAGACTGTATCCAGTTCGAG CTGTTGCCGCACTTCAAGATGTGACAGCAGCGCATCCAACAAGTTTGGAGCACGCTGATC TGTACGATCTTTCCTGATGCTATCTGGTCCAGTCGGCGATTTATTGCTGAGATAGAGCAT GTACGGCACCAGAATGAGTTTTTTTGTATCTCGTAGAAGTGATTTAGCTGATGTCGTTGA CTGTTTACTTGGCTTGATGTAATTGAGTGAAGTTAT