Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d014782_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:5:62917160:62919846:-1 gene:Zm00001d014782 gene_biotype:protein_coding transcript_biotype:protein_coding description:Endoglucanase 2
Sequence

ATGGCGCGGAGGTGCTGCGGCTGCAGCGTGCGGTGCTGTTGCTGCCTCCTGGTGCTGACG
CTGCTCGCGCTCGCGGTCACGGCCGCCGTCGTGTTCGCCCGCTACAAGGACGGCGGCAAC
ATCTTCCCCATCCCCGGCTTGCCGGACCCCAAGTATGCCGAGGCGCTCGCCGTGGCGCTC
CGCTTCTTCCAGGTCCAAAAATCCGGGAAGCTGGTGAACAACACGATCCCGTGGCGAGGT
GACTCGGCGCTGCGCGACGGCGAGGATGCCAAGCTGGACCTGTCCAGGGGCATGTACGAC
GCGGGCGACCACGTGAAGTTCGGGTTCACGATGGCGTTCACGGGCACCATGCTGTCGTGG
TCCGTCCTCGAGTACGGCGACGCCATGAGCGACGCCCAGCAGCGCGACGCCGCCATGGAC
GCGCTGGGCTGGATCATGGAGTTCCTCGTCAACGCGCACCCCTCTGACGACGTGCTCTAC
ATCCAGGTGGGCGACCCGAAATCGGACCACAAGTGCTGGGAGCGGCCGGAGACGATGTCG
GAGAAGAGGCCGCTGACGAAGATCACCGCGAAATCCCCCGGCAGCGACGTGGCCGCGGAG
ACGGCGGCGGCCATGGCCGCGGCGTCGCTGGTGTACAAGCCCGGCAACGCGACGTACGCG
TCGTCGCTCCTGGACCACGCCGAGCGGCTGTTCAAGTTCGCCGATGCGCACCGGGGCTCC
TACACGCGCACGTTCCCGGAGCTCAGCGCCTACTACAACTCCACGACGTACCAGGACGAG
CTCCTGTGGGCGGCCGCCTGGCTGTACCACGCCACCGGCAACCACAGCTACCTGAGCTAC
GCCACCGGCAGGAACGCCGACGAGTTCGCCGACCTGGGCAACCCTAGGTACTTCAGCTGG
GATGACAAACGCGCCGGCACCGAGGTTCTCTTGTCCAGGGTGATGTTCTTCGCCGGAGAT
GGATCTGATGCCGGACAAGACGAGGTCCTTGGGTCGTATAAGGACACCGCCGACGCCGTC
ATGTGCATCCTCCTACCGGAGTCGGACACTGCGGCTTTCAGAACAGAAGGGGGGTTACTG
TACGTGGCGGAGTGGAACTCGCTGCAGCACCCGGTGGCGTCAGCGTTCCTCGCCAACGTC
TACAGCAACTACATGGCGACGTCGGGGAAGTCGGAGCTGACCTGCAGCGGCAAGAGCTTC
ACGGCGCTGGACCTCCGCAGGTTCGCCAAGTCCCAGGCGGACTACGTCCTCGGCGACAAC
CCCATGAAGCTGAGCTACCTCGTCGGCTTCGGGGACAGCTACCCGCAGCGGGTGCACCAC
CGCGGCGCGTCCATCCCCGCCGGCGTCGACACCGGCTGCGACGGCCAGGAGTGGCTCAAG
TCGCCTGAGCCCAACCCGAATGTCGCCACGGGCGCGCTGGTCGGCGGGCCGTTCAAGAAC
GACTCGTTCGTCGACGACAGGGAGAACGTGCAGCAGAACGAGCCGACCACGTACAACAGC
GCGCTCGTCGTCGGCTTGCTCTCCGGCCTCCTCTCAACTGCCCCCGTCGCCAAGTCCCTC
TCGTGA

Peptide Sequence

PEP ID

Zm00001d014782_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:5:62917160:62919846:-1 gene:Zm00001d014782 transcript:Zm00001d014782_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Endoglucanase 2
Sequence

MARRCCGCSVRCCCCLLVLTLLALAVTAAVVFARYKDGGNIFPIPGLPDPKYAEALAVAL
RFFQVQKSGKLVNNTIPWRGDSALRDGEDAKLDLSRGMYDAGDHVKFGFTMAFTGTMLSW
SVLEYGDAMSDAQQRDAAMDALGWIMEFLVNAHPSDDVLYIQVGDPKSDHKCWERPETMS
EKRPLTKITAKSPGSDVAAETAAAMAAASLVYKPGNATYASSLLDHAERLFKFADAHRGS
YTRTFPELSAYYNSTTYQDELLWAAAWLYHATGNHSYLSYATGRNADEFADLGNPRYFSW
DDKRAGTEVLLSRVMFFAGDGSDAGQDEVLGSYKDTADAVMCILLPESDTAAFRTEGGLL
YVAEWNSLQHPVASAFLANVYSNYMATSGKSELTCSGKSFTALDLRRFAKSQADYVLGDN
PMKLSYLVGFGDSYPQRVHHRGASIPAGVDTGCDGQEWLKSPEPNPNVATGALVGGPFKN
DSFVDDRENVQQNEPTTYNSALVVGLLSGLLSTAPVAKSLS

Transcript Sequence

Transcript ID

Zm00001d014782_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:62917160:62919846:-1 gene:Zm00001d014782 gene_biotype:protein_coding transcript_biotype:protein_coding description:Endoglucanase 2
Sequence

GCCATTGCCGGCGGCACGTCCTGCCCGCCCGCCCGCGCAGTTGGTACCCCCGTACGTACG
TGGCGGCTACCCATTCGTTCCCCGCGCGCGTGGATGGTCGGTTGATGCAGCCAAGGGGAT
CGTGCCCCGCCGCGGATGGCCGTTGCTGTCCTCCTTCCTGTCGTCGTCGTCGTCGATCTC
TCTCGCGGTCGCGCCGCGCCTCTGAATAATCATCGATCTGGTGGCTTCGGGAAGGGCCCC
GCGGGCGACCAATAATGGCGCGGAGGTGCTGCGGCTGCAGCGTGCGGTGCTGTTGCTGCC
TCCTGGTGCTGACGCTGCTCGCGCTCGCGGTCACGGCCGCCGTCGTGTTCGCCCGCTACA
AGGACGGCGGCAACATCTTCCCCATCCCCGGCTTGCCGGACCCCAAGTATGCCGAGGCGC
TCGCCGTGGCGCTCCGCTTCTTCCAGGTCCAAAAATCCGGGAAGCTGGTGAACAACACGA
TCCCGTGGCGAGGTGACTCGGCGCTGCGCGACGGCGAGGATGCCAAGCTGGACCTGTCCA
GGGGCATGTACGACGCGGGCGACCACGTGAAGTTCGGGTTCACGATGGCGTTCACGGGCA
CCATGCTGTCGTGGTCCGTCCTCGAGTACGGCGACGCCATGAGCGACGCCCAGCAGCGCG
ACGCCGCCATGGACGCGCTGGGCTGGATCATGGAGTTCCTCGTCAACGCGCACCCCTCTG
ACGACGTGCTCTACATCCAGGTGGGCGACCCGAAATCGGACCACAAGTGCTGGGAGCGGC
CGGAGACGATGTCGGAGAAGAGGCCGCTGACGAAGATCACCGCGAAATCCCCCGGCAGCG
ACGTGGCCGCGGAGACGGCGGCGGCCATGGCCGCGGCGTCGCTGGTGTACAAGCCCGGCA
ACGCGACGTACGCGTCGTCGCTCCTGGACCACGCCGAGCGGCTGTTCAAGTTCGCCGATG
CGCACCGGGGCTCCTACACGCGCACGTTCCCGGAGCTCAGCGCCTACTACAACTCCACGA
CGTACCAGGACGAGCTCCTGTGGGCGGCCGCCTGGCTGTACCACGCCACCGGCAACCACA
GCTACCTGAGCTACGCCACCGGCAGGAACGCCGACGAGTTCGCCGACCTGGGCAACCCTA
GGTACTTCAGCTGGGATGACAAACGCGCCGGCACCGAGGTTCTCTTGTCCAGGGTGATGT
TCTTCGCCGGAGATGGATCTGATGCCGGACAAGACGAGGTCCTTGGGTCGTATAAGGACA
CCGCCGACGCCGTCATGTGCATCCTCCTACCGGAGTCGGACACTGCGGCTTTCAGAACAG
AAGGGGGGTTACTGTACGTGGCGGAGTGGAACTCGCTGCAGCACCCGGTGGCGTCAGCGT
TCCTCGCCAACGTCTACAGCAACTACATGGCGACGTCGGGGAAGTCGGAGCTGACCTGCA
GCGGCAAGAGCTTCACGGCGCTGGACCTCCGCAGGTTCGCCAAGTCCCAGGCGGACTACG
TCCTCGGCGACAACCCCATGAAGCTGAGCTACCTCGTCGGCTTCGGGGACAGCTACCCGC
AGCGGGTGCACCACCGCGGCGCGTCCATCCCCGCCGGCGTCGACACCGGCTGCGACGGCC
AGGAGTGGCTCAAGTCGCCTGAGCCCAACCCGAATGTCGCCACGGGCGCGCTGGTCGGCG
GGCCGTTCAAGAACGACTCGTTCGTCGACGACAGGGAGAACGTGCAGCAGAACGAGCCGA
CCACGTACAACAGCGCGCTCGTCGTCGGCTTGCTCTCCGGCCTCCTCTCAACTGCCCCCG
TCGCCAAGTCCCTCTCGTGATCCGGCCTGCTCTGCTCGATTAATCGATTGGTTTCCTTTT
CTAACTGACCGACTCTGCTGTGGATGTGACTTCGACTGATGGCATGTGGATTTAATTTGT
TCCTCTGAAAATGCTGATGTCAAACTGTTCAATCGATCAGTGTTAAGTGTTAGCGTGTTG
CGATAGCAATTAGCATACTTGTGTGATGCAGTGTCTTTGGTCTTCTGTCTAACAAGTTAG
CAGTCACTACTAATTATACATGCTATCCATGAGAGTGCAGGTGTCAAGCTGATCAATGAC
TGATAGGTTGTTGTGTTAGCATCGAAAAATTAAGAGATTGGCATCAGAACATAATGGAAA
TGACTTGGAATTACATC