Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d014967_T039
CDS Infomation

cds chromosome:B73_RefGen_v4:5:70448045:70453048:-1 gene:Zm00001d014967 gene_biotype:protein_coding transcript_biotype:protein_coding description:Helicase protein MOM1
Sequence

ATGGCAGTTCAGGATCTGCAAACTGAGATGCAAACAACATGCCCAACATTGGGTGCTCAA
CATCAGAAGGTGTGCCCTGATGATTCTAGTAAAATGAACCATGAACCAGATACAACAACT
GGAATGTTGCAGGAAGGGACAACTTCTGACCATTTAGGTGATTCCAGTAAGGTGAACGTT
GAACCAGATATAACAACTGGAATGTCTCAGGAAGGGAAAACTTCTGACCATTTAGATGAT
TCCAGCACTGGAGTTAAAGAAAAAAATATTGACACTGTCATTGCAGATCCATTGAATTCA
GAAAATCAATCTTATATTGCTATGCCAGAAGCTTGGGTAGCTGAAATTCAGAGTGATCAG
TCAAGTATGCCTGCACAACATAGTACAAGTCTTCCTACTCAGCGGAAGTTACCAGTTTTG
GGACATCCACCAGAAGAAGCAAATCCATCAAGTAATTTGGACACAGAGGCTGCCCAGAAG
CCAGATATTCAACCATCAAGCTCAACGTTGGATGCTGACAGCTCTGAAACAAGGCATCAG
CCAGAAACTACAACAGTTCTGTCACAGGTAGGCAGTAAAAATCACGATGTTGGCACTTTT
CACGCACAAAAAGCCCAATCAGACTCACCAATTTTGGCTGCCCCACAAAGCACAGCTATG
TTGTCACTTCCTTTGGAGGCTGGAACTCCTGCTAATGTATCAAGTACGTCTTCCCTGCAA
AGTAACGGTGTATCTTCAAGGCACACACCTGCTGTTTCAGAATCATCAGGTATGTTGGGC
ACTCAGCCAGAACAGGATTTGCATCATGACCTGGGGCCATCCATGTCATTGTTGGGTGTT
CCACTTCAAAGAATGCTCCCAGATGACAGGAGCCAAACAGTCTGTCAGCCAGATAGAGGA
ACTGATTTGTCAGGGAAAGGCGAAACTGAATATCTAGCTTGTACCACCAGCGATCTGTCC
ACCCTTCCACTTTCTGGTGAAGCTGAAACTGAGAATGGTCAAGCAAGTATGCCTGCACAG
GAAATCACAAGTCCCCATGCCCAACATAGTTTAGCTTTAGCAACTTCACAGCATCCAGTT
GGTGATTTGCAGCCACCGACGTTGATTCTGTCTGAGGAAACAGAAAGGGCTGGTCTCTTG
TGCACCTCAGCATCTCAGGATTTGCAACTGTCAATGATAACACAGGAGGATGTTCCACTT
GAAAGAACTGATCTGTCGGGCATGCCTGTGACACAAAGTACAACTGTTCTGCAGAGTGTG
GAACCTTCATGTGATCCACATGCAGAAGAGGCAGGTACTTGGGGTATGTTGTCAGCTCCA
GATTTGCAGTCCAGAATGCAGTCATCATCTCAATTGCAGGATCAAATTGCGGAAGCAGAA
GGAGCAGGCATTTTTGGCACCATTCCAGCTCAGAACTTGCAGCCTGAAACGTGGTCATCA
ACCTCAGCTCAGCATATCTCACCATTGAGGACACACCCTGATGAGAGAATTCAAATAGGT
CTTCAGCCAAATACGACACCGGTTCCTGAGCTGCTAGGCCAACTATCTACATTGACACCT
GCAGGTCTATTGTCTAGTAACGAACCACTAATGAATGAGCTTGAAAAACTGAAATACTGC
AACGCCGTGCTCTGTAAAAACCATGAACAGAAGAAATCACAACTTCAAACAGAGTGCAAC
CAAGAAATAGAGAAGGTAAAGGAGAAGTATGAGTTGTTACGTCAAGAGGAAGATTCTGTG
TATCATCGATTGACCACAGACCTTAACCGTATCTACACGAAAGTTCTTGTAAATCAATCA
CTAGCTGAATTCTTTAAAGCATCTCTAGTTCAAGAGAGATCTGCAAGGCCCACAATTTGG
CAGGCACCCCAGTCCTCTCAGCATGCTCCGTGTGGGACAACAGCAGCTCAAGCCACACTA
TTACCGGTTGCCTCATCTTTAGCCACTCGACCAACAGTTTTGATGTCATATCATACAACA
GGACCTCACCTCCCACCTTCACAGGTGGCTCGGCCACCGGCTTCTGGGGCTATCCAACTG
CAACCTGTTTTACCTGGAAACCATTCCAGAGCAGCACCATCACCTGTTGGTTCAATGCAT
CCACGACATGGAATCTACAGAGCTGTTGGAGCACAATCACGTGGGCCTGCTCCTCATCTC
CAGCAACTCAGGATGCCAGCACCGTTTGCAATGGTTCACAGAGATGGACAGCATCCACCC
AGTATCATGAATCCCGGGGTTATACCATCGAGACAGTCTGTCCATGGTAATTTTGAAAGC
TCTGCTTCTGGCAATGCACTGGCAGGTATCTCATTTGCATCCATGGCACCAAGTTCAGGT
CACCAGGCGATGTCGTCCACATCAGACTCACATCCAGTTTTCCCAGCATCCTCGCTTCTA
CCAGGTTCAGGTCCAGGGTCGATGACAAACTTTGTGCGGTCAAGTACCAGAATCCCTGTT
GTCATGGCGAGCGAACAAGCACCACGCCTGAATCCATATGTTCACCACATCGGAGGTGGT
CCACTGAACGCTGCACCAGCAGGAATTCAGCAAGCTAGAGCTCATATAGGACGCACTCCT
CAGGCTGCCTCAGATCAGAGTCAGGACGTGCTGCATCGCCTACTACTACAGTTGCCCGAA
GTCATGGCGCCAAGCTTAGCTCAGCCAACCGCATCAAGCTCACACCCGGCTCCCATGGCA
GCCCGGCAGCAAGCAGGGCTACTGAATCCAGCTCCTGACAACGTGGCATGTCCACTGAAC
GCAGTGGCTGGAGTTGGGCGCCCCGGAGCCCGCATAGGCAGCCAGTCGTACCAGGTATCG
GCTTCGTTGCTCGAGTGGGAGGCGACGCTCAGGGTTGGCCTGATTCGTGGACACCAAGGC
ACGTACCCCTTGGGACAGGGATGTTCTGACCTGGCTGGAGGACCCCCCGGCACATCCGCT
GCCCAGGGATGCGGCTCCGGCGCCAGCAGAGAGGTGGTGTGCCTATCTGATGACGAGGAG
TAG

Peptide Sequence

PEP ID

Zm00001d014967_P039
PEP Infomation

pep chromosome:B73_RefGen_v4:5:70448045:70453048:-1 gene:Zm00001d014967 transcript:Zm00001d014967_T039 gene_biotype:protein_coding transcript_biotype:protein_coding description:Helicase protein MOM1
Sequence

MAVQDLQTEMQTTCPTLGAQHQKVCPDDSSKMNHEPDTTTGMLQEGTTSDHLGDSSKVNV
EPDITTGMSQEGKTSDHLDDSSTGVKEKNIDTVIADPLNSENQSYIAMPEAWVAEIQSDQ
SSMPAQHSTSLPTQRKLPVLGHPPEEANPSSNLDTEAAQKPDIQPSSSTLDADSSETRHQ
PETTTVLSQVGSKNHDVGTFHAQKAQSDSPILAAPQSTAMLSLPLEAGTPANVSSTSSLQ
SNGVSSRHTPAVSESSGMLGTQPEQDLHHDLGPSMSLLGVPLQRMLPDDRSQTVCQPDRG
TDLSGKGETEYLACTTSDLSTLPLSGEAETENGQASMPAQEITSPHAQHSLALATSQHPV
GDLQPPTLILSEETERAGLLCTSASQDLQLSMITQEDVPLERTDLSGMPVTQSTTVLQSV
EPSCDPHAEEAGTWGMLSAPDLQSRMQSSSQLQDQIAEAEGAGIFGTIPAQNLQPETWSS
TSAQHISPLRTHPDERIQIGLQPNTTPVPELLGQLSTLTPAGLLSSNEPLMNELEKLKYC
NAVLCKNHEQKKSQLQTECNQEIEKVKEKYELLRQEEDSVYHRLTTDLNRIYTKVLVNQS
LAEFFKASLVQERSARPTIWQAPQSSQHAPCGTTAAQATLLPVASSLATRPTVLMSYHTT
GPHLPPSQVARPPASGAIQLQPVLPGNHSRAAPSPVGSMHPRHGIYRAVGAQSRGPAPHL
QQLRMPAPFAMVHRDGQHPPSIMNPGVIPSRQSVHGNFESSASGNALAGISFASMAPSSG
HQAMSSTSDSHPVFPASSLLPGSGPGSMTNFVRSSTRIPVVMASEQAPRLNPYVHHIGGG
PLNAAPAGIQQARAHIGRTPQAASDQSQDVLHRLLLQLPEVMAPSLAQPTASSSHPAPMA
ARQQAGLLNPAPDNVACPLNAVAGVGRPGARIGSQSYQVSASLLEWEATLRVGLIRGHQG
TYPLGQGCSDLAGGPPGTSAAQGCGSGASREVVCLSDDEE

Transcript Sequence

Transcript ID

Zm00001d014967_T039
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:70448045:70453048:-1 gene:Zm00001d014967 gene_biotype:protein_coding transcript_biotype:protein_coding description:Helicase protein MOM1
Sequence

CAATTTCCTGATCATTGCGTTACTCTACCAGATTCCAATTCTGTCATTGAGGAATTTATC
CATTTTAAGAAACAAAATGATGATAGTCATGTTGACCAAAAAATGGCTTTGGATGGTGAC
CAGCTTATGGATGACAGACCGATGGAAATTACTATTTTACGCAGTTTGTTTTCACCAGAG
GCTTGTTCTACACTTGCAGTGAGAAATGAGCCTACAGAAGCTCATTTGAGGTCTGGTGGG
AGAGCATCATCAGAATATGTAGATCTTCCAGATAACAATAATCACTGTATTTCTGTTGGA
ATTGACTACCAAGGAGGTTGTTCTGCTAGTTCTATTCCTACAAGTCATGGTTCAATCAAT
CAGGAAGTGCAACTTCTCTTGTGGTAATCAATGCAGAAAATGATAGTACTGTTGCAGCAG
ATCCAGACCACTTGGAATCACATATTTTGGCTTCTGTCACGACCTTGCAGCATCCAACAT
CAGAAGAACCGTCTGATACATTACATGCAATGGCAGTTCAGGATCTGCAAACTGAGATGC
AAACAACATGCCCAACATTGGGTGCTCAACATCAGAAGGTGTGCCCTGATGATTCTAGTA
AAATGAACCATGAACCAGATACAACAACTGGAATGTTGCAGGAAGGGACAACTTCTGACC
ATTTAGGTGATTCCAGTAAGGTGAACGTTGAACCAGATATAACAACTGGAATGTCTCAGG
AAGGGAAAACTTCTGACCATTTAGATGATTCCAGCACTGGAGTTAAAGAAAAAAATATTG
ACACTGTCATTGCAGATCCATTGAATTCAGAAAATCAATCTTATATTGCTATGCCAGAAG
CTTGGGTAGCTGAAATTCAGAGTGATCAGTCAAGTATGCCTGCACAACATAGTACAAGTC
TTCCTACTCAGCGGAAGTTACCAGTTTTGGGACATCCACCAGAAGAAGCAAATCCATCAA
GTAATTTGGACACAGAGGCTGCCCAGAAGCCAGATATTCAACCATCAAGCTCAACGTTGG
ATGCTGACAGCTCTGAAACAAGGCATCAGCCAGAAACTACAACAGTTCTGTCACAGGTAG
GCAGTAAAAATCACGATGTTGGCACTTTTCACGCACAAAAAGCCCAATCAGACTCACCAA
TTTTGGCTGCCCCACAAAGCACAGCTATGTTGTCACTTCCTTTGGAGGCTGGAACTCCTG
CTAATGTATCAAGTACGTCTTCCCTGCAAAGTAACGGTGTATCTTCAAGGCACACACCTG
CTGTTTCAGAATCATCAGGTATGTTGGGCACTCAGCCAGAACAGGATTTGCATCATGACC
TGGGGCCATCCATGTCATTGTTGGGTGTTCCACTTCAAAGAATGCTCCCAGATGACAGGA
GCCAAACAGTCTGTCAGCCAGATAGAGGAACTGATTTGTCAGGGAAAGGCGAAACTGAAT
ATCTAGCTTGTACCACCAGCGATCTGTCCACCCTTCCACTTTCTGGTGAAGCTGAAACTG
AGAATGGTCAAGCAAGTATGCCTGCACAGGAAATCACAAGTCCCCATGCCCAACATAGTT
TAGCTTTAGCAACTTCACAGCATCCAGTTGGTGATTTGCAGCCACCGACGTTGATTCTGT
CTGAGGAAACAGAAAGGGCTGGTCTCTTGTGCACCTCAGCATCTCAGGATTTGCAACTGT
CAATGATAACACAGGAGGATGTTCCACTTGAAAGAACTGATCTGTCGGGCATGCCTGTGA
CACAAAGTACAACTGTTCTGCAGAGTGTGGAACCTTCATGTGATCCACATGCAGAAGAGG
CAGGTACTTGGGGTATGTTGTCAGCTCCAGATTTGCAGTCCAGAATGCAGTCATCATCTC
AATTGCAGGATCAAATTGCGGAAGCAGAAGGAGCAGGCATTTTTGGCACCATTCCAGCTC
AGAACTTGCAGCCTGAAACGTGGTCATCAACCTCAGCTCAGCATATCTCACCATTGAGGA
CACACCCTGATGAGAGAATTCAAATAGGTCTTCAGCCAAATACGACACCGGTTCCTGAGC
TGCTAGGCCAACTATCTACATTGACACCTGCAGGTCTATTGTCTAGTAACGAACCACTAA
TGAATGAGCTTGAAAAACTGAAATACTGCAACGCCGTGCTCTGTAAAAACCATGAACAGA
AGAAATCACAACTTCAAACAGAGTGCAACCAAGAAATAGAGAAGGTAAAGGAGAAGTATG
AGTTGTTACGTCAAGAGGAAGATTCTGTGTATCATCGATTGACCACAGACCTTAACCGTA
TCTACACGAAAGTTCTTGTAAATCAATCACTAGCTGAATTCTTTAAAGCATCTCTAGTTC
AAGAGAGATCTGCAAGGCCCACAATTTGGCAGGCACCCCAGTCCTCTCAGCATGCTCCGT
GTGGGACAACAGCAGCTCAAGCCACACTATTACCGGTTGCCTCATCTTTAGCCACTCGAC
CAACAGTTTTGATGTCATATCATACAACAGGACCTCACCTCCCACCTTCACAGGTGGCTC
GGCCACCGGCTTCTGGGGCTATCCAACTGCAACCTGTTTTACCTGGAAACCATTCCAGAG
CAGCACCATCACCTGTTGGTTCAATGCATCCACGACATGGAATCTACAGAGCTGTTGGAG
CACAATCACGTGGGCCTGCTCCTCATCTCCAGCAACTCAGGATGCCAGCACCGTTTGCAA
TGGTTCACAGAGATGGACAGCATCCACCCAGTATCATGAATCCCGGGGTTATACCATCGA
GACAGTCTGTCCATGGTAATTTTGAAAGCTCTGCTTCTGGCAATGCACTGGCAGGTATCT
CATTTGCATCCATGGCACCAAGTTCAGGTCACCAGGCGATGTCGTCCACATCAGACTCAC
ATCCAGTTTTCCCAGCATCCTCGCTTCTACCAGGTTCAGGTCCAGGGTCGATGACAAACT
TTGTGCGGTCAAGTACCAGAATCCCTGTTGTCATGGCGAGCGAACAAGCACCACGCCTGA
ATCCATATGTTCACCACATCGGAGGTGGTCCACTGAACGCTGCACCAGCAGGAATTCAGC
AAGCTAGAGCTCATATAGGACGCACTCCTCAGGCTGCCTCAGATCAGAGTCAGGACGTGC
TGCATCGCCTACTACTACAGTTGCCCGAAGTCATGGCGCCAAGCTTAGCTCAGCCAACCG
CATCAAGCTCACACCCGGCTCCCATGGCAGCCCGGCAGCAAGCAGGGCTACTGAATCCAG
CTCCTGACAACGTGGCATGTCCACTGAACGCAGTGGCTGGAGTTGGGCGCCCCGGAGCCC
GCATAGGCAGCCAGTCGTACCAGGTATCGGCTTCGTTGCTCGAGTGGGAGGCGACGCTCA
GGGTTGGCCTGATTCGTGGACACCAAGGCACGTACCCCTTGGGACAGGGATGTTCTGACC
TGGCTGGAGGACCCCCCGGCACATCCGCTGCCCAGGGATGCGGCTCCGGCGCCAGCAGAG
AGGTGGTGTGCCTATCTGATGACGAGGAGTAGCATAGCGTAGAGAGTAGTAGTTTTTTTT
TTGGGCTGGGCTGGTCTGTGCAACGTAGATGTGCATGGGTTGGATAGGCAACAGTAGAGC
GGCACGATATCGTCGCCCCCTTTTAGCAGCAGCGGCATCCTTGGAAGCAGGAGATGTCTG
GCTCTGATGAGGGTAGTATGTCGTATTTTTGGGGGGTGGGGGACTGGTGGCGTGGCGTGG
CGGCAGCAGCATATTAGTGAATAGTGATAGCATATGAACCCTAATTCTGATATATAGTCT
TGTCGTT