Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d014998_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:5:71503072:71509439:-1 gene:Zm00001d014998 gene_biotype:protein_coding transcript_biotype:protein_coding description:FACT complex subunit SPT16
Sequence	ATGGCTGATAATGGTGATGCCAAAGGGGGATCTGGCGCCTATGCAATTAATATAGAGAAT TTTAGTAAGCGGCTGAAGGTATTCTATGACCATTGGAAGGAGCACAAGTCTGATCTTTGG GGCTCGTCTGATGCTATTGCAATTGCTACCCCACCTCCTTCTGATGATCTCCGTTATTTG AAATCATCAGCCCTGGATATTTGGTTACTTGGATATGAATTTCCAGAAACAATAATTGTT TTCATGCACAAGCAAATACATGTTTTAAGCAGTCAGAAGAAAGGAAATCTTATTGGGACC CTCAAGAAGGCTGCAAACGAGGCTGTTGGTGTTGACATTGTGTTGCATGTGAAAACCAAG AATAGTGATGGTGCTGACTTGATGGATGACATAGTGCATGCTGCTCGTAATCAATCAAAA TCAGATAAGCCAGTTGTTGGACACATAGCCAAAGAGGCACCTGAGGGTAAGCTTCTTGAA ACATGGATAAAAAAATTATCTGGATCAGGCCTACGACTCGTTGATGTAACAAACGGCTTC TCTGAGCTCTTTGCTGTGAAGGACACCACAGAGATCACATGTGTGAAGAAGGCTGCTTAC TTAACTTCATCCGTTCTGAAAAATTTTGTGATTCCTAAGTTGGAGAAGGTTATCGATGAG GAGAAGGAAGTCTCACACTCATCGTTGATGGATGACGCAGAGAAGGCTATTCTGGACCCA CTAAAGGTCAAGGTGAAATTGAAGCCTGATAATGTTGATATATGCTACCCTCCAGTCTTT CAAAGTGGGGGTAAGTTTGATCTAAAGCCTGGTGCGTCTAGCAATGACGAGTACCTGTAT TATGATTCAGCAAGTATTATCATCTGTGCAATTGGTTCCAAATACAGTAGCTATTGCTCA AATGTTGCTCGGACATATCTTATCGACGCTACCCCTACACAGAATAAAGCATATGAGACC CTTAGGAAAGCTCATGAAGCTGCTATTCAACAAGTGAAACCAGGCAATCAGATGAGTGCA GTTTATCAAGCTGCAGTGGCTGTGATTGAGAGGGATGCACCTGAACTTCTTCCTAATCTA ACAAAGTCAGCTGGAACTGGAATAGGCCTTGAATTCCGAGAATCTGGCTTAAATCTGAAT GCCAAGAATGATCGTAGGATAAAAAAGGGAATGGTTTTTAATGTATCCCTTGGTTTGCAT AACATCCAGGCAGAAACAACCAGTGAGAAGACAAAGCAGTTTTCACTATTATTAGCTGAT ACAGTTTTAGTCAATGAAAGAGGACATGAGATCTTAACAGCACCCTGCTCCAAGGCATTC AAAGATGTTGCTTATTCGTTCAACGAAGATGATGATGCTGTTGCTGCTGAGGTTAAGATA AAGTCGAAGACCATAGATGTTATGCCAACCAAGGCAACTCTCAGGTCAGACAACCAGGAG ATGTCGAAGGAAGAGCTCAGGAGACAGCACCAGGCTGAACTTGCTCGCCAGAAGAATGAA GAGACTGCTAGAAGGCTTGCTGGGGTTGGTACTGGATCTGGTGACGGACGTGGTCCTGCG AGGGCTTCAAATGAGCTTGTTGCATATAAGAATGTTAATGATGTACCATTTGTAAGAGAT TTGGTGATCCAAGTAGATCAGAAGAATGAAGCTGTCCTCTTACCTATTTATGGTAGTATG GTTCCTTTCCATGTTTCTACTGTCAAGAGTGTGACAAGTCACCAGGACAACCGCACCTGC ACTATCCGTATCTTCTTCAATGTGCCTGGCATGCCATTCTCAAATGATAGCAAGTTTAAT TCTCAAGGTGCTATCTATCTGAAAGAAATTACATTCCGCTCAAAAGATCCACGGCATAGC AGTGAAGTTGTTCAGCAGATCAAAACATTGAGGAGGCAAGTGGCATCAAGGGAGTCAGAG AGAGCTGAAAGGGCAACTCTTGTTACCCAGGAGAAACTTCAGATTGGAAGCAACAGAATG AAGATGATGAGGCTTTCTGATGTGTGGATACGACCTGCATTTGGTGGTCGTGGGAGGAAG CTCACAGGAAATCTTGAGGCTCATTTCAATGGTTTCAGATATTCTACTTCAAGGTCTGAT GAGCGTGTGGACATCATGTTTGGAAATATAAAGCATGCCTTTTTCCAGCCTGCAGAGAAA GAAATGATTACTCTCCTTCACTTCCATTTGCACAACCATATCATGGTTGGAAACAAGAAG ACAAAGGATGTTCAGTTCTATGTTGAAGTTATGGATGTTGTACAGACGCTTGGGGGCAGT AGAAGATCGGCACTTGATCCTGATGAGATTGAAGAAGAGCAGCGTGAGAGGGATAGGAAG AACAGAATAAACATGGATTTCCAGAACTTTGTGAACAAGGTTAACGACCACTGGTCGCAA CCACAGTTCAAGGGGCTTGACCTGGAGTTTGATGTCCCCCTTAGAGAGCTTGGGTTCCAT GGTGTCCCATATAAAGCTTCTGCTTTCATTATTCCAACTTCTACATGTTTGGTTGAGCTG ATTGAGACCCCCTTCCTTGTGGTGAGCCTGAGCGAGATAGAGATTGTTAACCTGGAGAGG GTGGGCTTTGGGACAAAGAACTTCGACATGGCTATCGTGTTCAAGGATTTCAAGAAAGAC GTTCTCCGCATTGACTCCATCCCTTCAGCATCGCTTGACGCGATAAAGGAATGGCTGGAC ACAACTGACCTCAAGTACTATGAGAGCAGGCTGAATCTGAACTGGCGCCCTATCCTGAAA ACTATAATCGATGATCCTCAGAAGTTCATTGACGATGGCGGCTGGGAGTTCCTGAACATG GAGGCGAGTGACTCAGAGACTGAGGACACAGAGGAATCAGACCAAGGCTATGTGCCTTCA GACGCTGAGCCCGAATCCGAGTCAGAAGATGATGACTCTGACAGTGAGTCCTTGGTGGAA TCTGATGATGACGATGAGGAGTCAGACGAGGACTCAGAGGAGGAGAAGGGCAAGACCTGG GAGGAGCTGGAGCGTGAGGCAAGCAACGCGGACCGTGAGCACGGTGCGGAGTCGGACAGC GAGGAGGAGAGGAGGCGCCGCAAGGCAAAGACCTTCGGCAAGTCGCGTGCGCCGGAGCGC AGCAGCTTCAAGGGAGCGCCGCCCTCCAAGAAGCCAAAGTTCAGGCCAGAGCCCGTCGGG ATGGAAGGCGGCGGCTCCGGTGGGCGGGCCGCTGCCGTCGTCCCCGCGCGTATGACCACC TTGTCCCGGCACTACTTCGGCGGCAGCGCGTCTGAGCGCCACCACGACCTCCGCGTGGAC ATCGTCGAGAACATCCAGGAGGACTACGGCATGTTTGTCTGGCCATGCAGTGTCATCCTT GCCGAGTATGTGTGGCAGCACAGATCACGGTTCTCTGCTTCCAGAGTTGTTGAGCTTGGT GCTGGGACCTCACTGCCAGGATTAGTAGCTGCAAAGGTTGGGGCAGATGTAACACTAACA GACATTGCGCAGAATGCAGAAGTACTGAACAACATCAGAAGCATATGTGCTCTCAATGAC GCCAATTGTACTGTTTCGGGACTTACATGGGGAGACTGGGATGAATCGGTATTTGATTTA CATCCTGACATTATTCTTGGAGCTGATGTACTTTACGACTCAGCAAATTTCGATGATCTG TTCGCGACGGTGACCTTTCTTCTCGAAAATTCTTCTGGGGCGGTTTTCATAACCACATAC CACAACCGCAGTGGTCATCATCTGATTGAGTTTTTGATGGTCAAGTGGGGTTTGAAGTGT TTGAAACTGCTGGATGGTTTCTCCTTCCTACCGCCATGTAAGGCTGCTTTACTTCAGGGG AATATTCAGCTTGTCGAAATTGCGCTTGACAAGGAAAAACATAAATGA

Peptide Sequence

PEP ID	Zm00001d014998_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:5:71503072:71509439:-1 gene:Zm00001d014998 transcript:Zm00001d014998_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:FACT complex subunit SPT16
Sequence	MADNGDAKGGSGAYAINIENFSKRLKVFYDHWKEHKSDLWGSSDAIAIATPPPSDDLRYL KSSALDIWLLGYEFPETIIVFMHKQIHVLSSQKKGNLIGTLKKAANEAVGVDIVLHVKTK NSDGADLMDDIVHAARNQSKSDKPVVGHIAKEAPEGKLLETWIKKLSGSGLRLVDVTNGF SELFAVKDTTEITCVKKAAYLTSSVLKNFVIPKLEKVIDEEKEVSHSSLMDDAEKAILDP LKVKVKLKPDNVDICYPPVFQSGGKFDLKPGASSNDEYLYYDSASIIICAIGSKYSSYCS NVARTYLIDATPTQNKAYETLRKAHEAAIQQVKPGNQMSAVYQAAVAVIERDAPELLPNL TKSAGTGIGLEFRESGLNLNAKNDRRIKKGMVFNVSLGLHNIQAETTSEKTKQFSLLLAD TVLVNERGHEILTAPCSKAFKDVAYSFNEDDDAVAAEVKIKSKTIDVMPTKATLRSDNQE MSKEELRRQHQAELARQKNEETARRLAGVGTGSGDGRGPARASNELVAYKNVNDVPFVRD LVIQVDQKNEAVLLPIYGSMVPFHVSTVKSVTSHQDNRTCTIRIFFNVPGMPFSNDSKFN SQGAIYLKEITFRSKDPRHSSEVVQQIKTLRRQVASRESERAERATLVTQEKLQIGSNRM KMMRLSDVWIRPAFGGRGRKLTGNLEAHFNGFRYSTSRSDERVDIMFGNIKHAFFQPAEK EMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGSRRSALDPDEIEEEQRERDRK NRINMDFQNFVNKVNDHWSQPQFKGLDLEFDVPLRELGFHGVPYKASAFIIPTSTCLVEL IETPFLVVSLSEIEIVNLERVGFGTKNFDMAIVFKDFKKDVLRIDSIPSASLDAIKEWLD TTDLKYYESRLNLNWRPILKTIIDDPQKFIDDGGWEFLNMEASDSETEDTEESDQGYVPS DAEPESESEDDDSDSESLVESDDDDEESDEDSEEEKGKTWEELEREASNADREHGAESDS EEERRRRKAKTFGKSRAPERSSFKGAPPSKKPKFRPEPVGMEGGGSGGRAAAVVPARMTT LSRHYFGGSASERHHDLRVDIVENIQEDYGMFVWPCSVILAEYVWQHRSRFSASRVVELG AGTSLPGLVAAKVGADVTLTDIAQNAEVLNNIRSICALNDANCTVSGLTWGDWDESVFDL HPDIILGADVLYDSANFDDLFATVTFLLENSSGAVFITTYHNRSGHHLIEFLMVKWGLKC LKLLDGFSFLPPCKAALLQGNIQLVEIALDKEKHK

Transcript Sequence

Transcript ID	Zm00001d014998_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:5:71503072:71509439:-1 gene:Zm00001d014998 gene_biotype:protein_coding transcript_biotype:protein_coding description:FACT complex subunit SPT16
Sequence	ATGGCTGATAATGGTGATGCCAAAGGGGGATCTGGCGCCTATGCAATTAATATAGAGAAT TTTAGTAAGCGGCTGAAGGTATTCTATGACCATTGGAAGGAGCACAAGTCTGATCTTTGG GGCTCGTCTGATGCTATTGCAATTGCTACCCCACCTCCTTCTGATGATCTCCGTTATTTG AAATCATCAGCCCTGGATATTTGGTTACTTGGATATGAATTTCCAGAAACAATAATTGTT TTCATGCACAAGCAAATACATGTTTTAAGCAGTCAGAAGAAAGGAAATCTTATTGGGACC CTCAAGAAGGCTGCAAACGAGGCTGTTGGTGTTGACATTGTGTTGCATGTGAAAACCAAG AATAGTGATGGTGCTGACTTGATGGATGACATAGTGCATGCTGCTCGTAATCAATCAAAA TCAGATAAGCCAGTTGTTGGACACATAGCCAAAGAGGCACCTGAGGGTAAGCTTCTTGAA ACATGGATAAAAAAATTATCTGGATCAGGCCTACGACTCGTTGATGTAACAAACGGCTTC TCTGAGCTCTTTGCTGTGAAGGACACCACAGAGATCACATGTGTGAAGAAGGCTGCTTAC TTAACTTCATCCGTTCTGAAAAATTTTGTGATTCCTAAGTTGGAGAAGGTTATCGATGAG GAGAAGGAAGTCTCACACTCATCGTTGATGGATGACGCAGAGAAGGCTATTCTGGACCCA CTAAAGGTCAAGGTGAAATTGAAGCCTGATAATGTTGATATATGCTACCCTCCAGTCTTT CAAAGTGGGGGTAAGTTTGATCTAAAGCCTGGTGCGTCTAGCAATGACGAGTACCTGTAT TATGATTCAGCAAGTATTATCATCTGTGCAATTGGTTCCAAATACAGTAGCTATTGCTCA AATGTTGCTCGGACATATCTTATCGACGCTACCCCTACACAGAATAAAGCATATGAGACC CTTAGGAAAGCTCATGAAGCTGCTATTCAACAAGTGAAACCAGGCAATCAGATGAGTGCA GTTTATCAAGCTGCAGTGGCTGTGATTGAGAGGGATGCACCTGAACTTCTTCCTAATCTA ACAAAGTCAGCTGGAACTGGAATAGGCCTTGAATTCCGAGAATCTGGCTTAAATCTGAAT GCCAAGAATGATCGTAGGATAAAAAAGGGAATGGTTTTTAATGTATCCCTTGGTTTGCAT AACATCCAGGCAGAAACAACCAGTGAGAAGACAAAGCAGTTTTCACTATTATTAGCTGAT ACAGTTTTAGTCAATGAAAGAGGACATGAGATCTTAACAGCACCCTGCTCCAAGGCATTC AAAGATGTTGCTTATTCGTTCAACGAAGATGATGATGCTGTTGCTGCTGAGGTTAAGATA AAGTCGAAGACCATAGATGTTATGCCAACCAAGGCAACTCTCAGGTCAGACAACCAGGAG ATGTCGAAGGAAGAGCTCAGGAGACAGCACCAGGCTGAACTTGCTCGCCAGAAGAATGAA GAGACTGCTAGAAGGCTTGCTGGGGTTGGTACTGGATCTGGTGACGGACGTGGTCCTGCG AGGGCTTCAAATGAGCTTGTTGCATATAAGAATGTTAATGATGTACCATTTGTAAGAGAT TTGGTGATCCAAGTAGATCAGAAGAATGAAGCTGTCCTCTTACCTATTTATGGTAGTATG GTTCCTTTCCATGTTTCTACTGTCAAGAGTGTGACAAGTCACCAGGACAACCGCACCTGC ACTATCCGTATCTTCTTCAATGTGCCTGGCATGCCATTCTCAAATGATAGCAAGTTTAAT TCTCAAGGTGCTATCTATCTGAAAGAAATTACATTCCGCTCAAAAGATCCACGGCATAGC AGTGAAGTTGTTCAGCAGATCAAAACATTGAGGAGGCAAGTGGCATCAAGGGAGTCAGAG AGAGCTGAAAGGGCAACTCTTGTTACCCAGGAGAAACTTCAGATTGGAAGCAACAGAATG AAGATGATGAGGCTTTCTGATGTGTGGATACGACCTGCATTTGGTGGTCGTGGGAGGAAG CTCACAGGAAATCTTGAGGCTCATTTCAATGGTTTCAGATATTCTACTTCAAGGTCTGAT GAGCGTGTGGACATCATGTTTGGAAATATAAAGCATGCCTTTTTCCAGCCTGCAGAGAAA GAAATGATTACTCTCCTTCACTTCCATTTGCACAACCATATCATGGTTGGAAACAAGAAG ACAAAGGATGTTCAGTTCTATGTTGAAGTTATGGATGTTGTACAGACGCTTGGGGGCAGT AGAAGATCGGCACTTGATCCTGATGAGATTGAAGAAGAGCAGCGTGAGAGGGATAGGAAG AACAGAATAAACATGGATTTCCAGAACTTTGTGAACAAGGTTAACGACCACTGGTCGCAA CCACAGTTCAAGGGGCTTGACCTGGAGTTTGATGTCCCCCTTAGAGAGCTTGGGTTCCAT GGTGTCCCATATAAAGCTTCTGCTTTCATTATTCCAACTTCTACATGTTTGGTTGAGCTG ATTGAGACCCCCTTCCTTGTGGTGAGCCTGAGCGAGATAGAGATTGTTAACCTGGAGAGG GTGGGCTTTGGGACAAAGAACTTCGACATGGCTATCGTGTTCAAGGATTTCAAGAAAGAC GTTCTCCGCATTGACTCCATCCCTTCAGCATCGCTTGACGCGATAAAGGAATGGCTGGAC ACAACTGACCTCAAGTACTATGAGAGCAGGCTGAATCTGAACTGGCGCCCTATCCTGAAA ACTATAATCGATGATCCTCAGAAGTTCATTGACGATGGCGGCTGGGAGTTCCTGAACATG GAGGCGAGTGACTCAGAGACTGAGGACACAGAGGAATCAGACCAAGGCTATGTGCCTTCA GACGCTGAGCCCGAATCCGAGTCAGAAGATGATGACTCTGACAGTGAGTCCTTGGTGGAA TCTGATGATGACGATGAGGAGTCAGACGAGGACTCAGAGGAGGAGAAGGGCAAGACCTGG GAGGAGCTGGAGCGTGAGGCAAGCAACGCGGACCGTGAGCACGGTGCGGAGTCGGACAGC GAGGAGGAGAGGAGGCGCCGCAAGGCAAAGACCTTCGGCAAGTCGCGTGCGCCGGAGCGC AGCAGCTTCAAGGGAGCGCCGCCCTCCAAGAAGCCAAAGTTCAGGCCAGAGCCCGTCGGG ATGGAAGGCGGCGGCTCCGGTGGGCGGGCCGCTGCCGTCGTCCCCGCGCGTATGACCACC TTGTCCCGGCACTACTTCGGCGGCAGCGCGTCTGAGCGCCACCACGACCTCCGCGTGGAC ATCGTCGAGAACATCCAGGAGGACTACGGCATGTTTGTCTGGCCATGCAGTGTCATCCTT GCCGAGTATGTGTGGCAGCACAGATCACGGTTCTCTGCTTCCAGAGTTGTTGAGCTTGGT GCTGGGACCTCACTGCCAGGATTAGTAGCTGCAAAGGTTGGGGCAGATGTAACACTAACA GACATTGCGCAGAATGCAGAAGTACTGAACAACATCAGAAGCATATGTGCTCTCAATGAC GCCAATTGTACTGTTTCGGGACTTACATGGGGAGACTGGGATGAATCGGTATTTGATTTA CATCCTGACATTATTCTTGGAGCTGATGTACTTTACGACTCAGCAAATTTCGATGATCTG TTCGCGACGGTGACCTTTCTTCTCGAAAATTCTTCTGGGGCGGTTTTCATAACCACATAC CACAACCGCAGTGGTCATCATCTGATTGAGTTTTTGATGGTCAAGTGGGGTTTGAAGTGT TTGAAACTGCTGGATGGTTTCTCCTTCCTACCGCCATGTAAGGCTGCTTTACTTCAGGGG AATATTCAGCTTGTCGAAATTGCGCTTGACAAGGAAAAACATAAATGACCCTGAGTTTGA TTACAGGAGTTGACGAAAAGCACAGAGAAATGGAATGCCATATTTGGTCCTCTGCATACA TGTACGAGCAACTCCATGTCAAGCCATCCGTTTGGACTGTCATCATAAGGATGTTCTTTT AATTAAAAGAAACTCATGGGGAGCATCGTTGTTCGAATAGCCTATGCATGCAAGAAAAAA CAGAAAATGTTAGCAGATATGTACTCTTTTGTGACATCTGTACAGAACATGTTGGTTTCC TGAAAAAAGATGCAGAATGTCCTTTTCTTGATGTATTCGAAAAAATGAGCTAAATGCATA ACTTTACACAA