Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d014569_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:5:53736832:53758491:1 gene:Zm00001d014569 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable cadmium/zinc-transporting ATPase HMA1 chloroplastic
Sequence

ATGCAATTCCTCAGCGCCTCCGCCTCAGCCTCCTCTCTGGTGCCGCCGTCCGCGCACCTC
CTCCGCCTCTCGCGGCCCCAGCCCTTCCCGCAGCTCCTCCGCCGCCGCTCCCCGCCCAGA
CCCCTCGCGCTCACGCCCCGACTGCCGCTCCCCCTCGTCTCGCGACCCTCCCTTCTCTCC
ACCCCACGCGCGCACGGCGGCCACGGTCACGGGCACCACCACGGCCATGACCACCATCAC
CACCACGGCCACGGCCACGGTCACGGTCACCACGAGGTGGACGTGCACGGGGGAGGCGGG
GGCGCGGCGGTCATGCGGGTGGCGCGGGCGATCGGCTGGGCCAACGTCGCCGACGCGCTG
CGGGAGCACCTCCACCTCTGCTGCATCTCCCTCGGCCTCCTCCTCATCGCCGCTGCTTGC
CCGCACGTCGCGCTGCTCAACTCAGTCAGCCGCCTGCAGGCCGCTCTCATCGCCGTCGCC
TTTCCTCTCGTCGGGGTTTCTGCAGCGCTTGATGCTCTTGTAAATATTGCAGACGGTAGA
ATAAATATTCATGTCCTCATGGCTCTTGCAGCATTTGCTTCTATATTTATGGGAAATGCA
TTGGAGGGTGGCCTGCTTCTTGCAATGTTTAATTTGGCTCATATTGCTGAAGAGTATTTT
ACAAGTAAGTCAATGTTTGACGTGAGGGAACTGAAGGAAAATCACCCAGAATTTGCTTTG
TTGTTAGAAACAAGTGGAGAAGAATCTGTACAGTTTTCAAATCTAAGTTACACCAAGGTT
CCTGTGCACGATCTTGATGTGGGTTCTCATATCTTGGTTAGAGCTGGCGAGGCTGTGCCT
GTTGATGGTGAAGTCTACCAAGGTTCATCAACTGTCACAATTGAGCACCTAACTGGTGAA
ACAAAACCTTTAGAAAGGACAGTTGGAGATGCCATACCAGGTGGCGCCAGGAACTTGGAA
GGAATGATGATTGTAAAGGTGACCAAGTCATGGGAGGATTCAACGCTCAACAGAATTGTC
CAATTGACTGAAGAGGGCCAGCTAAACAAGCCAAAGTTGCAAAGATGGCTTGATGAGTTT
GGGGAGTACTATAGCAGAGTTGTGGTAGCCCTTTCTTTGGTTGTTGCACTTTTGGGACCA
TTACTTTTTAAGTGGCCTTTTTTTGGTAACTCAGTCTGTAGGGGTTCAATTTACCGTGGA
TTAGGACTTATGGTGGCTGCATCTCCCTGTGCATTGGCTGTAGCTCCATTGGCATATGCA
ACTGCAATCAGTTCTCTTGCTAGTAAGGGAATTTTGTTGAAAGGTGGCCATGTCTTGGAT
GCTCTTTCGTCTTGTCAGTCTATTGCTTTTGATAAGACAGGCACACTAACAACTGGGAAG
CTTATGTGCAAAGCAATTGAGCCTATCCATGGACATTTGGGTGTGAAAAGTGGTCGTAGT
AATCCTTCTTGCTGCACTCCAAACTGTGAAAGTGAGGCATTAGCTGTTGCTGCAGCCATG
GAGAAAGGAACAACCCATCCTATTGGAAGGGCTGTTTTAGACCACTCTGTTGGAAAGGAG
CTTCCAGTTGTCGCTGTAGAAAGTTTTGAATGCCTACCTGGTAGGGGAGTTGTTGCTACT
TTGAGTGGTGTAAAGGTAAGGGAAAATGAAAATGAGCTATCCGAGGCATCTATCGGTTCT
GTGGATTATATTTCTTCACTATATAGATCCAATGGTGAATCAGAGCAAATAAGAGCAGCA
GCAAAAAGTTCTGCATATGGGCCTGAATTTGTTCAAGCTGCTCTATCTGTTGACAAAAAA
GTTACTCTTTTCCACTTTGAGGATGAACCCCGCTCTGGTGTTTGTGAAGTTATATCCACC
TTAAGAGAGAAAGCTAAACTTCGCATTATGATGCTAACTGGAGACCATGAATCAAGTGCC
CAGAGAGTTGCTAAAGCTGTTTGTATTGAAGAAGTCCACTTCTCTTTAAAGCCAGAGGAT
AAATTAAATAAAGTGAAAGCAGTTTCAAGGGAAGGAGGTGGAGGTTTAATAATGGTCGGT
GATGGTATAAATGATGCACCAGCCCTTGCAGCCGCAACAGTTGGAATGGTTCTAGCCCAA
CGTGCCAGTGCAACTGCAGTGGCTGTTGCAGATGTTCTGCTGTTGCAGGATAATATTTGT
GGGGTGCCATTCTGCATTGCTAAGGCTCGTCAAACAACTTCATTGGTCAAACAAAGTGTA
GCTCTGGCCTTAACTTGTATTGTTTTTGCTGCGCTTCCTTCTGTCCTGGGATTTCTTCCT
CTTTGGTTGACTGTACTTCTTCACGAAGGAGGAACCCTTCTAGTGTGCTTGAACTCGATA
CGAGCCCTGAACACTCCGACATGGTCCTTGGTAGATGACATCCGGAAGCTCGTCGATAGC
TTAAGGAATTATTTCCCATCCAAGTTCAACAGCTCTCCCTCAAGCTACACCGCAAACACT
GCTCCCTTGTAG

Peptide Sequence

PEP ID

Zm00001d014569_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:5:53736832:53758491:1 gene:Zm00001d014569 transcript:Zm00001d014569_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable cadmium/zinc-transporting ATPase HMA1 chloroplastic
Sequence

MQFLSASASASSLVPPSAHLLRLSRPQPFPQLLRRRSPPRPLALTPRLPLPLVSRPSLLS
TPRAHGGHGHGHHHGHDHHHHHGHGHGHGHHEVDVHGGGGGAAVMRVARAIGWANVADAL
REHLHLCCISLGLLLIAAACPHVALLNSVSRLQAALIAVAFPLVGVSAALDALVNIADGR
INIHVLMALAAFASIFMGNALEGGLLLAMFNLAHIAEEYFTSKSMFDVRELKENHPEFAL
LLETSGEESVQFSNLSYTKVPVHDLDVGSHILVRAGEAVPVDGEVYQGSSTVTIEHLTGE
TKPLERTVGDAIPGGARNLEGMMIVKVTKSWEDSTLNRIVQLTEEGQLNKPKLQRWLDEF
GEYYSRVVVALSLVVALLGPLLFKWPFFGNSVCRGSIYRGLGLMVAASPCALAVAPLAYA
TAISSLASKGILLKGGHVLDALSSCQSIAFDKTGTLTTGKLMCKAIEPIHGHLGVKSGRS
NPSCCTPNCESEALAVAAAMEKGTTHPIGRAVLDHSVGKELPVVAVESFECLPGRGVVAT
LSGVKVRENENELSEASIGSVDYISSLYRSNGESEQIRAAAKSSAYGPEFVQAALSVDKK
VTLFHFEDEPRSGVCEVISTLREKAKLRIMMLTGDHESSAQRVAKAVCIEEVHFSLKPED
KLNKVKAVSREGGGGLIMVGDGINDAPALAAATVGMVLAQRASATAVAVADVLLLQDNIC
GVPFCIAKARQTTSLVKQSVALALTCIVFAALPSVLGFLPLWLTVLLHEGGTLLVCLNSI
RALNTPTWSLVDDIRKLVDSLRNYFPSKFNSSPSSYTANTAPL

Transcript Sequence

Transcript ID

Zm00001d014569_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:53736832:53758491:1 gene:Zm00001d014569 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable cadmium/zinc-transporting ATPase HMA1 chloroplastic
Sequence

ACCGTGACGACACAAGCCAAAACAGTGGGCAGGGGCCCACGCCGTCATCGCCATCCCCTT
GGCTCGCCACCACACGCCCGCCACAAAGGTCCAACCCCGTGGTGGACCAGTCCTCTTTCC
TCAGCTACTGCTCACCGCCGGCACCACGAGCGTCAACCGCTTCGCCGACGCGATCTCCTC
CAGCCCCCGCTGCCGCGATGCAATTCCTCAGCGCCTCCGCCTCAGCCTCCTCTCTGGTGC
CGCCGTCCGCGCACCTCCTCCGCCTCTCGCGGCCCCAGCCCTTCCCGCAGCTCCTCCGCC
GCCGCTCCCCGCCCAGACCCCTCGCGCTCACGCCCCGACTGCCGCTCCCCCTCGTCTCGC
GACCCTCCCTTCTCTCCACCCCACGCGCGCACGGCGGCCACGGTCACGGGCACCACCACG
GCCATGACCACCATCACCACCACGGCCACGGCCACGGTCACGGTCACCACGAGGTGGACG
TGCACGGGGGAGGCGGGGGCGCGGCGGTCATGCGGGTGGCGCGGGCGATCGGCTGGGCCA
ACGTCGCCGACGCGCTGCGGGAGCACCTCCACCTCTGCTGCATCTCCCTCGGCCTCCTCC
TCATCGCCGCTGCTTGCCCGCACGTCGCGCTGCTCAACTCAGTCAGCCGCCTGCAGGCCG
CTCTCATCGCCGTCGCCTTTCCTCTCGTCGGGGTTTCTGCAGCGCTTGATGCTCTTGTAA
ATATTGCAGACGGTAGAATAAATATTCATGTCCTCATGGCTCTTGCAGCATTTGCTTCTA
TATTTATGGGAAATGCATTGGAGGGTGGCCTGCTTCTTGCAATGTTTAATTTGGCTCATA
TTGCTGAAGAGTATTTTACAAGTAAGTCAATGTTTGACGTGAGGGAACTGAAGGAAAATC
ACCCAGAATTTGCTTTGTTGTTAGAAACAAGTGGAGAAGAATCTGTACAGTTTTCAAATC
TAAGTTACACCAAGGTTCCTGTGCACGATCTTGATGTGGGTTCTCATATCTTGGTTAGAG
CTGGCGAGGCTGTGCCTGTTGATGGTGAAGTCTACCAAGGTTCATCAACTGTCACAATTG
AGCACCTAACTGGTGAAACAAAACCTTTAGAAAGGACAGTTGGAGATGCCATACCAGGTG
GCGCCAGGAACTTGGAAGGAATGATGATTGTAAAGGTGACCAAGTCATGGGAGGATTCAA
CGCTCAACAGAATTGTCCAATTGACTGAAGAGGGCCAGCTAAACAAGCCAAAGTTGCAAA
GATGGCTTGATGAGTTTGGGGAGTACTATAGCAGAGTTGTGGTAGCCCTTTCTTTGGTTG
TTGCACTTTTGGGACCATTACTTTTTAAGTGGCCTTTTTTTGGTAACTCAGTCTGTAGGG
GTTCAATTTACCGTGGATTAGGACTTATGGTGGCTGCATCTCCCTGTGCATTGGCTGTAG
CTCCATTGGCATATGCAACTGCAATCAGTTCTCTTGCTAGTAAGGGAATTTTGTTGAAAG
GTGGCCATGTCTTGGATGCTCTTTCGTCTTGTCAGTCTATTGCTTTTGATAAGACAGGCA
CACTAACAACTGGGAAGCTTATGTGCAAAGCAATTGAGCCTATCCATGGACATTTGGGTG
TGAAAAGTGGTCGTAGTAATCCTTCTTGCTGCACTCCAAACTGTGAAAGTGAGGCATTAG
CTGTTGCTGCAGCCATGGAGAAAGGAACAACCCATCCTATTGGAAGGGCTGTTTTAGACC
ACTCTGTTGGAAAGGAGCTTCCAGTTGTCGCTGTAGAAAGTTTTGAATGCCTACCTGGTA
GGGGAGTTGTTGCTACTTTGAGTGGTGTAAAGGTAAGGGAAAATGAAAATGAGCTATCCG
AGGCATCTATCGGTTCTGTGGATTATATTTCTTCACTATATAGATCCAATGGTGAATCAG
AGCAAATAAGAGCAGCAGCAAAAAGTTCTGCATATGGGCCTGAATTTGTTCAAGCTGCTC
TATCTGTTGACAAAAAAGTTACTCTTTTCCACTTTGAGGATGAACCCCGCTCTGGTGTTT
GTGAAGTTATATCCACCTTAAGAGAGAAAGCTAAACTTCGCATTATGATGCTAACTGGAG
ACCATGAATCAAGTGCCCAGAGAGTTGCTAAAGCTGTTTGTATTGAAGAAGTCCACTTCT
CTTTAAAGCCAGAGGATAAATTAAATAAAGTGAAAGCAGTTTCAAGGGAAGGAGGTGGAG
GTTTAATAATGGTCGGTGATGGTATAAATGATGCACCAGCCCTTGCAGCCGCAACAGTTG
GAATGGTTCTAGCCCAACGTGCCAGTGCAACTGCAGTGGCTGTTGCAGATGTTCTGCTGT
TGCAGGATAATATTTGTGGGGTGCCATTCTGCATTGCTAAGGCTCGTCAAACAACTTCAT
TGGTCAAACAAAGTGTAGCTCTGGCCTTAACTTGTATTGTTTTTGCTGCGCTTCCTTCTG
TCCTGGGATTTCTTCCTCTTTGGTTGACTGTACTTCTTCACGAAGGAGGAACCCTTCTAG
TGTGCTTGAACTCGATACGAGCCCTGAACACTCCGACATGGTCCTTGGTAGATGACATCC
GGAAGCTCGTCGATAGCTTAAGGAATTATTTCCCATCCAAGTTCAACAGCTCTCCCTCAA
GCTACACCGCAAACACTGCTCCCTTGTAGATTACCATGTCCAGCAACGGCCGTCTTTGGT
TAACCTTGTTGTTTCTGTGGCACCGTTTGAATTTAGGCGAGGGGTTCTAACCTAATTTTG
TAGGCGCCCGCTGTACTCTTTTCACCACCATGTAAAGAAAGAAACTTGGCTTGAGGTTGA
GCTGAAGGTCAAAGGACAGTGATGAAACATCCAGTTACGACGTGGCGCAGAATCAACGTC
TGTGTCTGTTGGGCCCGTTCGTTATGTGGAATACAATACATACAGG