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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d015009_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:5:72040325:72044623:-1 gene:Zm00001d015009 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:autophagy5 description:Autophagy protein 5
Sequence

ATGGCGGCCACGAGAGGAGAGACTTTGGGACCAAGAATTGGGTATTTGCCCCTCTTGATA
CCTGTTATAAGGGCTCATTTCAGCAATGCACTCCCACCTGGTGTTGACACTGTTTGGTTT
GAATATAAAGGGCTGCCTTTGAAATGGTATGTACCAATTGGTGTTCTTTTTGATCTTCTA
TGTGCAGATCCAGAAAGACCATGGAATCTAATAGTCCATTTTAGGGGATATCCCTCAGAA
ATCTTGTCACCATGCGAGGGTGAAGATAGTGTGAAGTGGAGCTACATGAATTCCCTGAAA
GAGGCCACCTTCATCATTACTGGGAACAGTAAGAGTGTGATGAATATGTCGCATGCTGAT
CAAGTCGCTCTGTGGGAATCTGTAATGAAAGGTAACTTAGATGGGTATAAAAATATCTCC
ACCAGGCTTAAGCTTGGACCATTTGAAGATGATGTGTTAGTACGGACAGCCTCCGTGGAG
CGGCAACGTCAACAAAATTCTGATGAACCTGAATCTCCTGGATCTAGCAAACCGTGTATG
CTCTTTTGCTCTGGGACTTTTATATTGTCATCCATGTTAAAAGTTCATGTGCTTACAAGA
GTTCAATACGGCAGGGTCCCTGTTCGATTATACGTACGCAATGTTCAAGAAGACCTTGAG
TACATAGAACATGCAGTTCCTGTCAGTGACTGGGAAAACGTGTCCTACATAAATCGGCCA
TTTGAGACTCGCAAGGCTGAAGGTAGAAGCTACATCACCCTGGAACATGCGTTGCAAACA
TTGCTTCCGGAGTTCTTCAGCTCAAAGCCCCCAGGCAGCGCTGACGGCTCCCAACACGCA
GGCGCAATGGACGCAGCCGCAGACAGTTCAGATGCCACCAACTCTTCAAGTCGTTCTCAG
GAGGCAGAGCAAGCCCTGGCAAGTCCAGCAGAGGCGGGTTCTGCCAAGAGAGCGAAAGTG
AAGCTGGTGAGGGTGCAAGGTGTTGAGCTCGACATGGACATCCCGTTCCTGTGGGTCGCC
GACCACCTCAAGAACCCCGAATACTACGTCCACATCTGTGTATACGTCGGCACTAGAAAA
CAATAG

Peptide Sequence

PEP ID

Zm00001d015009_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:5:72040325:72044623:-1 gene:Zm00001d015009 transcript:Zm00001d015009_T002 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:autophagy5 description:Autophagy protein 5
Sequence

MAATRGETLGPRIGYLPLLIPVIRAHFSNALPPGVDTVWFEYKGLPLKWYVPIGVLFDLL
CADPERPWNLIVHFRGYPSEILSPCEGEDSVKWSYMNSLKEATFIITGNSKSVMNMSHAD
QVALWESVMKGNLDGYKNISTRLKLGPFEDDVLVRTASVERQRQQNSDEPESPGSSKPCM
LFCSGTFILSSMLKVHVLTRVQYGRVPVRLYVRNVQEDLEYIEHAVPVSDWENVSYINRP
FETRKAEGRSYITLEHALQTLLPEFFSSKPPGSADGSQHAGAMDAAADSSDATNSSSRSQ
EAEQALASPAEAGSAKRAKVKLVRVQGVELDMDIPFLWVADHLKNPEYYVHICVYVGTRK
Q

Transcript Sequence

Transcript ID

Zm00001d015009_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:72040325:72044623:-1 gene:Zm00001d015009 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:autophagy5 description:Autophagy protein 5
Sequence

ATGGCGGCCACGAGAGGAGAGACTTTGGGACCAAGAATTGGGTATTTGCCCCTCTTGATA
CCTGTTATAAGGGCTCATTTCAGCAATGCACTCCCACCTGGTGTTGACACTGTTTGGTTT
GAATATAAAGGGCTGCCTTTGAAATGGTATGTACCAATTGGTGTTCTTTTTGATCTTCTA
TGTGCAGATCCAGAAAGACCATGGAATCTAATAGTCCATTTTAGGGGATATCCCTCAGAA
ATCTTGTCACCATGCGAGGGTGAAGATAGTGTGAAGTGGAGCTACATGAATTCCCTGAAA
GAGGCCACCTTCATCATTACTGGGAACAGTAAGAGTGTGATGAATATGTCGCATGCTGAT
CAAGTCGCTCTGTGGGAATCTGTAATGAAAGGTAACTTAGATGGGTATAAAAATATCTCC
ACCAGGCTTAAGCTTGGACCATTTGAAGATGATGTGTTAGTACGGACAGCCTCCGTGGAG
CGGCAACGTCAACAAAATTCTGATGAACCTGAATCTCCTGGATCTAGCAAACCGTGTATG
CTCTTTTGCTCTGGGACTTTTATATTGTCATCCATGTTAAAAGTTCATGTGCTTACAAGA
GTTCAATACGGCAGGGTCCCTGTTCGATTATACGTACGCAATGTTCAAGAAGACCTTGAG
TACATAGAACATGCAGTTCCTGTCAGTGACTGGGAAAACGTGTCCTACATAAATCGGCCA
TTTGAGACTCGCAAGGCTGAAGGTAGAAGCTACATCACCCTGGAACATGCGTTGCAAACA
TTGCTTCCGGAGTTCTTCAGCTCAAAGCCCCCAGGCAGCGCTGACGGCTCCCAACACGCA
GGCGCAATGGACGCAGCCGCAGACAGTTCAGATGCCACCAACTCTTCAAGTCGTTCTCAG
GAGGCAGAGCAAGCCCTGGCAAGTCCAGCAGAGGCGGGTTCTGCCAAGAGAGCGAAAGTG
AAGCTGGTGAGGGTGCAAGGTGTTGAGCTCGACATGGACATCCCGTTCCTGTGGGTCGCC
GACCACCTCAAGAACCCCGAATACTACGTCCACATCTGTGTATACGTCGGCACTAGAAAA
CAATAGAGATAAGAGTACATGGGGAAATTGTTAGATACTGCGTTAGGAGTGTGTCCCAGA
AATCATTTTCTTTGTTCTTTGGTTATTACATGTGCTATCCTGTGTGCAGATACAGACGCT
GAAATTTGTAACCCTTTTGGATGCACAGTCATGGAAGGATGGAATTGGATGGTGAACCAT
TTTGTGTGTGTGTGTGTGTGTGTATCCGATCGACGTATTGCAATATATATCCTGCCTGGA
GCATAGCAGAATTCTTTCGTTGTAGAAC