Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d014650_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:5:57311706:57315358:-1 gene:Zm00001d014650 gene_biotype:protein_coding transcript_biotype:protein_coding description:Disease resistance protein RPM1
Sequence

ATGGGAGGTTTAGGAAAAACTGCTATTGCAAGCACCGTCTACAAGAACCAAAAAATCATA
ACATCTTTCGACTGTCACGCATGGGTTATTGTCTCTCAGACTTACCAAGTCGAGGAGCTA
CTAAGAGAAATTATAAATCAGCTAATAATAAAAGAAAGAGCAAGCATGGCAAGTGGCTTC
ATGACCATGAGTCGCATGAGATTAGTTGAGGTAATACAAAGCTATTTGAGGGACAAAAAA
TACTTCGTTGTCCTGGATGATGTATGGGACAAAGATGCTTGGTTATTTTTGAACTATGCA
TTCGTCAGAAACGAACGTGGAAGTAAAGTGCTGATAACAACCCGGAGAAAAGATGTGTCT
TCTTTGGCAGCCGACAACTATGTCATTGAACTTAAAACCCTTAAAGATGCTGAATCTTGG
GAGCTGTTTTGTAAGAAGGCATTTCATGCTTCAGAAGATAACATTTGTCCTGAAAATATA
AGATGTTGGGCAACCAAAATTGTTGCAAAGTGCCAAGGATTGCCACTAGCCATTGTAACT
ATTGGCAGTATTCTGTCATACCGTGACTTAAAGGAACATGAGTGGGCATTTTTCTTCAAA
CAACTTAGCTGGCAGTTAGCCAACAATCCAGAGCTCAGCTGGATTTCCAGTGTCTTGAAG
TTGAGCTTGAATGATCTACCAAGTTATCTTAGGAGCTGCTTCCTCTACTGCAGCATCTTT
CCTGAAGATTATAAGATTAGAAGAAAGCTGATTTCCAAGCTATGGATAGCGGAAGGTCTT
GTGGAAGAGAGAGGAGACGGAACAACAATGGAGGAAGTTGCTGAGTGTTACCTAATGGAG
CTCACTCAACGCTCTCTTCTTCAGGTCACAGAAAGGAAAGCATGTGGAAGAGCTAGAACA
TTTTTGATGCATGATCTTGTGAGAGAGATAACTTCAACCATTGCTAAAAAGGAGAAGTTT
AGCGTTGCACTTGCACATGGTGGTGCCAGTACAAGCCAAGTTGCCCATGAAGCTCGTCGC
CTATGCATCCAGAGAGGTGCCCAGACCTTGAATTCTCTCAGTAGCTCACGGCTCCGCTCA
TTCATTTTGTTTGACACTGAAGTACCATGTTCTTGGATACATGATACTGTATCATGTTTC
AGACTACTGAGAGTCCTATGCCTAAGATTTGTCAATGTTGAACAAGTGCCAGGTGTAATC
ACAGAACTGTATAACTTGCGCTATCTAGACATGTCTTACACAAAAGTGAAGATGATACCA
GCATCATTTGGAAAGCTCGTTAACCTACAAGTTTTGGATCTCAGAGACACCTATGTGGAG
GAGTTACCACTGGAAATAACTATGCTAACTAAATTACGGCAGTTACAGGTGTATGCACTC
TATGATATTCTACAAAGATCACCGAACAGCTTCAGTGCTACAAAATTTTTTGGTAACATT
TGTCATCTAAAGAATCTCCAAGCTTTGCAGGTTGTTTCAGCCAATAAAGATTTGGTTTCA
CAGCTAGGGAACTTGAATTTAATGAGAAGTTTGGCTATTGCGGAAGTGCGACAAAGCTAC
ATTGCAGAGTTATGGAACTCGCTGACAAAGATGCCTAACCTGAAAAGACTAATTATTTCC
ACGTGCAATGTGAATGAGACTCTGGACATGGAAATGCTAAAGCCACTGCCAAATCTGACA
ACATTTGTCCTATCAGGAAAGTTGGAGAGAGGCTTGCTCCCATCGATATTTTCTGTGAAA
TTAAAGCAATTAAAATTGGACTGGTCTAGTCTGAAGAAGGATCCTGTTAGCTCGCTCTCT
CATATGTTAAATCTTGTTGATCTATTCCTCACTGGAGGATATGCTGGGGAACAACTAACT
TTTCGCAACAGATGGTTTCCCAATCTAAAATGTCTGCAATTAGCTGACATGGAACATCTG
AATTGGATTGAGGTAGAGGATGGAACAATGATGAATCTACAATGTTTGTCACTTGCTGGT
CTAAGGAATCTAAAGGCTGTACCTGACGGAATCAAGTACATTAGGGCACTCCATGAGATG
TTTCTAACAGATATGTCAAATGAGTTCATAGTAAGACTGCATGGAAGTGACAATCACATT
GTTCAACACATACCCAACATCAAAAAGTTTGAGTCTTCTGATTCTCAAGCAGGTGAGTTC
CATATGGAATAA

Peptide Sequence

PEP ID

Zm00001d014650_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:5:57311706:57315358:-1 gene:Zm00001d014650 transcript:Zm00001d014650_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Disease resistance protein RPM1
Sequence

MGGLGKTAIASTVYKNQKIITSFDCHAWVIVSQTYQVEELLREIINQLIIKERASMASGF
MTMSRMRLVEVIQSYLRDKKYFVVLDDVWDKDAWLFLNYAFVRNERGSKVLITTRRKDVS
SLAADNYVIELKTLKDAESWELFCKKAFHASEDNICPENIRCWATKIVAKCQGLPLAIVT
IGSILSYRDLKEHEWAFFFKQLSWQLANNPELSWISSVLKLSLNDLPSYLRSCFLYCSIF
PEDYKIRRKLISKLWIAEGLVEERGDGTTMEEVAECYLMELTQRSLLQVTERKACGRART
FLMHDLVREITSTIAKKEKFSVALAHGGASTSQVAHEARRLCIQRGAQTLNSLSSSRLRS
FILFDTEVPCSWIHDTVSCFRLLRVLCLRFVNVEQVPGVITELYNLRYLDMSYTKVKMIP
ASFGKLVNLQVLDLRDTYVEELPLEITMLTKLRQLQVYALYDILQRSPNSFSATKFFGNI
CHLKNLQALQVVSANKDLVSQLGNLNLMRSLAIAEVRQSYIAELWNSLTKMPNLKRLIIS
TCNVNETLDMEMLKPLPNLTTFVLSGKLERGLLPSIFSVKLKQLKLDWSSLKKDPVSSLS
HMLNLVDLFLTGGYAGEQLTFRNRWFPNLKCLQLADMEHLNWIEVEDGTMMNLQCLSLAG
LRNLKAVPDGIKYIRALHEMFLTDMSNEFIVRLHGSDNHIVQHIPNIKKFESSDSQAGEF
HME

Transcript Sequence

Transcript ID

Zm00001d014650_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:57311706:57315358:-1 gene:Zm00001d014650 gene_biotype:protein_coding transcript_biotype:protein_coding description:Disease resistance protein RPM1
Sequence

GACAAGGTGACAGTTTTTTTTTCAGAAAACTTGAGCAGATATGGCAGATGCCCTCTTGGT
CGTTCTCAGAAAAGTTGCTCTGTCCTTGGCAGAAGGAGCACTAGAAAAGATTGGCAAAGA
GGTGGTCGAAGCAGCACCCCTCATGACAGATTTTGAGCATAGCATGAAACAAATTGAGGG
TGAACTCTCGGTTCTGCAAGCCTTCATTAACCAAGTTAGTGCACAGAGAGTCAGTGACAA
GGCATTTGATGCATGGTTGGACCAAGTCAGAGATGTTGCCCATGAGGTAGAAGACATCAT
TGATGAGTATGCTTACCTTACTGCACAAGCCGTTGATACGAGCAGCTTCTTCAAGAGAAA
GTTCCACCAGTTCAAGGGCATTGCAGCATGGAAGAAGTTCCCTGGCCAGATCAGTCAAGT
AGAAGCAAGGATTCAGAGGCTATCAGAAATGAGGAACCGATATGGTTTCTCAGTCAGTCA
ACTAGACAGGACTAACAATTTTCAGCTCTCCATTCAGTTTTCTCTGATAACTCTGAGATA
GTAGGAAATGCTGATGAAATCGGAAAACTGACACAATGGCTACTTGAGGAGAAACAAGAC
CGATCTCTAATTGCCATCCTTGGTATGGGAGGTTTAGGAAAAACTGCTATTGCAAGCACC
GTCTACAAGAACCAAAAAATCATAACATCTTTCGACTGTCACGCATGGGTTATTGTCTCT
CAGACTTACCAAGTCGAGGAGCTACTAAGAGAAATTATAAATCAGCTAATAATAAAAGAA
AGAGCAAGCATGGCAAGTGGCTTCATGACCATGAGTCGCATGAGATTAGTTGAGGTAATA
CAAAGCTATTTGAGGGACAAAAAATACTTCGTTGTCCTGGATGATGTATGGGACAAAGAT
GCTTGGTTATTTTTGAACTATGCATTCGTCAGAAACGAACGTGGAAGTAAAGTGCTGATA
ACAACCCGGAGAAAAGATGTGTCTTCTTTGGCAGCCGACAACTATGTCATTGAACTTAAA
ACCCTTAAAGATGCTGAATCTTGGGAGCTGTTTTGTAAGAAGGCATTTCATGCTTCAGAA
GATAACATTTGTCCTGAAAATATAAGATGTTGGGCAACCAAAATTGTTGCAAAGTGCCAA
GGATTGCCACTAGCCATTGTAACTATTGGCAGTATTCTGTCATACCGTGACTTAAAGGAA
CATGAGTGGGCATTTTTCTTCAAACAACTTAGCTGGCAGTTAGCCAACAATCCAGAGCTC
AGCTGGATTTCCAGTGTCTTGAAGTTGAGCTTGAATGATCTACCAAGTTATCTTAGGAGC
TGCTTCCTCTACTGCAGCATCTTTCCTGAAGATTATAAGATTAGAAGAAAGCTGATTTCC
AAGCTATGGATAGCGGAAGGTCTTGTGGAAGAGAGAGGAGACGGAACAACAATGGAGGAA
GTTGCTGAGTGTTACCTAATGGAGCTCACTCAACGCTCTCTTCTTCAGGTCACAGAAAGG
AAAGCATGTGGAAGAGCTAGAACATTTTTGATGCATGATCTTGTGAGAGAGATAACTTCA
ACCATTGCTAAAAAGGAGAAGTTTAGCGTTGCACTTGCACATGGTGGTGCCAGTACAAGC
CAAGTTGCCCATGAAGCTCGTCGCCTATGCATCCAGAGAGGTGCCCAGACCTTGAATTCT
CTCAGTAGCTCACGGCTCCGCTCATTCATTTTGTTTGACACTGAAGTACCATGTTCTTGG
ATACATGATACTGTATCATGTTTCAGACTACTGAGAGTCCTATGCCTAAGATTTGTCAAT
GTTGAACAAGTGCCAGGTGTAATCACAGAACTGTATAACTTGCGCTATCTAGACATGTCT
TACACAAAAGTGAAGATGATACCAGCATCATTTGGAAAGCTCGTTAACCTACAAGTTTTG
GATCTCAGAGACACCTATGTGGAGGAGTTACCACTGGAAATAACTATGCTAACTAAATTA
CGGCAGTTACAGGTGTATGCACTCTATGATATTCTACAAAGATCACCGAACAGCTTCAGT
GCTACAAAATTTTTTGGTAACATTTGTCATCTAAAGAATCTCCAAGCTTTGCAGGTTGTT
TCAGCCAATAAAGATTTGGTTTCACAGCTAGGGAACTTGAATTTAATGAGAAGTTTGGCT
ATTGCGGAAGTGCGACAAAGCTACATTGCAGAGTTATGGAACTCGCTGACAAAGATGCCT
AACCTGAAAAGACTAATTATTTCCACGTGCAATGTGAATGAGACTCTGGACATGGAAATG
CTAAAGCCACTGCCAAATCTGACAACATTTGTCCTATCAGGAAAGTTGGAGAGAGGCTTG
CTCCCATCGATATTTTCTGTGAAATTAAAGCAATTAAAATTGGACTGGTCTAGTCTGAAG
AAGGATCCTGTTAGCTCGCTCTCTCATATGTTAAATCTTGTTGATCTATTCCTCACTGGA
GGATATGCTGGGGAACAACTAACTTTTCGCAACAGATGGTTTCCCAATCTAAAATGTCTG
CAATTAGCTGACATGGAACATCTGAATTGGATTGAGGTAGAGGATGGAACAATGATGAAT
CTACAATGTTTGTCACTTGCTGGTCTAAGGAATCTAAAGGCTGTACCTGACGGAATCAAG
TACATTAGGGCACTCCATGAGATGTTTCTAACAGATATGTCAAATGAGTTCATAGTAAGA
CTGCATGGAAGTGACAATCACATTGTTCAACACATACCCAACATCAAAAAGTTTGAGTCT
TCTGATTCTCAAGCAGGTGAGTTCCATATGGAATAACTAATATAATTGTCATAATGCACT
AAAATAGATGTAAGCTAAGACAGGTCAATTAAAAAGTGGTGAGACAAAAAGTATTATATA
AAAGGAAACTATATGTAAAGCTTATTAGTAAAGTAGCTCTAGAAGTTGTGTTTGGTATCT
TCTAAATAGTACTTGTATTATTTACACGACTTAATAAATGCTGATATTTTTTGCAGTAAA
CAACGTTTATATACCGTGGCTTGCCGAGAAGTTTGGTTCTGGTGCTGTGGCTCATCTGGC
TCTTGACGGTTCAATGGGAGTTGTTTGTGCCAGTGGTAATCATTT